LOC110519525 (LOC106576846)


Basic Information

Item Value
gene id LOC110519525
gene name LOC106576846
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 60660467 ~ 60695525 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981604.1
GTTGACTGTGAGGGGTGAGgtagagggacaagagaggggCAGTCTGAAAGGCCAGTGTTGTCTACCTGTTCGAGAGGACACCTACGCACCAAAATGGCcacagaggagagaggtcaaCCTAAAGCCGTGCCCGAGACCACTGGGAAATTCAGACCACTTCTCTCTGTCACCTCCGATCAAGACagcTGTATCTTGCAAATATATGTGTGTAAACCAGAGAGAGGGGGTCTGGGCTTTGCTCTGATTGGAGGATGCAACGGAAGTACGCTCAGAGTGAAGGAGATATGCGCTGGAGGCATGGCGCAGCAGGATGGACAGCTCAGAGTGGGAGACATACTGCTCGAGGTGAATGGTATAATAGTATCAGGTCTGAGCCACTGTAAGGTGGTGGATATCCTCCGTCAGGCTGAGGGAAACATCCAACTCACAATCTGTAGAGACATACCAAGGGCCAACACAGCACCCTGCACTGATGTATCCTTCTCTATGGCCTTCCCTGGAGACAACATGGCCGTCTGTCCTGGATCCAATATGGCTTCCTGTCCTGGATCAAATATGGCCTCTTATCCTGGATCAAATATGGTACCTTGTCCTGGATCAAATATGGCCTCCTGCCCTGAAGTCAACATGGCTACCAGCAATGGATCCAACATGGCTCCCTGCACTGGATCAAATGTGTCAGTCTTCATCGAAGCCCGTATGTCGGACAATGCCGAGCCATTCTCCAACCCTTCTGCATGTTCCTCACCTGATGTCCAGCAGGAGGACCTTCCCCCTGAGGGGACTTCAGATCCAGTACCTGATGTAGAGGAGGACATTACCCCACTTTCACCCCCCGATGCCTCCTATCACCCCTCACTCCGCCTGCGGACCCTCACAGAAGAGGACATGGCTGGACAGGAGAGCTGTAACAGTAAACCCTCTCATCAAGCTTGCTGCCTGTCCAGCAAGAGTATGACTAACTTGCTCCATGAAGCCTCGGACAGGAACCAAATCCCTGTGATGCCATTGGACGAAACCATGACTGGCAGCAAAAACAGCCAATCAGATGGCTGGAGCAGCGAGGATGAGGATGATGAGACATTTGAAGCTAAAGGTCAGGAGACCATGTCACACTTCCCAGGTCCACCTATAGTATCAGAAGAAGAGTTGGCCAGACTAGCCATGATCAGTCCAGCTAAGACCAGTCAATACGCTGGGTCGAGAGTAAAAGCCCTCATACAGATTCTACAACATCAACTAGACCAGCAAGAACTGGTCCGAGAGTTCATGGCCTTGGAGCATCTAAAGCCGTCTGATAACTGTCTAGTGGGGAAAGCTCCGGAGAACCGGGAGAAGAACCGCTATCGTGACATCCTGCCCTACGATAAGACGCGTGTTCCAGTGGGTGATAACCAGGACTATATTAACGCCAGTTATATCCGTATGGAGGTTGGCAGTGAGGAGTTCATCTATATCTCCTGCCAGGGTCCTCTGCCCTCCACCGTGCCCGACTTCTGGCAGATGGTCTGGGAGAACAGGTCTGATGTGATAGCCATGATGACccaggaggtggagagaggcagGGTGAAGTGTCACTGCTACTGGCCAGAGAGGGTGAGCTGTCCCCTAGACACAGGGCGCTTCCAGCTCAGCCTGGAGAACCAGCAGATCAAGGAATACTTCCACATCAAGATCATCCGCATGGTGGAGAAAGagTCTGGTGAGACCCACTTTGTCCGTCACCTGAAGTTTATCCGTTGGCCTGACCACGGTGTGCCGCGGAGTTCAGAGCAGCTGGTCAGATTTATCCGCTACCTCCGAGCAGTCCACCATAAAGGACCTGTCACTGTACACTGTAGTGCTGGGATAGGACGAACAGGAGTACTGATCTGCACCGATGTCATCCTGAGTCTCATAGAGAACGATCTCCCGATCAACGTTAGTAACATTGTGAGGGAGATGAGACTGCAGCGATATGGCATGATTCAGACTAAGGAACAGTACCTGTTCTGCTACAAGGTATGGTTGGAGGTTCTACATCGCATCCTGCAGCTGCATGGTCAGCATTGGCAACCAGAGAGCCCCCGCAAACTTAATTCGAGCCCTCGTACACACAGTAACCGATGGCAACCTGAGAGCCCCCATGAAGATAATCAATTTGTTTGACCAGTTTTCTTTTCCCCCACCCGTTAGCTGATTTTGTTATGAACACTGTATATGTATGCGTTTTAGCCAATTCCTCTGTTCGTTTTATGTCATGCCAAAACATGACAGATGGGACGACCAGGCTACAGTATGTTTCTGCATGGTTTTGATATTTGGGTTTTGAATTTATTGATGGAGGTAGACATTTTTACTGTTGGTTATTTTGTGGGGGAGGGTTTGAGATGGCAGTGACTGATTAAAAACTTAATTGAAA
>XM_036981596.1
ATGAGTTTAACAGCAGAAAATGCTTGTTGGTGCATGTAAATAATGATGTGAAGCTGAatcaccctccccctctctcaaacACTCTGAAAATAATGATGACCCTTTGCGCTCTTCTCAGACAACACTCTGGAGGTGCTGTTGAAGAAGAGCCTGTGTGGTTTGGGCTTCAGCTTCTACATCAGTGAGTTGAACAGTGGTTGTGACCAGGGCAGCAGTGTGGTGCGGATCAAAACCCTTTTCCAGGGTCAACCAGCCAAGGAGTCAGGACAGATCAGAGAAGGAGACGTCATATTGGCTGTTAATGGACAATGGGTTAAAGGCCTCAGCTACCAGAGGGTGTTGTTCCTGCTCCGTGGGCCTCCGTCTGAGGTCCACCTGACTCTCTGCAGACCTGCTCTTGGAGTACTGTCTCAACTGGATGCTGACACActgGTTCCTTTCTTGTCTCCAACCCGTGGGGTGAGGTCCAAGTCTCTAGACATCAGGCTAGGGGAAGATTATAGCCAGCTGCTCAAGCTACAGGCATACCAGAACCGTCAGTACAACCAGGAAAACCAGGCTCAGAAGGAGCCAATGCAGACATCACAAGCCCAGGACCAAGCCTCCAGGCAggccagacaaacagacaaatcCCCTGAGCCCTCTGGAGGTCCGAAGACTCAACAGAGTCAGGATAGTCAAGACAGTGAGATGGACGCAGCTGAGAACCAGccttcctcaccctctccctcacccccttccCCCATCTCCCTCGCCAGCAGAAGTGACGCAGGAGACAGTGAAGAGTTGTCGGTTGTGGACGAGGAAGGTTCCGAAGAAATGAGCTCGGCATCTGTCGGGGCCAAGACCAGTACTAGTCCCGTGTACACCAGTGGCATCAGAGAAGAGGCGGACGGCAGTTTAACATACTGCCTTATGGGTGATGGAATAACCATTCTGTCTGATAAAGAGTACTTGACCATCAGTTCGACTTCGGACAGGCCCTCTAGCCTTACCTCAAACACCTCATGTACCCCCAGTGTGGCTCCACACACTACCTCTCAAACCTCCAGGACCAGATCCACCCCCCCCACTAGGGTCCGATCCACCACCCCCAAAAGTACTTCCATCCCCCACAGCTTGTCCTCGCAAACCACAAGCTCAACAAACCCCAATTTGTCATTGCAAACCACCTCTGTCCAGCAGACACCAGCTCAGCCCTCCTCTAAGCCTACATCCAGCCTTTCCTCTAGGATGTCTGACCTCAACATCAGCCACTCAGTGCATCCTCTCCAGCCCCAGcatgctacacctcctcttcccAGCCTCTCCTCCCATACCTCCAACCCCAACTCCAGGATCTCTGATTGCAAACACAGCATCACCTCCGATCGTAAACACAGCATCACCTCCGATCGTAAACACAGCATCACCTTCGATCGTAAACACAGCATCACCTCCGATCGTAAACACAGCATCACATTCAAGACTACCAATGCCTCCAACATCACTCGTTCAGTCATCCAATACAATCCCCAGCCCCCTGACACATTGCCCCCCTCGCAACCCCCCGCACGCCACCCCTCTCCCCAGCCTCCCTtgtcctcactctctccccccattcAGGCTGCACCTCTCCAAAACACACACCCTAcctggagacaggagacagaaggGGAGGAGGACGAAGATGAGGATGAGAATGAGGAGGATCCCAGAAAAGGCATGATGAAGGAATTTGAGATGTGTGTGGTTCTGACCAAGTCGTGGAGTGGTAGCTTTGGGTTCACCATCACACGCAGCAAACTGGATGCCTGCTACTACATTCAGGACATACTGGACAACCCTGCTAAGACGGACGGACGGCTCAGACCAGGGGACAGACTAGTCacgGTCAACGGCCAAGATATGACGAATGTGACGGATGAGGTTGCCATGTCGATCCTGAGGTCGTCTCCTAGGAGACTGAGTTTGATCCTGGGGAGGGCGGTGACCAACCTGATCGCTCCACCTTTTCCAGACAACCTGCAAGACATCATACTGCACAAGACACCGACTGGACAGCTTGGTATAAAGCTGACGGGTGGTATAGGCAGCAAATggcaggggatctactgtctggAGGTGGTTCCTGGTTCACCTGCGTGTGAGGAAGGCAGCGTCCAACCAAACGACAGGATCCTGTACATCTGTGGCCGATGCACCATGGGAATGACTCTGGAGGACGCTGTCAAGGCCTGCGAGACTGCTCCGCGCAAAGTGAAACTTAAGGCCACCAGAGATGACCAGCCTGTGACTCCCAAAGCCAAGAGTAATGCTAAAGCCGTGCCCGAGACCACTGGGAAATTCAGACCACTTCTCTCTGTCACCTCCGATCAAGACagcTGTATCTTGCAAATATATGTGTGTAAACCAGAGAGAGGGGGTCTGGGCTTTGCTCTGATTGGAGGATGCAACGGAAGTACGCTCAGAGTGAAGGAGATATGCGCTGGAGGCATGGCGCAGCAGGATGGACAGCTCAGAGTGGGAGACATACTGCTCGAGGTGAATGGTATAATAGTATCAGGTCTGAGCCACTGTAAGGTGGTGGATATCCTCCGTCAGGCTGAGGGAAACATCCAACTCACAATCTGTAGAGACATACCAAGGGCCAACACAGCACCCTGCACTGATGTATCCTTCTCTATGGCCTTCCCTGGAGACAACATGGCCGTCTGTCCTGGATCCAATATGGCTTCCTGTCCTGGATCAAATATGGCCTCTTATCCTGGATCAAATATGGTACCTTGTCCTGGATCAAATATGGCCTCCTGCCCTGAAGTCAACATGGCTACCAGCAATGGATCCAACATGGCTCCCTGCACTGGATCAAATGTGTCAGTCTTCATCGAAGCCCGTATGTCGGACAATGCCGAGCCATTCTCCAACCCTTCTGCATGTTCCTCACCTGATGTCCAGCAGGAGGACCTTCCCCCTGAGGGGACTTCAGATCCAGTACCTGATGTAGAGGAGGACATTACCCCACTTTCACCCCCCGATGCCTCCTATCACCCCTCACTCCGCCTGCGGACCCTCACAGAAGAGGACATGGCTGGACAGGAGAGCTGTAACAGTAAACCCTCTCATCAAGCTTGCTGCCTGTCCAGCAAGAGTATGACTAACTTGCTCCATGAAGCCTCGGACAGGAACCAAATCCCTGTGATGCCATTGGACGAAACCATGACTGGCAGCAAAAACAGCCAATCAGATGGCTGGAGCAGCGAGGATGAGGATGATGAGACATTTGAAGCTAAAGGTCAGGAGACCATGTCACACTTCCCAGGTCCACCTATAGTATCAGAAGAAGAGTTGGCCAGACTAGCCATGATCAGTCCAGCTAAGACCAGTCAATACGCTGGGTCGAGAGTAAAAGCCCTCATACAGATTCTACAACATCAACTAGACCAGCAAGAACTGGTCCGAGAGTTCATGGCCTTGGAGCATCTAAAGCCGTCTGATAACTGTCTAGTGGGGAAAGCTCCGGAGAACCGGGAGAAGAACCGCTATCGTGACATCCTGCCCTACGATAAGACGCGTGTTCCAGTGGGTGATAACCAGGACTATATTAACGCCAGTTATATCCGTATGGAGGTTGGCAGTGAGGAGTTCATCTATATCTCCTGCCAGGGTCCTCTGCCCTCCACCGTGCCCGACTTCTGGCAGATGGTCTGGGAGAACAGGTCTGATGTGATAGCCATGATGACccaggaggtggagagaggcagGGTGAAGTGTCACTGCTACTGGCCAGAGAGGGTGAGCTGTCCCCTAGACACAGGGCGCTTCCAGCTCAGCCTGGAGAACCAGCAGATCAAGGAATACTTCCACATCAAGATCATCCGCATGGTGGAGAAAGagTCTGGTGAGACCCACTTTGTCCGTCACCTGAAGTTTATCCGTTGGCCTGACCACGGTGTGCCGCGGAGTTCAGAGCAGCTGGTCAGATTTATCCGCTACCTCCGAGCAGTCCACCATAAAGGACCTGTCACTGTACACTGTAGTGCTGGGATAGGACGAACAGGAGTACTGATCTGCACCGATGTCATCCTGAGTCTCATAGAGAACGATCTCCCGATCAACGTTAGTAACATTGTGAGGGAGATGAGACTGCAGCGATATGGCATGATTCAGACTAAGGAACAGTACCTGTTCTGCTACAAGGTATGGTTGGAGGTTCTACATCGCATCCTGCAGCTGCATGGTCAGCATTGGCAACCAGAGAGCCCCCGCAAACTTAATTCGAGCCCTCGTACACACAGTAACCGATGGCAACCTGAGAGCCCCCATGAAGATAATCAATTTGTTTGACCAGTTTTCTTTTCCCCCACCCGTTAGCTGATTTTGTTATGAACACTGTATATGTATGCGTTTTAGCCAATTCCTCTGTTCGTTTTATGTCATGCCAAAACATGACAGATGGGACGACCAGGCTACAGTATGTTTCTGCATGGTTTTGATATTTGGGTTTTGAATTTATTGATGGAGGTAGACATTTTTACTGTTGGTTATTTTGTGGGGGAGGGTTTGAGATGGCAGTGACTGATTAAAAACTTAATTGAAA

