Gene
RNA
| Item | Value |
|---|---|
| gene id | sec23ip |
| gene name | LOC106576824 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048565.1 |
| NCBI id | CM023219.2 |
| chromosome length | 95772356 |
| location | 61733628 ~ 61745157 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| SEC23-interacting protein-like isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021607213.2 | False | 3692 | mRNA | 0.50 | 17 | 61733628 | 61745157 |
| XM_021607206.2 | True | 3694 | mRNA | 0.50 | 17 | 61733629 | 61745157 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| inpp5f | LOC106576825 | coding | upstream | 23559 | 61687566 ~ 61710069 (+) |
| bag3 | bag3 | coding | upstream | 49460 | 61677780 ~ 61684168 (+) |
| pkd2l1 | pkd2l1 | coding | upstream | 87447 | 61635163 ~ 61646181 (+) |
| atoh7 | atoh7 | coding | upstream | 102101 | 61629925 ~ 61631527 (+) |
| mypn | mypn | coding | upstream | 110350 | 61572801 ~ 61623278 (+) |
| fam204a | LOC106576816 | coding | downstream | 319093 | 62064250 ~ 62097505 (+) |
| LOC110526440 | LOC106576815 | coding | downstream | 408192 | 62153349 ~ 62168687 (+) |
| LOC110526492 | LOC106576813 | coding | downstream | 615832 | 62360989 ~ 62366199 (+) |
| LOC110526511 | LOC100194723 | coding | downstream | 638533 | 62383690 ~ 62390008 (+) |
| LOC110526533 | LOC106576809 | coding | downstream | 690125 | 62435282 ~ 62492911 (+) |
| G67982 | NA | non-coding | upstream | 53020 | 61680139 ~ 61680608 (+) |
| G67968 | NA | non-coding | upstream | 86956 | 61646440 ~ 61646672 (+) |
| G67955 | NA | non-coding | upstream | 106497 | 61626927 ~ 61627131 (+) |
| G67905 | NA | non-coding | upstream | 107482 | 61624717 ~ 61626146 (+) |
| G67993 | ret | non-coding | downstream | 16306 | 61761463 ~ 61762278 (+) |
| G68018 | NA | non-coding | downstream | 47431 | 61792588 ~ 61792802 (+) |
| G68019 | NA | non-coding | downstream | 47892 | 61793049 ~ 61793884 (+) |
| G68046 | NA | non-coding | downstream | 86868 | 61832025 ~ 61948733 (+) |
| G68105 | pdli1 | non-coding | downstream | 157118 | 61902275 ~ 61916554 (+) |
| G67930 | mcmbp | other | upstream | 240 | 61729765 ~ 61733388 (+) |
| G67806 | LOC106581772 | other | upstream | 418376 | 61314874 ~ 61315252 (+) |
| G66188 | NA | other | upstream | 1791564 | 59941486 ~ 59942064 (+) |
| G65442 | NA | other | upstream | 2408499 | 59324636 ~ 59325129 (+) |
| G64338 | NA | other | upstream | 3033249 | 58699296 ~ 58700379 (+) |
| G70011 | NA | other | downstream | 1529806 | 63274963 ~ 63275296 (+) |
| LOC110526969 | stk32c | other | downstream | 3064432 | 64809255 ~ 64946164 (+) |
| LOC110527164 | LOC106576754 | other | downstream | 4170578 | 65915581 ~ 65922285 (+) |
| G73515 | NA | other | downstream | 4542522 | 66287679 ~ 66288469 (+) |
| LOC118965274 | LOC106576739 | other | downstream | 4675338 | 66417495 ~ 66424081 (+) |
