herc4 (herc4)


Basic Information

Item Value
gene id herc4
gene name herc4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61517953 ~ 61540937 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607008.2
TCGTCACATCCAGTTTCTAAAAACTCTAGAACATTACAGTCTTTGATTACCGTATGTTCGAGTGCTTTTCTTCTGTGTGTATGACACGGCATATAAAGCTACAGTCATTAATATGACAGTGCATAGCAAACGATTTTGGTATGTGGCGCCAGCAGTTGCCTGAACTCAATGACTATCTACATTTTACACCTTCCGAGCAAGTCTGGTCATCGAAATTTTGCTAATACAAGAAAAACATTTCAGACCTTTCGTGCGTGCCATCGTTTGCCACCATTGCATTGGCTAGCAACAGATTCCCCAGTCACAGATGGCCCAAGTGGTGTACACAACTTGATATCAGGACTTCTTTGCCACAACGGACTGTAATCCTGTTGACCTGGTCCACACCAGGAGTGGGGCTAGAGGGGGGGCGGTGGCAATGCTGTGTTGGGGAAATGCTTCCTTCGGTCAGCTAGGTTTGGGCGGGATCGATGAGGAGATTGTGGTGGAGCCCCGGAAATGTGATTTCTTTCATGGGAAGCAGGTGTGTGATATCGGATGTGGCCGACGGCACACCACATTTCTACTGGGAGACGGGACTGTGTACACCTGTGGCTGCAATGACATTGGGCAGCTGGGGCACGAGAAGTCTCGAAAGAAACCAGAGCAGGTTGTGGCACTAGATGCACAGAACATTGTGGCAGTGTCATGTGGGGAGGCCCATACTCTCGCACTGAATGACAAAGGACAAGTGTTTGCATGGGGCTTGGCCACAGATGGACAGCTGGGCCTTGCAAACTTCGAAGAATGTGTACGTGTGCCCAGaaacATCAAGAGTTTATCAGATGTAGAAATTGCTCAGGTAGCCTGTGGATATCGGCACTCCCATGCTCTGTCTAGAGGAGGCCAAGTCTATTCATGGGGACAAAACCGATACGGACAACTAGGGCTGGGAGTAGCTGGACAAGGCATCTCTACTCCCCAAGTCATCCAGTCTTTACAGGGGATTCCCTTCATCCAGATCTCAGCAGGGGGTGCTCACAGCTTTGCCCTCACATTCTCAGGGGCCGTCTTTGGCTGGGGGCGCAACAAGTTTGGGCAACTCGGCCTCAATGACAACAATGATCGGTATTATCCAGCCCAGCTCAAGTCCCTCAGGTCACAGAGGGTTATCTACATCTGCTGTGGGGAGGACCACACTGCCGCACTTACAAAGGAAGGAGGTGTGTTTACATTTGGAGCAGGAGGGTATGGCCAGCTTGGACATAACACTACAAACCATGAGATCAACCCCAGGAAGGTGTTTGAGCTCATGGGAAATGTAGTCACACAGATATCCTGTGGAAGACAGCACACTCTGGCCTTCATCCCCTCCTCTGGAAAGATGGATTCATTTGGGCTGGGAGGGAACGGGCAGCTCGGTACACGCTCCACATCCAACAGGAACAGCCCTGCCCCAGTCAAAGGCCCCTGGGTGGCCTACAATGGCCCGACGCCCACAATCGCAGACATGGAGCAGGGCTGCTGTGTTAAGAGGATCTATGCTGGAGGGGACCAGAGCTTTGCCCACTGTTACACTCCCCAGAACCCTCTGGTGCCTGACGACATCAGAATACCAGATCCCAGAAGACACATATGCACCTTATCTGCTGATCTCACTCAGAGATGGCTGAACCATTATACACACGGAAGACTCCCACAAGAGATTTCCAACGAGATCGATCTTGTGTTTTCCTCTGCAAGTTGCCTCAATGGAAGCTTTCTGGCTGGCAGCCATCCAGATCACTACAACACGAGCAGTAAATGCTCAGGGGTGGACATGAACATGGCTCGCCTCTTGTTTCACAGAGTCGTTCAACATGACTATCCAGAAATTGCACAGCAGATTGCAGCCAGTCTGGAAAAGAACCTGATTCCCAGACTAAGCAGCTCCCCTCCAGACATCGAGGCCCTGAGACTCtacctcaccctgccagagtgtCCTCTCTTCAGCGACCCAAACACATACGTGACTCTGGCCATCCCTTTTGCCAAGGCATTCATCAGTCTGAAAGAGGCTCCACTGAAGGTGCTTGGCAACTGGTGGTCTCAATTCGAAGCCCCAGTCTTCCAGAGGCTTGTGGAGCTGTATAAGGTGGTGGTGGTTTACCTGCTGAAGATGCACAAGGTGGGAGTCCCCCACTCAGAGCAGAGGGTCTTCACCTGCTTCCTGGACACGGCACTCAAGCTTCTGGAGATCCTGCACGCTGTGAACGAAAGAGCCGGACATATCATACAGTACGACAAATTCTACATTCACGAGTTGGATGACCTGATAGACATCCGAAACGACTACATCACATGGATTCAACAGCAGATGTACTCTATGGCTCATGACAGTGCGGTCACCCTCTGTAAGTACCCCTTCGTGTTTGATGCCCAGGCAAAGACCACCCTGCTTCAAACTGATGCTGTTATTCAAATGCAGATGGCAGTGGACCAGGCACAGCGGCAGAACTTCAGCTCCATGTTCCTTCCGGTGGTGGAGTCTGTTAACCCCTGCCTCATCCTCATTGTGAGGAGGGAGAACATCGTCGGGGACACCATGGAGGTCCTCAGGAAGTCCAAGAACGTCGACTACAAGAAACCTCTGAAGGTGATCTTTGTTGGAGAAGAGGCGGTCGATGCAGGGGGTGTGCGGAAGGAGTTCTTCCTTCTCATCATGAGAGAGCTCCTGGACCCCAAATACGGCATGTTCCGATACTACGAGGAGTCCAGGCTGATCTGGTTTGCAAACAAGACGTTTGAGGACATTGACCTGTTCCACCTCATCGGGGTCATCTGTGGGCTGGCCATCTACAACCTCACCATCGTGGACCTCCACTTCCCAGTGGCCCTGTACAAGAAGCTGCTGAAGAGGAACCCCACGTTGGATGATCTTAAGGAGCTGATGCCTGATGTGGGGAGGAGTCTGCAGCAGTTACTAGACTACACAGAGGATGATGTTGAAGACACATTCTGCTTGAACTTCACCGTTACAGTGGAAAACTTTGGCGCCACAGAGGTCTTAGAACTGGTTCCAAATGGCATGGATATCTGTGTTGACAACTCAAACAGGCCTGAGTTTGTCTCTGCATACGTGGACTACATCTTCAATAAATCAGTGGCTGCGCTTTTCGAGTCCTTTTTCGCAGGCTTCCACAAAGTGTGTGGTGGCAAAGTCCTGGAGCTGTTCCAGCCCAACGAACTGCAGGCCATGGTCATTGGCAACACCAACTACGATTGGAAAGAGCTTGAAAAGAGCACTGAGTATAAAGGAGAGTATTGGGCTGAAAATCCAACCATTAAGTTCTTCTGGGAGGTGTTCCATGATCTCTCTTTGGAGAAGAAGAAGCTCTTTCTCTTGTTTCTCACAGGAAGTGACCGCATTCCCATCCTGGGCATGAAAAGCCTGAAGCTGGTGATCCAACCCACGGGAGgcggagaacactacctgcccgttGCACACACCTGCTTCAACCTATTGGACCTGCCCAAATACAGCAGCCGGGAGACGCTCCAAAACAAGCTTCTCCAAGCCATAGATCACAATCAAGGTTTCAACCTGGCCTAACGAATGGCACACAGACAATGCCTAGCTCCACCCAGACTGTCACATGCACACGTCTTTGCCCCGTCAACTGACTCGATTCCTGCTTTAAGACTGCAGCACTGTCACTGGCGTGAAATGGAACAGACTAAGCAGCATTTGCAGGTGGGCAAATGGTTATGCAAGAGGCTTGAGGGCTTTCTAATTCAAGGCCAGTCTTTGCTTTGATATTTCAGCATCATTTACAGTTTCACACGTCACAATATTGAAGACCCAGTTGAGTTCAAATTCAATTCATATTGTTTGATATTTCTCTTGTAGATTTAGCTTTTACCCGTGTTTGGATATAAACCTGTCTAAATAGGCCAAAGTTCTGGTATAAAATCTTTGAGCTCAGCTGGCACAAGATAGCACTGTTCATGAATTAAATGAATCTTCTACTTTGGCAATTTCTACCATGAATAGAAATGAATCTACCATGGTAAAAACATGGTATGAATGTGAGCATTTGATGTTGCGTGGAAGTTCTTGGCTGTAAGCCTTAAAACTagacaaataaaaaatgaaacattACAGCCATTGGTATTGTGTGTATGACCAAGTGTAAATGAATTTTGGCTTCAACTGTTAGAATGCTGCTCTAAAACATTGCATTTTTGTGGAAATTATAGGCTAGTACCAACATGACTTTTGTTTATCAATATAATTCCTCTAAAATGTGTATTGCGATAACACTTCGGTGCTTTATAATTACTTCACAAAAACTACACTAAACTGTAGATAACGCTCACGTTATACATCACTTAATGGATTTCTATTCCATGTGTATGTGGCATTGGGGAAAGTAtgattgaagaaaaaaaacatgtaaagtgttggtcccatgtttcatgagctgaaataaaatatcccagacattttccatacgca
