pdlim1 (pdli1)


Basic Information

Item Value
gene id pdlim1
gene name pdli1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61902276 ~ 61916579 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981866.1
TAGGAAATCGATCTTATCAGGGTGAAAACATCTCAAACTATTCGCTCAGCTTTGCAACAGGAACCGCCCCCTTTACTTTTAGCTACACAAAAGCCTCATCGAAGTTTGTTCACACATGTCATATTTGTCAGGGCAAAGACAGGCTGTCTAAGAAttatactttcttttttttaaactcgGATTCGGCAAATTTGGAAGTAGGCTATGCCTCTACGGGTTGTCGTGCAAGGTCCTGGACCTTGGGGATTCCGTCTAGTTGGTGGGAAGGATTTTGAACAACCCTTGACTATCTCGCGGATCACTCCTGGCAGTAAGGCTGCCCAGGCCAGTCTGAGTGTCGGGGATCAGATCCTGGCCATCGATGGAGAGCCCACTGAGAGCATGACTCACCTGCAGGCACAGAACAAGATCAAGGGCTGCTTAGAGGAAATGATCCTCTCCGTCGACAGatcAGAAACTAAAATCTGGTCACCGCTCTCTTCTGAGGATGGAAAGACCAACCCGTACAAGATGAATCTCGCATCTGAGCCGCAGGAGGTGAAACCCATAGGTTCCGCCCACAACAGGAGCGCCCTGCCATTCGCCGGGTTTGGCCCCAAGGTGGTAACCAATCAGTACAACAACCCTGCCGGTCTCTACTCCTCCGAGAACATCAAGGACTTTAACACGGCCGTGGATGACGTGAAAACCATTGCCACTGCCGCTAACGAGCCCAGCAACATCCCAACAGTGGCAGACTCTGAGGTCTACAAAATGCTGCAGGAAAACCAAGAGGCTGATGAGCCTCCTCGACAGTCCGCTTCGTTCAAGGTGCTGCAGGAGATTCTGGAGTCAGATCCTGATAAGCCCTCTGGGTTTAGGAGTGTGAAGGCCCCCGCCGCCAAAATGGTCTCAACAGTGGGAAATGCAAACAAGTTACCAATCTGTGACAAATGTGGATCAGGGATTGTAGGGATGGTTGTCAAGTTGCGGGACAAGTTTCGTCACCCCGAGTGCTACACCTGCTCCAATTGTGACGTCAACCTGAAACAGAAGGGACATTTCTTCGTGGAGGACCAGATCTACTGCGAGAAACACGCACGCGAGCGAGTGACTCCACCCGAAGGCTATGACGTGGTCACGGTCTTCCCCAAGTAGAGCTGTCTCGTTGGAACACTGCACATGACCACATTAGTGTCTCCAAGACTCCATGAGAACCATCCCCAAGACGTTCCAGCGTTTTTAAAGATGTCACATTCTAGACTGTAACATGGTATATTGTTTTATGCCTGAATCATGTTACTACCAGGCACGACATGTTACGCTTCAGTCAAGGTTTGCTGTTCGTCAGATGATAATAATTTGCACATTATGCGTATACGTTTAGGAACCGAAGAAGGCTATGAATTGTTTGCTTACATGGTGTAGTCTGGTTGAACCCAATCTCTAAGAGGAATCcaaaacatttgtatttttaatcagTAGATTAATATTTTGGGTTTCTGTTTTTACCATAAATCTTTGACAAACATGCTGTGACCACGGACAGTCAAGGGACAGGCAGTAGCTACTTTACTTGGGTATGACTTTATCACGGATAGATCCAGGCTTCTGGGTGGATGTTCATAAACAAAAACTATCCTCCAAAATGATTGCTGAGCTCCATATTTTCATTGTGAAAATGCTGTATTGGTGTTCCAAATTTACTCTTGTCAATATAATTATTATGACTTAATAAATGTTTTCTCAAACCGTG

Function

NR:

description
PDZ and LIM domain protein 1-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K23353 PDLIM1_2_3_4; PDZ and LIM domain protein 1/2/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981866.1 True 1735 mRNA 0.47 7 61902276 61916579

Neighbor

gene id symbol gene type direction distance location
sgpl1 LOC106576820 coding downstream 16174 61852311 ~ 61886102 (-)
si:dkey-192p21.6 LOC106576822 coding downstream 61693 61797066 ~ 61840583 (-)
ret LOC106576823 coding downstream 112324 61758370 ~ 61789952 (-)
csgalnact2 cgat2 coding downstream 146821 61746803 ~ 61755455 (-)
LOC110526339 mcmbp coding downstream 168670 61717454 ~ 61733606 (-)
LOC110526377 LOC106576818 coding upstream 4393 61920972 ~ 62004617 (-)
LOC110526417 LOC106576819 coding upstream 65073 61981652 ~ 61983330 (-)
LOC110526424 LOC106576817 coding upstream 89821 62006400 ~ 62027537 (-)
LOC110526449 LOC106576814 coding upstream 393904 62310483 ~ 62315483 (-)
LOC110526460 eif3a coding upstream 406854 62323433 ~ 62351491 (-)
G68869 NA non-coding downstream 108917 61792999 ~ 61793359 (-)
G68737 bag3 non-coding downstream 220169 61681214 ~ 61682107 (-)
G68741 NA non-coding downstream 222490 61678191 ~ 61679786 (-)
G68740 NA non-coding downstream 224173 61677818 ~ 61678103 (-)
G68808 NA non-coding downstream 254113 61647938 ~ 61648163 (-)
G68910 NA non-coding upstream 18934 61935513 ~ 61936398 (-)
G68962 NA non-coding upstream 54940 61971519 ~ 61971917 (-)
G68965 NA non-coding upstream 64030 61980609 ~ 61980913 (-)
G68974 NA non-coding upstream 84326 62000905 ~ 62043540 (-)
G68736 NA other downstream 215968 61682278 ~ 61686308 (-)
LOC110526097 LOC106576849 other downstream 1441042 60430184 ~ 60495300 (-)
LOC110525695 LOC106576879 other downstream 2747131 59144373 ~ 59199471 (-)
G65147 NA other downstream 3116659 58784742 ~ 58785617 (-)
G63328 NA other downstream 4503788 57397194 ~ 57398488 (-)
G69210 NA other upstream 494943 62411522 ~ 62418296 (-)
G70013 NA other upstream 1360629 63277208 ~ 63277752 (-)
LOC110526867 LOC100136521 other upstream 2453323 64369803 ~ 64384521 (-)
tjap1 tjap1 other upstream 4902265 66806836 ~ 66883731 (-)

Expression


Co-expression Network