LOC110526417 (LOC106576819)


Basic Information

Item Value
gene id LOC110526417
gene name LOC106576819
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 61981652 ~ 61983330 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607386.2
tgcctatgattttggaatgagatgttcgacgagcatggTAGCTAAGGAATTATTAGCAACGTTACCTGCTTAGCTATGTTATTCTAAATCTCTTAAAAAGCACTTGAACGCAATCATGTTGTATAAACGACTTCACCAACTGGGAAATACGAGATTCCAAAGAGCATTTGAAGGCAGCATATGACTGCCATTGATGACATATATTTAATGGTATACTGTACCATGATATTGTAGTGGCAACCTTGTGTTGTGTAATTGTAAATTGGAGCTCGAGTTTTGTTAATGTCCTGTATTGAAGAGAGAGCTTGTTCTAtttctgcaattttataacacacacacacgtacacacacgtgaGATGTATGCAGACTCCACCCCTGTATTATCTGTCAACCAGGAAGTAGTAGAGTTCACAACGGAACCACACTGTAGCATGTAGCTATTCAGTAATGCTCACAACATTCGGTCTAAATTATTTATTTGCCTTATCTGTGGACTTATAATTGTTGGAAATAATCAACATTCAAATAACCATTGAATATGGTTGAAGAAACAGCATAATCTACTATACATTGTGATTTCCAAGTTTGACAGACCTCACTGCTGTAAGTTTTCAAAAGTGAAAGTAAACCTCAATTCCAGAAGCCATCACAGAAGAGAGACGGTGGTGGTGAGAAAATGGAATCTAAACCTTCCCTCCCAGAGGAGGATCTCTGCTGTACTGTATGCTGTGACATCTTCAGGGATCCCGTTTTCCTGTCATGTACCCACAGCGTCTGCAAAGCCTGTCTGAAGGAATTCTGGAAACAGAAGGGATCTCGAGAATGTCCAATGTGCCGGAAAAGATTGTCAATGGATAACCCCCCATGTAACCTAGCTTTAAAGAACCTGTGTGATGCCTACTTACAGGAGAAAGGTCAGAGATATTCAGCAGGGCCAGATGTGCATTGCAGTCTGCACAGTGAGAAACTCAAACTGTTCTGTCTGGATGATAAGCAGTCAATTTGTGTAGTGTGCCGGGATTCAAAGAACCATAAAAAGCATGACTGCATCCCCATAGATGAAGCTGCACTGGATCATAAGGAGGAAGTTAAGATGGCACTGAAGCCCCTAAAGGATATGCTGGAGGTCTTAAATGAAGTTAAACTGACCTGTGATCAAACAGCAGAGCACATTAAGACACAGGCCCAGCACACAGAGAAGCAGATTAAGGAGGAGTTTGGGAAGCTTCACCAGTTTCTACAGGATGAAGAGGAAGCCAGGATTGCTGCACTGAGGAAGGAAGAGAAGCAAAAGAGTCAGACGATGACAAAAAAGATTGAAGAGATGAGCAGGGAGATATCATCACTTTCGGACACAATCAGAGCCATAGAGAAAGAGCTGGGAGCCGACGATATCTCGTTCCTGCAGAATTTCAAGGCCACAGTCAAAAAAGCAAAGTGCACCCTGTCAAATCCGGAGAAGATTTCAGGATCACTGATCCACGTGGCAAAGTACCTAGGCAACCTGCAGTTCAGAGTCTGGGAGAAGATGCAGGAAATAGTTCCATCCGCATCTCATCCTGTCCGAGGATCTGATGAGTGTGACATACACCAAAGACgctgtcacatatcagtttgcaaacaatgtaaaaaataaataaaataataattgctttcttgagtaaggcaactCCAAAaca
>TU76326
CAGATGTGCATTGCAGTCTGCACAGTGAGAAACTCAAACTGTTCTGTCTGGATGATAAGCAGTCAATTTGTGTAGTGTGCCGGGATTCAAAGAACCATAAAAAGCATGACTGCATCCCCATAGATGAAGCTGCACTGGATCATAAGGAGGAAGTTAAGATGGCACTGAAGCCCCTAAAGGATATGCTGGAGGTCTTAAATGAAGTTAAACTGACCTGTGATCAAACAGCAGAGCACATTAAGACACAGGCCCAGCACACAGAGAAGCAGATTAAGGAGGAGTTTGGGAAGCTTCACCAGTTTCTACAGGATGAAGAGGAAGCCAGGATTGCTGCACTGAGGAAGGAAGAGAAGCAAAAGAGTCAGACGATGACAAAAAAGATTGAAGAGATGAGCAGGGAGATATCATCACTTTCGGACACAATCAGAGCCATAGAGAAAGAGCTGGGAGCCGACGATATCTCGTTCCTGCAGAATTTCAAGGCCACAGTCAAAAAAGCAAAGTGCACCCTGTCAAATCCGGAGAAGATTTCAGGATCACTGATCCACGTGGCAAAGTACCTAGGCAACCTGCAGTTCAGAGTCTGGGAGAAGATGCAGGAAATAGTTCCATCCGCATCTCATCCTGTCCGAGGATCTGATGAGTGTGACATACACCAAAGACgc