>XM_021607015.2
CTTGATTAACAGCCAGTTAGAACGCAGGCACTGCCGTGCTGCACGCGGACAACTGAACGGTGGATCGCTGTAGCTagatggctagctaacgttaactagctaaaaATGTTAACTAACTAGCTGACTTGTGTCGTGAAATAATAGTACAGCCCTTATAATTGGAGGCATCATAATGTTCCCTTTTTAGATGATTCCCCAGTCACAGATGGCCCAAGTGGTGTACACAACTTGATATCAGGACTTCTTTGCCACAACGGACTGTAATCCTGTTGACCTGGTCCACACCAGGAGTGGGGCTAGAGGGGGGGCGGTGGCAATGCTGTGTTGGGGAAATGCTTCCTTCGGTCAGCTAGGTTTGGGCGGGATCGATGAGGAGATTGTGGTGGAGCCCCGGAAATGTGATTTCTTTCATGGGAAGCAGGTGTGTGATATCGGATGTGGCCGACGGCACACCACATTTCTACTGGGAGACGGGACTGTGTACACCTGTGGCTGCAATGACATTGGGCAGCTGGGGCACGAGAAGTCTCGAAAGAAACCAGAGCAGGTTGTGGCACTAGATGCACAGAACATTGTGGCAGTGTCATGTGGGGAGGCCCATACTCTCGCACTGAATGACAAAGGACAAGTGTTTGCATGGGGCTTGGCCACAGATGGACAGCTGGGCCTTGCAAACTTCGAAGAATGTGTACGTGTGCCCAGaaacATCAAGAGTTTATCAGATGTAGAAATTGCTCAGGTAGCCTGTGGATATCGGCACTCCCATGCTCTGTCTAGAGGAGGCCAAGTCTATTCATGGGGACAAAACCGATACGGACAACTAGGGCTGGGAGTAGCTGGACAAGGCATCTCTACTCCCCAAGTCATCCAGTCTTTACAGGGGATTCCCTTCATCCAGATCTCAGCAGGGGGTGCTCACAGCTTTGCCCTCACATTCTCAGGGGCCGTCTTTGGCTGGGGGCGCAACAAGTTTGGGCAACTCGGCCTCAATGACAACAATGATCGGTATTATCCAGCCCAGCTCAAGTCCCTCAGGTCACAGAGGGTTATCTACATCTGCTGTGGGGAGGACCACACTGCCGCACTTACAAAGGAAGGAGGTGTGTTTACATTTGGAGCAGGAGGGTATGGCCAGCTTGGACATAACACTACAAACCATGAGATCAACCCCAGGAAGGTGTTTGAGCTCATGGGAAATGTAGTCACACAGATATCCTGTGGAAGACAGCACACTCTGGCCTTCATCCCCTCCTCTGGAAAGATGGATTCATTTGGGCTGGGAGGGAACGGGCAGCTCGGTACACGCTCCACATCCAACAGGAACAGCCCTGCCCCAGTCAAAGGCCCCTGGGTGGCCTACAATGGCCCGACGCCCACAATCGCAGACATGGAGCAGGGCTGCTGTGTTAAGAGGATCTATGCTGGAGGGGACCAGAGCTTTGCCCACTGTTACACTCCCCAGAACCCTCTGGTGCCTGACGACATCAGAATACCAGATCCCAGAAGACACATATGCACCTTATCTGCTGATCTCACTCAGAGATGGCTGAACCATTATACACACGGAAGACTCCCACAAGAGATTTCCAACGAGATCGATCTTGTGTTTTCCTCTGCAAGTTGCCTCAATGGAAGCTTTCTGGCTGGCAGCCATCCAGATCACTACAACACGAGCAGTAAATGCTCAGGGGTGGACATGAACATGGCTCGCCTCTTGTTTCACAGAGTCGTTCAACATGACTATCCAGAAATTGCACAGCAGATTGCAGCCAGTCTGGAAAAGAACCTGATTCCCAGACTAAGCAGCTCCCCTCCAGACATCGAGGCCCTGAGACTCtacctcaccctgccagagtgtCCTCTCTTCAGCGACCCAAACACATACGTGACTCTGGCCATCCCTTTTGCCAAGGCATTCATCAGTCTGAAAGAGGCTCCACTGAAGGTGCTTGGCAACTGGTGGTCTCAATTCGAAGCCCCAGTCTTCCAGAGGCTTGTGGAGCTGTATAAGGTGGTGGTGGTTTACCTGCTGAAGATGCACAAGGTGGGAGTCCCCCACTCAGAGCAGAGGGTCTTCACCTGCTTCCTGGACACGGCACTCAAGCTTCTGGAGATCCTGCACGCTGTGAACGAAAGAGCCGGACATATCATACAGTACGACAAATTCTACATTCACGAGTTGGATGACCTGATAGACATCCGAAACGACTACATCACATGGATTCAACAGCAGATGTACTCTATGGCTCATGACAGTGCGGTCACCCTCTGTAAGTACCCCTTCGTGTTTGATGCCCAGGCAAAGACCACCCTGCTTCAAACTGATGCTGTTATTCAAATGCAGATGGCAGTGGACCAGGCACAGCGGCAGAACTTCAGCTCCATGTTCCTTCCGGTGGTGGAGTCTGTTAACCCCTGCCTCATCCTCATTGTGAGGAGGGAGAACATCGTCGGGGACACCATGGAGGTCCTCAGGAAGTCCAAGAACGTCGACTACAAGAAACCTCTGAAGGTGATCTTTGTTGGAGAAGAGGCGGTCGATGCAGGGGGTGTGCGGAAGGAGTTCTTCCTTCTCATCATGAGAGAGCTCCTGGACCCCAAATACGGCATGTTCCGATACTACGAGGAGTCCAGGCTGATCTGGTTTGCAAACAAGACGTTTGAGGACATTGACCTGTTCCACCTCATCGGGGTCATCTGTGGGCTGGCCATCTACAACCTCACCATCGTGGACCTCCACTTCCCAGTGGCCCTGTACAAGAAGCTGCTGAAGAGGAACCCCACGTTGGATGATCTTAAGGAGCTGATGCCTGATGTGGGGAGGAGTCTGCAGCAGTTACTAGACTACACAGAGGATGATGTTGAAGACACATTCTGCTTGAACTTCACCGTTACAGTGGAAAACTTTGGCGCCACAGAGGTCTTAGAACTGGTTCCAAATGGCATGGATATCTGTGTTGACAACTCAAACAGGCCTGAGTTTGTCTCTGCATACGTGGACTACATCTTCAATAAATCAGTGGCTGCGCTTTTCGAGTCCTTTTTCGCAGGCTTCCACAAAGTGTGTGGTGGCAAAGTCCTGGAGCTGTTCCAGCCCAACGAACTGCAGGCCATGGTCATTGGCAACACCAACTACGATTGGAAAGAGCTTGAAAAGAGCACTGAGTATAAAGGAGAGTATTGGGCTGAAAATCCAACCATTAAGTTCTTCTGGGAGGTGTTCCATGATCTCTCTTTGGAGAAGAAGAAGCTCTTTCTCTTGTTTCTCACAGGAAGTGACCGCATTCCCATCCTGGGCATGAAAAGCCTGAAGCTGGTGATCCAACCCACGGGAGgcggagaacactacctgcccgttGCACACACCTGCTTCAACCTATTGGACCTGCCCAAATACAGCAGCCGGGAGACGCTCCAAAACAAGCTTCTCCAAGCCATAGATCACAATCAAGGTTTCAACCTGGCCTAACGAATGGCACACAGACAATGCCTAGCTCCACCCAGACTGTCACATGCACACGTCTTTGCCCCGTCAACTGACTCGATTCCTGCTTTAAGACTGCAGCACTGTCACTGGCGTGAAATGGAACAGACTAAGCAGCATTTGCAGGTGGGCAAATGGTTATGCAAGAGGCTTGAGGGCTTTCTAATTCAAGGCCAGTCTTTGCTTTGATATTTCAGCATCATTTACAGTTTCACACGTCACAATATTGAAGACCCAGTTGAGTTCAAATTCAATTCATATTGTTTGATATTTCTCTTGTAGATTTAGCTTTTACCCGTGTTTGGATATAAACCTGTCTAAATAGGCCAAAGTTCTGGTATAAAATCTTTGAGCTCAGCTGGCACAAGATAGCACTGTTCATGAATTAAATGAATCTTCTACTTTGGCAATTTCTACCATGAATAGAAATGAATCTACCATGGTAAAAACATGGTATGAATGTGAGCATTTGATGTTGCGTGGAAGTTCTTGGCTGTAAGCCTTAAAACTagacaaataaaaaatgaaacattACAGCCATTGGTATTGTGTGTATGACCAAGTGTAAATGAATTTTGGCTTCAACTGTTAGAATGCTGCTCTAAAACATTGCATTTTTGTGGAAATTATAGGCTAGTACCAACATGACTTTTGTTTATCAATATAATTCCTCTAAAATGTGTATTGCGATAACACTTCGGTGCTTTATAATTACTTCACAAAAACTACACTAAACTGTAGATAACGCTCACGTTATACATCACTTAATGGATTTCTATTCCATGTGTATGTGGCATTGGGGAAAGTAtgattgaagaaaaaaaacatgtaaagtgttggtcccatgtttcatgagctgaaataaaatatcccagacattttccatacgca

