LOC110526440 (LOC106576815)


Basic Information

Item Value
gene id LOC110526440
gene name LOC106576815
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 62153349 ~ 62168687 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607433.2
CTTTCACCGGTGATTGTGGCGGATGTAGTAGACCAACCAGGAAGTTAGCTAGTTTGGGCTGGTACagctagatagctagcaggcTGTAAAATAACGAAATTAAGCTCCAATAAATCATTTTCCAATTGGTTATTTGTGAAATATGTCCAACAACAATCGAGTGGATTTACAGGATGGCAACATGTCACAAGTTTTGAGAAAATGACGAGATGACTTGCCTTACAGTGGCCTGGACATTTGTGATATGTTAACGTTAATCACAAAAGACAAGTGTGTAAGATGGACTGAAGGAATTAGTTAGCTGCAGACTTTTGAGATGTTACTAgctgtacatgtaaatatatgacCAAAAAGCACTGTGTTATctacatctacatatcactagtCAACATGGCCCTACAAATAAGTTGTTAATATTTGCATGCTCTGTCATCACTTTTTAAGGTCAATTCACCTGCACATACATTTGAATGACTAACCACACATAAACAGAGCTGATCATGTCACTAGCAAAGCAGGCACAAACGTGGTTCCCAACTCATGTCCAAGCCACTGTTCTCCAAGCAACTGACCTACAAGCTAAGGGTAAGCATGGCAACAACGACGCCTACGCTATCATCCAGCTGGGCAAAGAGAAGTACTCAACATCTGTGGCAGAGAAAACACTCAACCCAGTGTGGAGAGAAGAAGCCGCCTTTGAACTGCCTGGTCTGCTTCTGGAGGGCAATCCAGAAATCTATGAATTATGCCTTATCGTGATGCACAGGTCCCTGGTGGGGATGGATAAATTCCTGGGCCAGAGTACCATCAATCTCAATGATATTTTTGATAACAAGGAGCGAAGGAAAACAGACTGGTACTCCTTGGACTCCAGGCCAGggaagaagaggaaagagagagggaagatccAGGTCAGCATTCAGTTCATGAGGAACAACATGACGGCCAGCATGTTTGACCTCTCCATAAAGGACAAGCCCCGCTCGCCCTTCACCAAACTCAAGGACAAGATGAAGGGGCGCAAGCACGACGGTGGTCTCTCCGACACCACCTCAGCCATCCTGCCCCGCTCCGCCATGTGTGACTCGGAGACCCTTCGCCAACCCAGTGCTTCTGACCATCAGCCAGAGCCCAAGATCAAGAGACACCTACTGGCCGGCTCCCATACGCTCTCTGCAGCCCGCTCCATGTCTGACCTCATTGGCACTCACTTCCGCCCCAAGCTGGACTCTAGAAACTCCATGGAACAGCTGGagaaagagagtggtgcCGCCCCTCACAGGCGCTCCCAGGGCGAGGTGCCAGGCTACCAGGACAGCGAGGGGCAAGGTGATCCTTTTACTCATATCAGCGACGGCTTGCCGCAGAAGTACGCCACCCTCCCACGCAACCGCAACCCGTTCGAGGGGGAGCAGGGCCAGCTGTGGGACCGAggggagaaaaaggagaagaaggagaaggtcAGCCTGCTGGAACGTGTGACCGGGAAGAAGGAGGGACGCAAGACCAACAACGGGGGGCGTTCGGGCAGCTCTGGAGACCTGCGCTCCAGCAACCCATTCAGCAGCGACTCTCAGGGAAACACCCAACCaaccaaccccttcctctctcacAAAAATACAAGCGATAAAAATCCCACCACTAATGGAGACATCCGAAAGGCAAGAGAGAACCACGGAAAGAAAAATGAGACGATGCAGACGAGCGCGGCTTCCTATAGCAACTTATCTTTCGACGAGGTGGTGCATGAGCTCATCAAGCAGAATGGGGTGGTGAAAAAGAAGGACGCCCATATCCGTGAACTGGAAGACTACATTGATAACCTGCTGGTGCGCGTTATGGAGGAGACGCCGAGCATCCTACGGACACCCTACGAGCCCAAGAGGAAAGCGGGGAAAATCTCTAAAAATAACTAGTGTCAAGGTAGAGTTAGGGGTCCCAACGATATGCTCTTGTTTCACTGAGGGCCCATTCTAGCCATTGTGAAATGTATTGTGGGTATAGAACAAAAATGAAGAGAAGGGGATTGACCTATGCcaaatcaccattttattttttgaatttttattTGAATAGGTTTTGCATGCTTTGATTTGAGTGTACACCAGTTTCCCCAACAATTTTATTGGGGAGTGAAGTACACCCGACTACATAAATATCTGACATTTTGACTTGCATTTTAACAAACCCCATGGCTTTCCCATAATTATAGAAATACTAACCTGTGAATCAGTTGTTGTATAGTGATCAACTCATCCTTTTTTTGTTATTATACCTCTTGCTCTGTTCTTTGCATGACATTTCCTTTGTTTTCCATATTCAGCCGAATTgaaagaatgtgaaatggcaaTGTCTCACAGATCCATCAGGACACCTTATAGCAGAGACCAGTGGGATAAGAAACAAAACTAGTGGGTTTATGCCATGCGCGACAGTTTCTTCAAGGTGTACACGTTTTCACAATAGTGTATACAATAGACCTGTGCACTTTCACACGCGTATAACATGGGGGGAAAAACACAGACAGCTTCTGAGGCGATTGAGTGCACATGGAACCACCATCAAGCTAGATTTGCGTTTTAACACTAAGGCCATACAAATGTAATTAAATGTTTAACGGATGGCCCACTtcactttaaaaaatgtttttaagagATTAAGTCCTACTGAAAAAAATGCATGTTTTGATCAAAATAATGTCCCCCCCTAAAATCACTAAAATAACTTAAAATCACTTGATTAGGTCACTAGGTGTTGAACTAAGGTTGCTGAAGTATTTTCAAAGGATTATCtagtacttttgtatactttttagatAGTCATTCTAAAAGTAGCACTCacaagccaaaagtggtccccgaaaATGGCCTATGTCTCTCGCTCTGCTGTGGGTGCATcatgtgcatcttgctagctgtcattCATATGGCGAGGTGCTAAAGTTAACTTGTTGAACTCGTGCTGCTAGGGGGCTAGCCCATGTGGGGGGAAATGGTGTAGCACAGTACAAAGAAAAACTAGGGATTTCATGGCTAATTGAAgtaagacagtaattctgcttATAGATTATGCATTTATAAACTACTCATTGACATATCCAGCCCAAAGtgggaggtttaaaaaaataccggagcatgtctttaataaAAGGGGCTACTCGCctcacttaaaaaaaaacatatatatatatatatatatatatatctgttaaATGTTTAATAAAATATGTATGGCCTAAGTCTTAAAATGTACCAAACACCGCGTGTTAACTTATCACACTTGtgtaaaaagaagaaaaaaaagaagaaaagtaCATAGTTTATTGAATAGGGTTTGATGTGCTAATTTGAATAGAGCTGTAATGACTGTTTACACTTCAGACCAAGATGCAGGATTATGACACAAACTCTCACTCAGCCAATCGGCCCTTTACACGCCTCTTACTGTAGGCAAGGATTGTGTTGATATACTGGAGGTGTGAATACAATGTTATCCGCCTGTCTGTGACATTGATCTGAGCCTTTTGGCATTAGGATGGTTTGGACCTCTCTCTTGACATTTGCCATCTTTGTACAAAATGTTATTATTTAAAGTTAGTCTTATGAGGGTAGGTACTAAGCACTACTGAATTCTTACTCAAGACATTGCATATCCAAACACAGATCTGAAAACAATGTGACACTGCATTCGAACTTTGTGACCTTCCagtgaaaacaaaacaaaaaataggTGAACACTGTATTTTCTCTGGTCAATTTGTTGATATAGAATGTCTCGGCATCGTGCTGGTGCAGAATGTAATTGAGTGGAGGCAAACTAAAGACACTGCTATTGAAGCCTCCTCCAGTGTTTACACCAAAGTGAATTCATTCAACGAGCTGCCATTGTCCATCATATCAACTCCAAAGTCATTGCTTTTGGGTTTGttatttcagtttatttatttttttatcataagctaggtttccatccaattagcGACAGATTTTCATTTGAATATTCAAAAAATTTGCATAAAGACAATATACATGTTtttccaccagagatgtttccatcaaatggacttgttgcggataaaaggcTCTGCGTGATGACGCAATGCACATAAAAACACATTTggcggttaaattcccatgtaccgaatacaattaaatgggtttccatcgcattttcaactctactgatggttttctctcagaaaaaaattgtgtgTTTTATACACCgagtgtgcccactctggttttgcaacatgcgctctagccaacagctcacagatccAGTGTGGGTACAGCCtacatcagggatgggcaactttgactGCGATCAAAACATTTGTGGCTCCCCTCTTGACAGCGGAGATAAATTTGTgcgattctacacattttgccatgaggtgtagagaaaatgttgcagtttaaaagcaagtttgctgcaattctacacattttgccatggggcggagagaaatgtttgccgtttttaatatgatatgagTGAGACTAATGAAATCATTGGTGactaatctgtagcctaataaactgcttGCTTTCCCGacgagtcatagtgggaggaccacacgtGCCATCGCGTGACTCCCAAGTTTACCTCAgtgtgatggttattatatcagtgTTTGCGCATAAAAGAGTTTCCTCCGatatttctcgcataattaatttcacagacaaaaagatcccaccttgtctagcgtattttgttttgtcgacatttggaaagtttaccgacaaatgttctgtttccatcaAGCCTGTTACTCGCAtcaaaaggttggatggaaacctggttactgaCCCGTGATGACTGTATTTGTCTTTAGGACCAAGCGCATTGTATGACCTTTATTTACAGTCAATGTAGGCCCATACATTGTCATTCAAAAATAAGTATAAACCATTGGTCAAGTAGTTCTAGCTTTACTTTACTGGTACTGGTAAGTGCAATAAATATAATTTATCAACATGTTTAATATTCAA