Function

NR:

description
zinc-binding protein A33-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607386.2 False 1679 mRNA 0.42 1 61981652 61983330
TU76326 True 665 TUCP 0.56 1 61981731 61982395

Neighbor

gene id symbol gene type direction distance location
pdlim1 pdli1 coding downstream 65073 61902276 ~ 61916579 (-)
sgpl1 LOC106576820 coding downstream 95550 61852311 ~ 61886102 (-)
si:dkey-192p21.6 LOC106576822 coding downstream 141069 61797066 ~ 61840583 (-)
ret LOC106576823 coding downstream 191700 61758370 ~ 61789952 (-)
csgalnact2 cgat2 coding downstream 226197 61746803 ~ 61755455 (-)
LOC110526424 LOC106576817 coding upstream 23070 62006400 ~ 62027537 (-)
LOC110526449 LOC106576814 coding upstream 327153 62310483 ~ 62315483 (-)
LOC110526460 eif3a coding upstream 340103 62323433 ~ 62351491 (-)
LOC110526498 NA coding upstream 383909 62367239 ~ 62375476 (-)
LOC110526503 LOC106576812 coding upstream 406963 62390293 ~ 62403103 (-)
G68965 NA non-coding downstream 739 61980609 ~ 61980913 (-)
G68962 NA non-coding downstream 9735 61971519 ~ 61971917 (-)
LOC110526377 LOC106576818 non-coding downstream 16436 61920972 ~ 62004617 (-)
G68921 NA non-coding downstream 37546 61857520 ~ 61944106 (-)
G68910 NA non-coding downstream 45254 61935513 ~ 61936398 (-)
G68974 NA non-coding upstream 17575 62000905 ~ 62043540 (-)
G69071 NA non-coding upstream 187620 62170950 ~ 62173859 (-)
G69149 NA non-coding upstream 421223 62404553 ~ 62405932 (-)
LOC110526526 LOC106576810 non-coding upstream 438580 62421910 ~ 62436080 (-)
G68736 NA other downstream 295344 61682278 ~ 61686308 (-)
LOC110526097 LOC106576849 other downstream 1520418 60430184 ~ 60495300 (-)
LOC110525695 LOC106576879 other downstream 2826507 59144373 ~ 59199471 (-)
G65147 NA other downstream 3196035 58784742 ~ 58785617 (-)
G63328 NA other downstream 4583164 57397194 ~ 57398488 (-)
G69210 NA other upstream 428192 62411522 ~ 62418296 (-)
G70013 NA other upstream 1293878 63277208 ~ 63277752 (-)
LOC110526867 LOC100136521 other upstream 2386572 64369803 ~ 64384521 (-)
tjap1 tjap1 other upstream 4835514 66806836 ~ 66883731 (-)
LOC110527436 ppp2r5d other upstream 5011352 66965664 ~ 67010646 (-)

Expression


Co-expression Network