prdm8 (LOC106576848)


Basic Information

Item Value
gene id prdm8
gene name LOC106576848
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 60496970 ~ 60501618 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021606732.2
TAATGGGCTTGTTCCGACATTGCAGCCGAGAGTGCAGGCGAATGCCGATCAACAAagaccttgcatcataaataaccaCTCATTAATATTTGtagagcagtcagtcagtcacaatttacccatgatacaaTACGGTTTTGATCCTCTCGAACACGgccattaagtgtgtgtgtgagcgagcagAGAGGCAGTAACGAGGCAGACACTGTCGTGATCACTCTCGTTTTCAGACCGTAACAGCAACCGAAGGAAGGAGAATCGTTCTAGCGGCGAGTGTACCTGCTGATAACCAGCCTCCTCGCGGACATACCGAACCACACGCTACCTCCACGACCAGACGGCTAACCATGGACCAGAGTTTTTTATCTCGTTCCCTCTGGACCATTGAGGGTAAATTCCTCCAGCACCACGCGACAGACCTCCATACCAGCGTGCACGTCACTCGCAACATCCCAGCTGGGGCACAGTTCGGCCCGTGCATCCTTCAGAATACTTTCTATGACACAGTCGCCTTCATAGCGCTCAAATCCCGCGACAAGAGAAGCAAATCATACGTGTTCAGAGTGGACCCCGAGGCTATGCGGAGCTCTGCTCTAGTGCTGTCCTGGCTGCGACTGGTGCAGGCGGCGTGTGGCAGGGAGGAACAGAACACCGAAGCGTTCCTGAAGGGAGGCCAGCTGTATTTCCGGACCACCAGGGACATACGTCAGGAAGAGGAACTGTTGGTGTGGTATGACCAGGAATTGTCACATCTACTGGGCTTCACTGACATCTCAGCCAGAGGACAAAATgaagAGCTTAAATGCGCAACATGTAACCAGGTCTTCAAGAATGAGCATCCCTATTTGGCCCACTGCCGCTTCCTGTGCGCGCAGGTGAAGTATGACGCGCTGAGCAGAGAGTTCTACGAACACAAACACATGGAGATCAAGCGGCAACGACGCGTCACAGACTTCCACAATATCGCCAGGGATCTGGAACATAAAAGATACGGCGCCAGTGAAGACGCTGAGATTTCCCCGCGGAAATGGAAACACGAGGAGACGGGTTATCCCCGATGGAGGAAACCTGTGCTACTTGAGAAAACTAACATAtcgaacaacaacaacatcacacaGATAACCAGAGACTACCACCCCACTGCGCCAGAGTCAACTGGCTCTGCATTGAAACTGAAGGCGGAGAAGTACCAGCTCAAAAAGGACCACGTGGAATGTAAAAACAGTGCGTTTACAGAGGTTGGAGCAGCGAAAATGAGTTTTACGCACGAGAAAGAAAAGCCAACGGAGGCTGATTCTGAGACAGTGCGGGAGATGAGCGCTGATTTAAACTCAAACAGCAACAGCAGTGCCTTTTCATTCGTTCTGCGCAGTGGAGCGGAGGAGCAGAAAAGCGCTTTCTGTAAACCCTGTAAAAGGACTTCTAACCCCTCTACAGCGCACCCATCCAACACATTACCTGCTCCATTGAACCGCCTAGAGGAAGTGAGAGACGTTTTTACCTCAAAGACGGTTCTGGGATACAACAATCTATTGGCTACTAATATGTTGAATGGTGATTTACCTCGCGCACAGACACTACCCACATCGGTTAATGGAAACGCTTTCCCGTACGCGCCAGAGCACTGGTCCAGGAGCATTGGAGACCAACTACAAACCACGTCGTCTTTAACAATTCTTCCACCAACGTTTACCACCATTGGGGTGTCAGTGCAAAACTGGTGCGCCAAGTGTAACCTCTCCTTCCGCATGACGTCTGACCTAGTGTTACACATGCGCTCGCACCACAAGAAGGAGTTCGCGGCGGAGTCCCAGGTGAGGAGGAGGCGAGAGGAGAAACTTACCTGCCCTATCTGCCACGAGTTCTTCCGGGAACGGCACCACCTTTCACGTCACATGACATCGCACAATTAAAACCCATTGGGCATAAGAAAAGCCATTAGAAAACGTATATTTAAAGAAAACGACATCggacatactgtatgtaattACAAGAGTAGAACAGAGTAATTTAGAGTAATTAAGCATTTAATGACAATTTGAAGTCACTAACATCTTAATGTAGGACCATCCACTTGTGATTATCGATCATTACGCATTAGGGCGTATTTGGGCACGTAGTTTCTCATTCAGGATTTCACACAGTGTCCACTATATGTCCACAGAATACGAAATTGAATACACAACATATTCATTTTGATTATCTGCACAGTGGGTGAGAGGAATATTGTGTGTAATTGGGattataaggttctatctgcattttTGTCAAAATGTAGTAATTGGCATTCTTGTTTTACTCAGTGTTctatatagtactctaaataccCCCAATTAATGTTGTTAAGTTAAAAAACAGTACACAATCAAAATtactgacaccattcaaaccaatgagggttcaGAACTTTAAAGacaattatctcagaatcataTTTTTTGCAGATATAACCTTAAAGTCCCAAGCTCTCGGTATGTCTGATCCGTGCCTTATGAAACTCAGGGTGGGACtgaagagagagactgaaggtcGCTTGCAGCTCTTGCGTTTGACCTCTGATTGTTATAAACATGTTTATGTCCATTACTCATTGTTTGACTAGACATACAGTATTACCAGAGCTTGTACGGAGAGAGATTGTGTAGATTAATTTAGCTGTTTTTGatgggaaaaaaacaacaacaacatcagatCCAAACTCTACTTTCCCTGTGTTTTCTTTAAACTTCCATAAAGACATTTTGTGTGAAA