Function

symbol description
herc4 Predicted to enable ubiquitin-protein transferase activity. Orthologous to human HERC4 (HECT and RLD domain containing E3 ubiquitin protein ligase 4).

NR:

description
probable E3 ubiquitin-protein ligase HERC4

GO: NA

KEGG:

id description
K10615 HERC4; E3 ubiquitin-protein ligase HERC4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607008.2 False 4477 mRNA 0.48 25 61517953 61540937
XM_021607015.2 True 4375 mRNA 0.49 25 61518358 61540937

Neighbor

gene id symbol gene type direction distance location
LOC110526212 LOC106576837 coding upstream 12648 61501014 ~ 61505305 (+)
LOC110526206 fam83h coding upstream 29526 61437607 ~ 61488427 (+)
lrrfip2 lrrfip2 coding upstream 116146 61342105 ~ 61401807 (+)
LOC110526122 LOC106576844 coding upstream 290828 61117250 ~ 61227125 (+)
LOC110526134 NA coding upstream 385948 61091580 ~ 61132005 (+)
LOC110526236 sirt1 coding downstream 8244 61549181 ~ 61561338 (+)
LOC110526250 LOC106576834 coding downstream 20675 61561612 ~ 61571769 (+)
mypn mypn coding downstream 31864 61572801 ~ 61623278 (+)
atoh7 atoh7 coding downstream 88988 61629925 ~ 61631527 (+)
pkd2l1 pkd2l1 coding downstream 94226 61635163 ~ 61646181 (+)
G67897 NA non-coding upstream 6118 61511635 ~ 61511835 (+)
G67856 NA non-coding upstream 89389 61423275 ~ 61428564 (+)
G67855 NA non-coding upstream 100226 61417130 ~ 61417727 (+)
G67847 mlh1 non-coding upstream 107337 61409429 ~ 61410616 (+)
G67818 NA non-coding upstream 114603 61365662 ~ 61403350 (+)
G67870 NA non-coding downstream 584 61541521 ~ 61544200 (+)
G67921 NA non-coding downstream 43527 61584464 ~ 61584663 (+)
G67938 NA non-coding downstream 52640 61593577 ~ 61593781 (+)
G67939 NA non-coding downstream 52957 61593894 ~ 61594121 (+)
G67806 LOC106581772 other upstream 202701 61314874 ~ 61315252 (+)
G66188 NA other upstream 1575889 59941486 ~ 59942064 (+)
G65442 NA other upstream 2192824 59324636 ~ 59325129 (+)
G64338 NA other upstream 2817574 58699296 ~ 58700379 (+)
G64315 NA other upstream 2852047 58665334 ~ 58665906 (+)
G67930 mcmbp other downstream 188828 61729765 ~ 61733388 (+)
G70011 NA other downstream 1734026 63274963 ~ 63275296 (+)
LOC110526969 stk32c other downstream 3268652 64809255 ~ 64946164 (+)
LOC110527164 LOC106576754 other downstream 4374798 65915581 ~ 65922285 (+)
G73515 NA other downstream 4746742 66287679 ~ 66288469 (+)

Expression


Co-expression Network