Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110526460 |
| gene name | eif3a |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048565.1 |
| NCBI id | CM023219.2 |
| chromosome length | 95772356 |
| location | 62323433 ~ 62351491 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| eif3a | Enables RNA binding activity. Contributes to translation initiation factor activity. Involved in IRES-dependent viral translational initiation; formation of cytoplasmic translation initiation complex; and viral translational termination-reinitiation. Located in cytosol; nucleolus; and nucleoplasm. Part of eukaryotic translation initiation factor 3 complex. |
| description |
|---|
| eukaryotic translation initiation factor 3 subunit A-like isoform X6 |
| id | name | namespace |
|---|---|---|
| GO:0001731 | formation of translation preinitiation complex | biological_process |
| GO:0006446 | regulation of translational initiation | biological_process |
| GO:0005852 | eukaryotic translation initiation factor 3 complex | cellular_component |
| GO:0033290 | eukaryotic 48S preinitiation complex | cellular_component |
| GO:0016282 | eukaryotic 43S preinitiation complex | cellular_component |
| GO:0003743 | translation initiation factor activity | molecular_function |
| id | description |
|---|---|
| K03254 | EIF3A; translation initiation factor 3 subunit A |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021607452.2 | False | 5780 | mRNA | 0.52 | 23 | 62323433 | 62351491 |
| XM_021607460.2 | False | 5768 | mRNA | 0.52 | 23 | 62323433 | 62351491 |
| XM_021607469.2 | False | 5762 | mRNA | 0.52 | 22 | 62323433 | 62351491 |
| XM_021607475.2 | False | 5759 | mRNA | 0.52 | 23 | 62323433 | 62351491 |
| XM_021607484.2 | False | 5747 | mRNA | 0.52 | 23 | 62323433 | 62351491 |
| XM_021607493.2 | True | 5741 | mRNA | 0.52 | 22 | 62323433 | 62351491 |
62,308,000
62,312,000
62,316,000
62,320,000
62,324,000
62,328,000
62,332,000
62,336,000
62,340,000
62,344,000
62,348,000
62,352,000
62,356,000
62,360,000
62,364,000
62,368,000
NC_048565.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110526449 | LOC106576814 | coding | downstream | 7950 | 62310483 ~ 62315483 (-) |
| LOC110526424 | LOC106576817 | coding | downstream | 295896 | 62006400 ~ 62027537 (-) |
| LOC110526377 | LOC106576818 | coding | downstream | 318816 | 61920972 ~ 62004617 (-) |
| LOC110526417 | LOC106576819 | coding | downstream | 340103 | 61981652 ~ 61983330 (-) |
| pdlim1 | pdli1 | coding | downstream | 406854 | 61902276 ~ 61916579 (-) |
| LOC110526498 | NA | coding | upstream | 15748 | 62367239 ~ 62375476 (-) |
| LOC110526503 | LOC106576812 | coding | upstream | 38802 | 62390293 ~ 62403103 (-) |
| LOC110526516 | LOC106576811 | coding | upstream | 55017 | 62406508 ~ 62421062 (-) |
| LOC110526526 | LOC106576810 | coding | upstream | 76355 | 62421910 ~ 62436080 (-) |
| LOC110526585 | fignl1 | coding | upstream | 261445 | 62612936 ~ 62617259 (-) |
| G69071 | NA | non-coding | downstream | 149574 | 62170950 ~ 62173859 (-) |
| G68974 | NA | non-coding | downstream | 279893 | 62000905 ~ 62043540 (-) |
| G68965 | NA | non-coding | downstream | 342520 | 61980609 ~ 61980913 (-) |
| G68962 | NA | non-coding | downstream | 351516 | 61971519 ~ 61971917 (-) |
| G69149 | NA | non-coding | upstream | 53062 | 62404553 ~ 62405932 (-) |
| G69215 | NA | non-coding | upstream | 84695 | 62436186 ~ 62436564 (-) |
| G69252 | LOC106604744 | non-coding | upstream | 133552 | 62485043 ~ 62485703 (-) |
| G68736 | NA | other | downstream | 637125 | 61682278 ~ 61686308 (-) |
| LOC110526097 | LOC106576849 | other | downstream | 1862199 | 60430184 ~ 60495300 (-) |
| LOC110525695 | LOC106576879 | other | downstream | 3168288 | 59144373 ~ 59199471 (-) |
| G65147 | NA | other | downstream | 3537816 | 58784742 ~ 58785617 (-) |
| G69210 | NA | other | upstream | 60031 | 62411522 ~ 62418296 (-) |
| G70013 | NA | other | upstream | 925717 | 63277208 ~ 63277752 (-) |
| LOC110526867 | LOC100136521 | other | upstream | 2018411 | 64369803 ~ 64384521 (-) |
| tjap1 | tjap1 | other | upstream | 4467353 | 66806836 ~ 66883731 (-) |
| LOC110527436 | ppp2r5d | other | upstream | 4643191 | 66965664 ~ 67010646 (-) |
