ret (LOC106576823)


Basic Information

Item Value
gene id ret
gene name LOC106576823
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61758370 ~ 61789952 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981852.1
TACATCGCTGAATATTAGCTTGATTTAAACCTCCCCCTGCACTGCTCGCTACAGACGGTCAAGCAGCAAAAGCTGCAGAGACCAGCCCAATGGGACAGGCACTCCGTCAATGTACTTCATTGTTTGCCCGGAGGAGCTGTGTGCGGGAAAACTAGTACAGTACTCTTGCTTACGTTTTTATCCATAGGTTCTCTACCGTTATTTTATACCAGTGGTCTCTACGCGTGATTTTTGATTATTCATCCTGCAACTTTCACTTATGATTGGCGATTATGGGGCAAACGTGTGGTTTCTCTCTGGGAAACATCGTTTTGGTCCTCCTGCTGTTGTGTGAAGGGTCAGTTGGGCTCTACTTCCCCCAGAATCAGTACAAGGAGACTGTGTACGTCGGGCAGTCTGCAGGGACACCCGTGCTCCAGGTCCACGCCATGGTGGAGAGCGACTCTCAACGGCCCCACTTCTACCTGTGCTACCTGAGGCCTCCAACCTATGCCCCATGGTTCCACCTGGACGAGACCACAGGGATACTCTCCATGAATAAGACCCTGGAGTGGAGCGACTTTGACTCTGCATATAAGTTTTGGAAGCTGCCGCTGAGTGTCATTGCTGCGACCAGACCGTTGAAGAAGTTCCTCTGTGGCCTCGGCCACCCCACCGTACAAGTCAGCCTGACCTTCATCAATGACACGGCGCCACCGTgtggccagaccagaccagagctgaAGAAACTGTGCTTCCCTGACAAAGACCTGAGCTCCCACATCAAGGAGAACAGGTTCCCCGGGGCCCTCCGCCAGCTCAGACAGCTCACCAGGCTTAACGTCTGCCCCAACTACACCATCTCCTACAGTGTAGAATCCGATGTTCCGGCCCCATTCGCTGTGAATGAAAACACCACTGAGTTGGTAGTGACTGCGCCGTTGGACCGCGAGGAGAGCGAGACATACAGTCCCATGCTGATCTGCACAGTGCAGACTGACACAATGGTAGACACCTTTTTTGTTACACTGCATATCAACGTCTACGACGAGGACGACAATGCGCCGTATGTCAGTGGAACAGACACAGAGGACGTGGTGCTGGAATTTGATCGCAAGCAGGGAAGTTCTTTTGGCAACTTGGTTGTCTATGATAGAGACACAACACCCAGGTATCCCAAATCCCAGAGTCAGAATAGATTTGTCGGAAATATGATGACCAATGACTCATGGATAAATGAAATGTTCACCATAGAGTACTCTTTCAAAGAAGAGAAGGCCATTTTTGGCAACGTCCGAGGCACTGTTCATGAGTTCCGGCTTGCACTGAAGAAGAATTTGTCTGTAACCGAAAATAGGACCTTCCAGCTGGATTACCTGGTCAATGACACTACATACCCCGGTCCAGAGGGAACTGTGATGCTGCACTACAATATCACCGTCTTACCTGTCCCCATTCTCTTCACCAATGTGACATACCTCTTCGCACTAACACGTAAAGCTAATGTCTACTCCCAGGTCGGTAGGATTTGTGTGGACAACAGCCTGAAGTTCCAGGGCATCAATGTCACATACCGGCTAgtagtagcagagaaaacagggAATGTGTCCGACGACGTGCAGTCATGCTACGCTGCGATTAGCATCGCACAGAGCCTCAAGGACATGGTGGGGGTGCTATATGTGAACGACACAGAGGCGCTTCGCAGGCCAGAGTGCCAGGACCTGCAGTATGTGGTTATTGCTCAAGAGCAACAGAATCTGCTGCAGGCTAGCACTCAGATCCTCGTTGTGCTCGATAGCGATAttGATAAGCAGGGCCTAGAGGACCAGCAGTTCCTCTCCTGTGCAAAGGGAAGACATCGTGGGGATTGTGAGACCATCAGAGGCCTGGGGGCAACCACAGGGAGGTGCCAATGGAGACAGGGCTCTGCAAAAGGAATATCAGAAAGTTATTCCACCTGCTCCCCTGACCTCCGCACGTGCCCTGATGGCTTTTGTGATGCAGTTGAAAGCAAAGACGCATCAATATGTCCTCAGGATTGTACACTTGAACCCGTTATAGGTGGTCATGAGAAGGGCATCATGTCTGGCATTAGAGCTGGCCATGGAACCTGCTACTGCTACTCTGAAAAATGCTTCTGTGAGAAGGATGATATAGAGGAGGCCATGTGTGACGAGGTCTGCAAGACCATCATTGCCACTGCCGTGCTGCTCTCCTTCATCGTCTCCATTCTCCTGTCCTCCTACTTCATCCATCGTTACCACAAGAACTCCCCCAAGCCGCCCATAACCTCGGCTGAGATGACCTTCCGGCGGCCCGCACAATCCTACCCAATCAGCTACTCTGCTAACAACATGCGCCGTGGCTCGTTGGACTCCATGGAGAACCAAGTAGCCATTGACACCTTCAAAATACCTGAGGATCCCAAATGGGAATTTCCACGCAAAAACCTGGTGCTGGGCAAAACGTTAGGAGAAGGGGAGTTTGGGAAGGTTGTCAAGGCGACTGCATTCCGGCTGAAAGGAAAGGCTGGTTACACCACAGTAGCTGTGAAAATGCTTAAAGACCACGCCTCACATAGTGAACTGCGGGACCTCCTGTCAGAATTCACCTTACTGAAGCAAGTCAACCATCCACACGTCATCAAGATGTACGGAGCCTGCAGCCAGGATGGTCCAATGTATCTGATTGTAGAATATGCCAAATATGGGTCACTGCGCAACTTCCTGCGTGAGAGCCGAAAGGTGGGACCCAGCTACATGTCAGGCAACGATGCCAACCGCAACTCGAGCTACCTGGAGAATCCAGATGAGAGGGCACTCACCATGGGCGACCTGATCTCTTTCACCTGGCAGATCTCCAGGGGCATGCAGTACCTGGCTGAAATGAAGCTTGTTCACAGGGACCTCGCTGCAAGAAATGTCCTAGTTGCGGAGGGCCGTAAGATGAAGATTTCAGACTTTGGTTTGTCCCGGGACGTGTATGAGGAAGACTCATATGTGAAGAGGAGCAAGGGTCGAATCCCAGTGAAATGGATGGCAATAGAATCCTTGTTTGATCACATTTACACAACACAAAGTGACGTCTGGTCCTTTGGTGTGCTGTTGTGGGAGATTGTGACACTGGGTGGAAACCCGTACCCAGGCATCGCCCCTGAACGCCTCTTTAACCTCCTCAAGACTGGCTACAGGATGGAGAAACCAGAAAACTGTACTGAGGAAATGTATAATCTGATGCTTCGATGCTGGAAACAGGAGTCAAACAAAAGGCCCATATTCATAGACATCAGCAAAGAACTGGAGAAGATGATGGTGAAAAACCGGGATTACCTGGACCTGGCAGCGTCTACGCCAGCCGACGCCCTACTGTACGACGACGCCCTCTCCGAAGAGGACACACCCCTAGTGGACAGCAATAATGCCCCTCTCCCTCGAACCATTCCCTCCACATGGATTGAAAACAAGCTCTATGGCATGTCATACCCGAACTGGCCTGAGAAGAGCCCCGTACTGCTCAACAGACTTGATGCCACTAACCCAGTCTTTACAAGATATGCCAATGATAGCGTTTATGCAAACTGGATGGCTTTGCCTTCACCCGCAAAAATTGTGGAGAAGATTGATAGTTAAAAGCAAAAACCATTGTCGAAAATAAAGATTCCTAATGGGGTAGAtgtgtatatttatataaaacTGTACATATACAATCTAAAGTTGGTGCCCTTTCATTTCTGTTGCACGGGGTATTCCAAGTTAAAACTGGGGGATTTCAAAAGTGCATTTGCTGAAAAATGGCTGGAATTACATAGACCGTGTTTCAAGCAGCTCTTCGGTATGTTAATCATTACCTCAAAGTCATGTTGGCCAAGTATCATTGCATGACCGTGTACCAGGTTGTATGTCAATGTTAATGTCTTTCAAGTGCCTGTGCCGCTTCTACGATAGCCTCCAATTAGTAGTGTACGACTGTGAAGATGTTGTTTCCAGACCAGAAATTAAAGGGGACTTCTTTACCGTCACCTGTCCTATAATGGTAGACCTGTGAGGTTAAGATGGACAAAGAGTGGACACTGAGTTCATCTAGAAAAACGGCAAAGTTTCTACTTCATATGATCATGTTCTTTGAAATGTAAAAGCCACTTTTGTCTTTCCACTTTAATAGAATGTGGGCATGTTCGGTGTCAAAGCTGCAGCTCACCATTTGATTCCTCGTAATGGCAATCTTTGTGCAACAGTTAGCTAGGATTTTTGAAAACAAATGAGTGTTATCAATTGTTGTTTTATCATTACGTGATTATGTTGCAATCAATAAAAGTTCAAATATATGCGATCTATTTATA
>XM_036981853.1
ATACATCGCTGAATATTAGCTTGATTTAAACCTCCCCCTGCACTGCTCGCTACAGACGGTCAAGCAGCAAAAGCTGCAGAGACCAGCCCAATGGGACAGGCACTCCGTCAATGTACTTCATTGTTTGCCCGGAGGAGCTGTGTGCGGGAAAACTAGTACAGTACTCTTGCTTACGTTTTTATCCATAGGTTCTCTACCGTTATTTTATACCAGTGGTCTCTACGCGTGATTTTTGATTATTCATCCTGCAACTTTCACTTATGATTGGCGATTATGGGGCAAACGTGTGGTTTCTCTCTGGGAAACATCGTTTTGGTCCTCCTGCTGTTGTGTGAAGGGTCAGTTGGGCTCTACTTCCCCCAGAATCAGTACAAGGAGACTGTGTACGTCGGGCAGTCTGCAGGGACACCCGTGCTCCAGGTCCACGCCATGGTGGAGAGCGACTCTCAACGGCCCCACTTCTACCTGTGCTACCTGAGGCCTCCAACCTATGCCCCATGGTTCCACCTGGACGAGACCACAGGGATACTCTCCATGAATAAGACCCTGGAGTGGAGCGACTTTGACTCTGCATATAAGTTTTGGAAGCTGCCGCTGAGTGTCATTGCTGCGACCAGACCGTTGAAGAAGTTCCTCTGTGGCCTCGGCCACCCCACCGTACAAGTCAGCCTGACCTTCATCAATGACACGGCGCCACCGTgtggccagaccagaccagagctgaAGAAACTGTGCTTCCCTGACAAAGACCTGAGCTCCCACATCAAGGAGAACAGGTTCCCCGGGGCCCTCCGCCAGCTCAGACAGCTCACCAGGCTTAACGTCTGCCCCAACTACACCATCTCCTACAGTGTAGAATCCGATGTTCCGGCCCCATTCGCTGTGAATGAAAACACCACTGAGTTGGTAGTGACTGCGCCGTTGGACCGCGAGGAGAGCGAGACATACAGTCCCATGCTGATCTGCACAGTGCAGACTGACACAATGGTAGACACCTTTTTTGTTACACTGCATATCAACGTCTACGACGAGGACGACAATGCGCCGTATGTCAGTGGAACAGACACAGAGGACGTGGTGCTGGAATTTGATCGCAAGCAGGGAAGTTCTTTTGGCAACTTGGTTGTCTATGATAGAGACACAACACCCAGGTATCCCAAATCCCAGAGTCAGAATAGATTTGTCGGAAATATGATGACCAATGACTCATGGATAAATGAAATGTTCACCATAGAGTACTCTTTCAAAGAAGAGAAGGCCATTTTTGGCAACGTCCGAGGCACTGTTCATGAGTTCCGGCTTGCACTGAAGAAGAATTTGTCTGTAACCGAAAATAGGACCTTCCAGCTGGATTACCTGGTCAATGACACTACATACCCCGGTCCAGAGGGAACTGTGATGCTGCACTACAATATCACCGTCTTACCTGTCCCCATTCTCTTCACCAATGTGACATACCTCTTCGCACTAACACGTAAAGCTAATGTCTACTCCCAGGTCGGTAGGATTTGTGTGGACAACAGCCTGAAGTTCCAGGGCATCAATGTCACATACCGGCTAgtagtagcagagaaaacagggAATGTGTCCGACGACGTGCAGTCATGCTACGCTGCGATTAGCATCGCACAGAGCCTCAAGGACATGGTGGGGGTGCTATATGTGAACGACACAGAGGCGCTTCGCAGGCCAGAGTGCCAGGACCTGCAGTATGTGGTTATTGCTCAAGAGCAACAGAATCTGCTGCAGGCTAGCACTCAGATCCTCGTTGTGCTCGATAGCGATAttGATAAGCAGGGCCTAGAGGACCAGCAGTTCCTCTCCTGTGCAAAGGGAAGACATCGTGGGGATTGTGAGACCATCAGAGGCCTGGGGGCAACCACAGGGAGGTGCCAATGGAGACAGGGCTCTGCAAAAGGAATATCAGAAAGTTATTCCACCTGCTCCCCTGACCTCCGCACGTGCCCTGATGGCTTTTGTGATGCAGTTGAAAGCAAAGACGCATCAATATGTCCTCAGGATTGTACACTTGAACCCGTTATAGGTGGTCATGAGAAGGGCATCATGTCTGGCATTAGAGCTGGCCATGGAACCTGCTACTGCTACTCTGAAAAATGCTTCTGTGAGAAGGATGATATAGAGGAGGCCATGTGTGACGAGGTCTGCAAGACCATCATTGCCACTGCCGTGCTGCTCTCCTTCATCGTCTCCATTCTCCTGTCCTCCTACTTCATCCATCGTTACCACAAGAACTCCCCCAAGCCGCCCATAACCTCGGCTGAGATGACCTTCCGGCGGCCCGCACAATCCTACCCAATCAGCTACTCTGCTAACAACATGCGCCGTGGCTCGTTGGACTCCATGGAGAACCAAGTAGCCATTGACACCTTCAAAATACCTGAGGATCCCAAATGGGAATTTCCACGCAAAAACCTGGTGCTGGGCAAAACGTTAGGAGAAGGGGAGTTTGGGAAGGTTGTCAAGGCGACTGCATTCCGGCTGAAAGGAAAGGCTGGTTACACCACAGTAGCTGTGAAAATGCTTAAAGACCACGCCTCACATAGTGAACTGCGGGACCTCCTGTCAGAATTCACCTTACTGAAGCAAGTCAACCATCCACACGTCATCAAGATGTACGGAGCCTGCAGCCAGGATGGTCCAATGTATCTGATTGTAGAATATGCCAAATATGGGTCACTGCGCAACTTCCTGCGTGAGAGCCGAAAGGTGGGACCCAGCTACATGTCAGGCAACGATGCCAACCGCAACTCGAGCTACCTGGAGAATCCAGATGAGAGGGCACTCACCATGGGCGACCTGATCTCTTTCACCTGGCAGATCTCCAGGGGCATGCAGTACCTGGCTGAAATGAAGCTTGTTCACAGGGACCTCGCTGCAAGAAATGTCCTAGTTGCGGAGGGCCGTAAGATGAAGATTTCAGACTTTGGTTTGTCCCGGGACGTGTATGAGGAAGACTCATATGTGAAGAGGAGCAAGGGTCGAATCCCAGTGAAATGGATGGCAATAGAATCCTTGTTTGATCACATTTACACAACACAAAGTGACGTCTGGTCCTTTGGTGTGCTGTTGTGGGAGATTGTGACACTGGGTGGAAACCCGTACCCAGGCATCGCCCCTGAACGCCTCTTTAACCTCCTCAAGACTGGCTACAGGATGGAGAAACCAGAAAACTGTACTGAGGAAATGTATAATCTGATGCTTCGATGCTGGAAACAGGAGTCAAACAAAAGGCCCATATTCATAGACATCAGCAAAGAACTGGAGAAGATGATGGTGAAAAACCGGGATTACCTGGACCTGGCAGCGTCTACGCCAGCCGACGCCCTACTGTACGACGACGCCCTCTCCGAAGAGGACACACCCCTAGTGGACAGCAATAATGCCCCTCTCCCTCGAACCATTCCCTCCACATGGATTGAAAACAAGCTCTATGGTAGAATCTCCCATGCATTTACTCGATTTTAGTGACAGGACACATAAGCTTTTGACATGCTGTGATTGGCTTCCTGTAGTGTGTGACTGTGATCTAGGCATGCTTCATGAAAAAGTCTCCCATTTCTTAGGAAATGAGAGTCAGTGGGAAAGGAGAATCTTGTGTCTGATGATCACTATTTGGACCTGCTTCTGATGTACATTCAACCTGaccaaaatattgacacttttgTAAATAGTAAACATTTCCATAATTCCCTTATATGACATATTGTAATCCACATTCAATCCTACGTATTGATTTTATATTAGGAAACATACGTTTTGGACGGCAtaaacattttcaaaaaacatTCCAACACCCgcaattttttattaatttggaaAAAGCTGTTCAAAAACAGTTTGACATTTGAAACAGGGCCTTGCTGAATCAATCATTATCTATTACATTTGGATTCCAGACTGTCTTAAGTTATCTGAATTGTTTGTGTGTAAATAGGCTACCTATTAAGCATAATGTAAGCGTACAGTAAGTCTTTTGAAATCAACTTTTGGCTAACATTGACAAAACAATACTTTGTAAAAGTATTTTCATAAGAAATTCCCAAACAAATCCTATAGATCCTAAGCACTTCCAGTTGATAGTTCATAAAAGTATTTAGCAATAAGATGGCTGCCAGTGACTTAGTTACCATGAACAAACAGTGACTTAGTTACCATGAACAAACAGTGACTTGGTGACCATGGTGTCCTGTTACAGTGACGCAATTCTTGTATCTGCTTTATGTGGACATCAGTTATCAATGGTGCGTGAGCCAAGGATAACATTTAGAGGTCATGACATACATTACCAATAATGTAATTGTTGCTAATTGTCTTTTGAATCTTATTCAATCAATCCAGTATATTTTCTCGGTTAAACTATACAGGAACCATGGACACCATTATTGTCTGTGAAGTGATTTCTGCATAGGATTCTAAATGTATAGCCTTCTCATGGTCCTATGTCAAACAACCATCTATAATTCACTTCTGAAAAAATGCATTCTGTCCAAAATTTGAGGGAGCCTTTACTGTCTGCACTCTTTTTCTTAACTCGGTGCAGAAAAATGATATGTTCTCGTTTTTAGGCATGTCATACCCGAACTGGCCTGAGAAGAGCCCCGTACTGCTCAACAGACTTGATGCCACTAACCCAGTCTTTACAAGATATGCCAATGATAGCGTTTATGCAAACTGGATGGCTTTGCCTTCACCCGCAAAAATTGTGGAGAAGATTGATAGTTAAAAGCAAAAACCATTGTCGAAAATAAAGATTCCTAATGGGGTAGAtgtgtatatttatataaaacTGTACATATACAATCTAAAGTTGGTGCCCTTTCATTTCTGTTGCACGGGGTATTCCAAGTTAAAACTGGGGGATTTCAAAAGTGCATTTGCTGAAAAATGGCTGGAATTACATAGACCGTGTTTCAAGCAGCTCTTCGGTATGTTAATCATTACCTCAAAGTCATGTTGGCCAAGTATCATTGCATGACCGTGTACCAGGTTGTATGTCAATGTTAATGTCTTTCAAGTGCCTGTGCCGCTTCTACGATAGCCTCCAATTAGTAGTGTACGACTGTGAAGATGTTGTTTCCAGACCAGAAATTAAAGGGGACTTCTTTACCGTCACCTGTCCTATAATGGTAGACCTGTGAGGTTAAGATGGACAAAGAGTGGACACTGAGTTCATCTAGAAAAACGGCAAAGTTTCTACTTCATATGATCATGTTCTTTGAAATGTAAAAGCCACTTTTGTCTTTCCACTTTAATAGAATGTGGGCATGTTCGGTGTCAAAGCTGCAGCTCACCATTTGATTCCTCGTAATGGCAATCTTTGTGCAACAGTTAGCTAGGATTTTTGAAAACAAATGAGTGTTATCAATTGTTGTTTTATCATTACGTGATTATGTTGCAATCAATAAAAGTTCAAATATATGCGATCTATTTATA