>XM_036981567.1
TAATGGGCTTGTTCCGACATTGCAGCCGAGAGTGCAGGCGAATGCCGATCAACAAagaccttgcatcataaataaccaCTCATTAATATTTGtagagcagtcagtcagtcacaatttacccatgatacaaTACGGTTTTGATCCTCTCGAACACGgccattaagtgtgtgtgtgagcgagcagAGAGGCAGTAACGAGGCAGACACTGTCGTGATCACTCTCGTTTTCAGACCGTAACAGCAACCGAAGGAAGGAGAATCGTTCTAGCGGCGAGTGTACCTGCTGATAACCAGCCTCCTCGCGGACATACCGAACCACACGCTACCTCCACGACCAGACGGTGGACCCCGAGGCTATGCGGAGCTCTGCTCTAGTGCTGTCCTGGCTGCGACTGGTGCAGGCGGCGTGTGGCAGGGAGGAACAGAACACCGAAGCGTTCCTGAAGGGAGGCCAGCTGTATTTCCGGACCACCAGGGACATACGTCAGGAAGAGGAACTGTTGGTGTGGTATGACCAGGAATTGTCACATCTACTGGGCTTCACTGACATCTCAGCCAGAGGACAAAATgaagAGCTTAAATGCGCAACATGTAACCAGGTCTTCAAGAATGAGCATCCCTATTTGGCCCACTGCCGCTTCCTGTGCGCGCAGGTGAAGTATGACGCGCTGAGCAGAGAGTTCTACGAACACAAACACATGGAGATCAAGCGGCAACGACGCGTCACAGACTTCCACAATATCGCCAGGGATCTGGAACATAAAAGATACGGCGCCAGTGAAGACGCTGAGATTTCCCCGCGGAAATGGAAACACGAGGAGACGGGTTATCCCCGATGGAGGAAACCTGTGCTACTTGAGAAAACTAACATAtcgaacaacaacaacatcacacaGATAACCAGAGACTACCACCCCACTGCGCCAGAGTCAACTGGCTCTGCATTGAAACTGAAGGCGGAGAAGTACCAGCTCAAAAAGGACCACGTGGAATGTAAAAACAGTGCGTTTACAGAGGTTGGAGCAGCGAAAATGAGTTTTACGCACGAGAAAGAAAAGCCAACGGAGGCTGATTCTGAGACAGTGCGGGAGATGAGCGCTGATTTAAACTCAAACAGCAACAGCAGTGCCTTTTCATTCGTTCTGCGCAGTGGAGCGGAGGAGCAGAAAAGCGCTTTCTGTAAACCCTGTAAAAGGACTTCTAACCCCTCTACAGCGCACCCATCCAACACATTACCTGCTCCATTGAACCGCCTAGAGGAAGTGAGAGACGTTTTTACCTCAAAGACGGTTCTGGGATACAACAATCTATTGGCTACTAATATGTTGAATGGTGATTTACCTCGCGCACAGACACTACCCACATCGGTTAATGGAAACGCTTTCCCGTACGCGCCAGAGCACTGGTCCAGGAGCATTGGAGACCAACTACAAACCACGTCGTCTTTAACAATTCTTCCACCAACGTTTACCACCATTGGGGTGTCAGTGCAAAACTGGTGCGCCAAGTGTAACCTCTCCTTCCGCATGACGTCTGACCTAGTGTTACACATGCGCTCGCACCACAAGAAGGAGTTCGCGGCGGAGTCCCAGGTGAGGAGGAGGCGAGAGGAGAAACTTACCTGCCCTATCTGCCACGAGTTCTTCCGGGAACGGCACCACCTTTCACGTCACATGACATCGCACAATTAAAACCCATTGGGCATAAGAAAAGCCATTAGAAAACGTATATTTAAAGAAAACGACATCggacatactgtatgtaattACAAGAGTAGAACAGAGTAATTTAGAGTAATTAAGCATTTAATGACAATTTGAAGTCACTAACATCTTAATGTAGGACCATCCACTTGTGATTATCGATCATTACGCATTAGGGCGTATTTGGGCACGTAGTTTCTCATTCAGGATTTCACACAGTGTCCACTATATGTCCACAGAATACGAAATTGAATACACAACATATTCATTTTGATTATCTGCACAGTGGGTGAGAGGAATATTGTGTGTAATTGGGattataaggttctatctgcattttTGTCAAAATGTAGTAATTGGCATTCTTGTTTTACTCAGTGTTctatatagtactctaaataccCCCAATTAATGTTGTTAAGTTAAAAAACAGTACACAATCAAAATtactgacaccattcaaaccaatgagggttcaGAACTTTAAAGacaattatctcagaatcataTTTTTTGCAGATATAACCTTAAAGTCCCAAGCTCTCGGTATGTCTGATCCGTGCCTTATGAAACTCAGGGTGGGACtgaagagagagactgaaggtcGCTTGCAGCTCTTGCGTTTGACCTCTGATTGTTATAAACATGTTTATGTCCATTACTCATTGTTTGACTAGACATACAGTATTACCAGAGCTTGTACGGAGAGAGATTGTGTAGATTAATTTAGCTGTTTTTGatgggaaaaaaacaacaacaacatcagatCCAAACTCTACTTTCCCTGTGTTTTCTTTAAACTTCCATAAAGACATTTTGTGTGAAA