Function

NR:

description
rab11 family-interacting protein 2-like

GO: NA

KEGG:

id description
K12484 RAB11FIP1_2_5; Rab11 family-interacting protein 1/2/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607433.2 True 4994 mRNA 0.43 6 62153349 62168687

Neighbor

gene id symbol gene type direction distance location
fam204a LOC106576816 coding upstream 55844 62064250 ~ 62097505 (+)
sec23ip LOC106576824 coding upstream 408192 61733628 ~ 61745157 (+)
inpp5f LOC106576825 coding upstream 443280 61687566 ~ 61710069 (+)
bag3 bag3 coding upstream 469181 61677780 ~ 61684168 (+)
pkd2l1 pkd2l1 coding upstream 507168 61635163 ~ 61646181 (+)
LOC110526492 LOC106576813 coding downstream 192302 62360989 ~ 62366199 (+)
LOC110526511 LOC100194723 coding downstream 215003 62383690 ~ 62390008 (+)
LOC110526533 LOC106576809 coding downstream 266595 62435282 ~ 62492911 (+)
LOC118965226 cdc26 coding downstream 272077 62440764 ~ 62441131 (+)
LOC110526548 LOC106576808 coding downstream 336484 62505171 ~ 62526302 (+)
G68132 LOC106576819 non-coding upstream 170428 61981733 ~ 61982921 (+)
G68130 NA non-coding upstream 175286 61977849 ~ 61978063 (+)
G68127 NA non-coding upstream 177252 61975881 ~ 61976097 (+)
G68119 NA non-coding upstream 188171 61964814 ~ 61965178 (+)
G68118 NA non-coding upstream 188597 61964237 ~ 61964752 (+)
G68384 NA non-coding downstream 245993 62414680 ~ 62416124 (+)
G68469 NA non-coding downstream 363482 62532169 ~ 62532538 (+)
G68472 NA non-coding downstream 366921 62535608 ~ 62535941 (+)
G68479 NA non-coding downstream 371428 62540115 ~ 62540433 (+)
G68498 NA non-coding downstream 399666 62568353 ~ 62568619 (+)
G67930 mcmbp other upstream 419961 61729765 ~ 61733388 (+)
G67806 LOC106581772 other upstream 838097 61314874 ~ 61315252 (+)
G66188 NA other upstream 2211285 59941486 ~ 59942064 (+)
G65442 NA other upstream 2828220 59324636 ~ 59325129 (+)
G64338 NA other upstream 3452970 58699296 ~ 58700379 (+)
G70011 NA other downstream 1106276 63274963 ~ 63275296 (+)
LOC110526969 stk32c other downstream 2640902 64809255 ~ 64946164 (+)
LOC110527164 LOC106576754 other downstream 3747048 65915581 ~ 65922285 (+)
G73515 NA other downstream 4118992 66287679 ~ 66288469 (+)
LOC118965274 LOC106576739 other downstream 4251808 66417495 ~ 66424081 (+)

Expression


Co-expression Network