Function

NR:

description
proto-oncogene tyrosine-protein kinase receptor Ret-like

GO: NA

KEGG:

id description
K05126 RET; proto-oncogene tyrosine-protein kinase Ret

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981852.1 False 4321 mRNA 0.49 20 61758370 61789951
XM_036981853.1 True 5454 mRNA 0.46 19 61758370 61789952

Neighbor

gene id symbol gene type direction distance location
csgalnact2 cgat2 coding downstream 2915 61746803 ~ 61755455 (-)
LOC110526339 mcmbp coding downstream 24764 61717454 ~ 61733606 (-)
tial1 tial1 coding downstream 81428 61652308 ~ 61676942 (-)
dnajc12 djc12 coding downstream 209454 61544678 ~ 61548916 (-)
LOC110526243 LOC106576835 coding downstream 214123 61541684 ~ 61544247 (-)
si:dkey-192p21.6 LOC106576822 coding upstream 7114 61797066 ~ 61840583 (-)
sgpl1 LOC106576820 coding upstream 62359 61852311 ~ 61886102 (-)
pdlim1 pdli1 coding upstream 112324 61902276 ~ 61916579 (-)
LOC110526377 LOC106576818 coding upstream 131020 61920972 ~ 62004617 (-)
LOC110526417 LOC106576819 coding upstream 191700 61981652 ~ 61983330 (-)
G68737 bag3 non-coding downstream 76263 61681214 ~ 61682107 (-)
G68741 NA non-coding downstream 78584 61678191 ~ 61679786 (-)
G68740 NA non-coding downstream 80267 61677818 ~ 61678103 (-)
G68808 NA non-coding downstream 110207 61647938 ~ 61648163 (-)
G68787 NA non-coding downstream 138320 61619498 ~ 61620050 (-)
G68869 NA non-coding upstream 3047 61792999 ~ 61793359 (-)
G68921 NA non-coding upstream 67568 61857520 ~ 61944106 (-)
G68949 NA non-coding upstream 115522 61905474 ~ 61905894 (-)
G68910 NA non-coding upstream 145561 61935513 ~ 61936398 (-)
G68736 NA other downstream 72062 61682278 ~ 61686308 (-)
LOC110526097 LOC106576849 other downstream 1297136 60430184 ~ 60495300 (-)
LOC110525695 LOC106576879 other downstream 2603225 59144373 ~ 59199471 (-)
G65147 NA other downstream 2972753 58784742 ~ 58785617 (-)
G63328 NA other downstream 4359882 57397194 ~ 57398488 (-)
G69210 NA other upstream 621570 62411522 ~ 62418296 (-)
G70013 NA other upstream 1487256 63277208 ~ 63277752 (-)
LOC110526867 LOC100136521 other upstream 2579950 64369803 ~ 64384521 (-)
tjap1 tjap1 other upstream 5028892 66806836 ~ 66883731 (-)

Expression


Co-expression Network