Function

NR:

description
PR domain zinc finger protein 8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021606732.2 False 2751 mRNA 0.46 4 60496970 60501618
XM_036981567.1 True 2528 mRNA 0.46 3 60496970 60501618

Neighbor

gene id symbol gene type direction distance location
rrp12 rrp12 coding upstream 69259 60403081 ~ 60427711 (+)
LOC110521558 LOC106576852 coding upstream 105344 60374052 ~ 60391626 (+)
LOC110526060 zdhhc16 coding upstream 126781 60301493 ~ 60370189 (+)
LOC110526075 NA coding upstream 188729 60305769 ~ 60308241 (+)
LOC110526041 LOC106576856 coding upstream 232761 60229471 ~ 60264209 (+)
LOC110526122 LOC106576844 coding downstream 615632 61117250 ~ 61227125 (+)
LOC110526134 NA coding downstream 628488 61091580 ~ 61132005 (+)
lrrfip2 lrrfip2 coding downstream 840487 61342105 ~ 61401807 (+)
LOC110526206 fam83h coding downstream 935989 61437607 ~ 61488427 (+)
LOC110526212 LOC106576837 coding downstream 999396 61501014 ~ 61505305 (+)
G66435 NA non-coding upstream 1875 60494733 ~ 60495095 (+)
G66375 NA non-coding upstream 176137 60320593 ~ 60320833 (+)
G66372 NA non-coding upstream 180434 60316305 ~ 60316536 (+)
G66370 NA non-coding upstream 184805 60311506 ~ 60312165 (+)
G66310 NA non-coding upstream 316721 60179896 ~ 60180249 (+)
G66475 NA non-coding downstream 3964 60505582 ~ 60505809 (+)
G66480 NA non-coding downstream 10052 60511670 ~ 60512034 (+)
G66487 NA non-coding downstream 22621 60524239 ~ 60559757 (+)
G67445 NA non-coding downstream 506911 61008529 ~ 61008729 (+)
G67460 NA non-coding downstream 519235 61020853 ~ 61021079 (+)
G66188 NA other upstream 554906 59941486 ~ 59942064 (+)
G65442 NA other upstream 1171841 59324636 ~ 59325129 (+)
G64338 NA other upstream 1796591 58699296 ~ 58700379 (+)
G64315 NA other upstream 1831064 58665334 ~ 58665906 (+)
G64292 NA other upstream 1909385 58586858 ~ 58587585 (+)
G67806 LOC106581772 other downstream 813256 61314874 ~ 61315252 (+)
G67930 mcmbp other downstream 1228147 61729765 ~ 61733388 (+)
G70011 NA other downstream 2773345 63274963 ~ 63275296 (+)
LOC110526969 stk32c other downstream 4307971 64809255 ~ 64946164 (+)
LOC110527164 LOC106576754 other downstream 5414117 65915581 ~ 65922285 (+)

Expression


Co-expression Network