LOC110526243 (LOC106576835)


Basic Information

Item Value
gene id LOC110526243
gene name LOC106576835
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61541684 ~ 61544247 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607047.2
CACTTCATAAGACCGTTACTTTGTGAGTGGACcgttgactctgtcaatcaagtCAAGGTTGGAAATAAATGGGGTCATTTCAGTCCAGCAGATTGTTCAGATCACACGCGGTAGTTTAAGCGAAAGTGAATTCATTATGGCAGGCAGGTTTTTACTCCGTACCTGTACAACCTTGCAATTGGCAAGAAACAATGTTGTGGCAAGATCACTGCCACGCACTATGACCACATTAAAAGGGATTCCAACCGATGAGGAACAGGCTACTGGACTCGAGCGACGTGCCTTGCAGGCACTGAAGAAAGGAAAGGATCCTTGGAGCATTCTGAAACCCAAGGAGTATGCTGGAACCAAAGAAGACCCTCACATTGTCCCAGGCATTAGTGACAAACGGCTGGTAGGCTGTCTGTGTGAAGAGGACAACACTGCCATTGTGTGGTTTTGGCTCCATGAGGGGAAGCCCCAGCGCTGTCCCGAATGTGGGTCCCACTATCAGTTTGTCCGTCATGAGCTGCCCCACTGAAACAGCCACCAAGCTCCTTGCCACTGGACCAGGATAACCTGCCTCATTAACTCACCCTCTACCCTGAACAATGTGTGCATTTCAGCTGATTAATATGTAGATTAACATTAAAATACTGTCAATTTGAA

Function

NR:

description
cytochrome c oxidase subunit 5B, mitochondrial-like

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005740 mitochondrial envelope cellular_component
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG:

id description
K02265 COX5B; cytochrome c oxidase subunit 5b

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607047.2 True 648 mRNA 0.47 4 61541684 61544247

Neighbor

gene id symbol gene type direction distance location
LOC110526202 LOC106576840 coding downstream 112566 61418379 ~ 61429118 (-)
mlh1 mlh1 coding downstream 123610 61403030 ~ 61418074 (-)
abcc2 mrp2 coding downstream 229707 61246276 ~ 61311977 (-)
LOC118964986 LOC106576846 coding downstream 824384 60715944 ~ 60717300 (-)
LOC110532522 LOC106576846 coding downstream 834638 60695135 ~ 60707046 (-)
dnajc12 djc12 coding upstream 431 61544678 ~ 61548916 (-)
tial1 tial1 coding upstream 108061 61652308 ~ 61676942 (-)
LOC110526339 mcmbp coding upstream 173207 61717454 ~ 61733606 (-)
csgalnact2 cgat2 coding upstream 202556 61746803 ~ 61755455 (-)
ret LOC106576823 coding upstream 214123 61758370 ~ 61789952 (-)
G68713 NA non-coding downstream 31966 61509003 ~ 61509718 (-)
G68705 NA non-coding downstream 41638 61499805 ~ 61500046 (-)
G68704 NA non-coding downstream 42235 61499231 ~ 61499449 (-)
G68703 NA non-coding downstream 42700 61498674 ~ 61498984 (-)
G68701 NA non-coding downstream 45093 61496261 ~ 61496591 (-)
G68742 LOC106576834 non-coding upstream 17678 61561925 ~ 61562283 (-)
G68744 NA non-coding upstream 20466 61564713 ~ 61564933 (-)
G68745 NA non-coding upstream 20986 61565233 ~ 61565457 (-)
G68746 NA non-coding upstream 21235 61565482 ~ 61565739 (-)
G68747 NA non-coding upstream 22306 61566553 ~ 61566831 (-)
LOC110526097 LOC106576849 other downstream 1080450 60430184 ~ 60495300 (-)
LOC110525695 LOC106576879 other downstream 2386539 59144373 ~ 59199471 (-)
G65147 NA other downstream 2756067 58784742 ~ 58785617 (-)
G63328 NA other downstream 4143196 57397194 ~ 57398488 (-)
G63093 NA other downstream 4478836 57035667 ~ 57062848 (-)
G68736 NA other upstream 138031 61682278 ~ 61686308 (-)
LOC110526417 LOC106576819 other upstream 437484 61981652 ~ 61983330 (-)
G69210 NA other upstream 867275 62411522 ~ 62418296 (-)
G70013 NA other upstream 1732961 63277208 ~ 63277752 (-)
LOC110526867 LOC100136521 other upstream 2825655 64369803 ~ 64384521 (-)

Expression


Co-expression Network