Function

NR:

description
tyrosine-protein phosphatase non-receptor type 13-like isoform X3

GO: NA

KEGG:

id description
K18039 PTPN20; tyrosine-protein phosphatase non-receptor type 20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981604.1 False 2401 mRNA 0.51 14 60660467 60690036
XM_036981596.1 True 4579 mRNA 0.52 21 60660467 60695525

Neighbor

gene id symbol gene type direction distance location
gdf10a LOC106576847 coding downstream 121546 60525419 ~ 60538921 (-)
LOC110526097 LOC106576849 coding downstream 165167 60430184 ~ 60495300 (-)
LOC110526081 NA coding downstream 311158 60342589 ~ 60349309 (-)
LOC110532500 NA coding downstream 324246 60334984 ~ 60336221 (-)
LOC110526047 LOC106576854 coding downstream 359154 60281672 ~ 60301313 (-)
LOC118964986 LOC106576846 coding upstream 20419 60715944 ~ 60717300 (-)
abcc2 mrp2 coding upstream 550751 61246276 ~ 61311977 (-)
mlh1 mlh1 coding upstream 707505 61403030 ~ 61418074 (-)
LOC110526202 LOC106576840 coding upstream 722854 61418379 ~ 61429118 (-)
LOC110526243 LOC106576835 coding upstream 846159 61541684 ~ 61544247 (-)
G67023 NA non-coding downstream 138239 60521813 ~ 60522228 (-)
G67099 NA non-coding downstream 154368 60505839 ~ 60506099 (-)
G67096 LOC106576848 non-coding downstream 161133 60499111 ~ 60499334 (-)
G67095 NA non-coding downstream 161766 60498493 ~ 60498701 (-)
G67094 NA non-coding downstream 163159 60497079 ~ 60497308 (-)
G67446 NA non-coding upstream 312942 61008467 ~ 61008711 (-)
G67459 NA non-coding upstream 324650 61020175 ~ 61020408 (-)
G67464 NA non-coding upstream 326796 61022321 ~ 61022524 (-)
G67641 NA non-coding upstream 328235 61023760 ~ 61216832 (-)
G67703 NA non-coding upstream 454953 61150478 ~ 61187828 (-)
LOC110525695 LOC106576879 other downstream 1505322 59144373 ~ 59199471 (-)
G65147 NA other downstream 1874850 58784742 ~ 58785617 (-)
G63328 NA other downstream 3261979 57397194 ~ 57398488 (-)
G63093 NA other downstream 3597619 57035667 ~ 57062848 (-)
G68736 NA other upstream 986753 61682278 ~ 61686308 (-)
LOC110526417 LOC106576819 other upstream 1286206 61981652 ~ 61983330 (-)
G69210 NA other upstream 1715997 62411522 ~ 62418296 (-)
G70013 NA other upstream 2581683 63277208 ~ 63277752 (-)
LOC110526867 LOC100136521 other upstream 3674377 64369803 ~ 64384521 (-)

Expression


Co-expression Network