LOC110526548 (LOC106576808)


Basic Information

Item Value
gene id LOC110526548
gene name LOC106576808
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 62505171 ~ 62526302 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607603.2
CGCATTGGCGTCACACTCGTCTCACAGTGTATCGAACGAACGACAGAACAGTTGTTATACTGCACGTAGAATGGAAGACCGTAAGTTGTGCAAGACACGTCTAGACAATCAAGCATCCTTATTGGGAACTACGCTACTAGATCAGTGTTTGCAATAGTGTTTGTATTATTGGTTTGTTGTAGGCTATATACGACCGTTTATCTGTCTCGATAGTGATATGTTGTTACCGTGGGCAGTTTATAGCCTGTAATAAGAAAGCTTCGACTTCTTCCTCAACCCAACCGTCAGCCAACGGATAAAGGACACATGCAGAAGCTTACAGATGGACTGGCTCACACCGGAGATGTGAAGTGTGTTATGTGAAGCCAAGGTGTCATCCCACCTTATAGGTGGTGGGGAGAGATGCTGCACTCTGTTGCCATGACAGCGGAAGTCCTGTTTGTTATGTGGTTTCTCATGACCAGTAGTCAGTGTAATCCCGTGGCAGACTTGTTGGTGAGCCGGGAACGCTTTGAGCGTGTCCTGACCCAGGCCAGAGAGGACAAGTATGACAAGCAGCAGGCCTCGGAGGGGGCGCTCAGTTACAGCACCCAACAACAGCTGAAGGAGATCAGCTTCATGGGCCTGGAGGCCAACAGAGGGGTCAGCAATAGAACTTCTGTCAACAGATCCAGGACGAACTCCAGCTCCCAGAAACGTGGTGGATCCAAGGGTGGGAAGGCATCACAGGAGTTGTGGGAAGAGCAAGAGGGGGGCCTGAGTCGAGTAGACGAGGGCCCTACAAGTGAAACAAACCTCTCTCTCGACGCTATCGACGAGTACGCATATCCAGATTACAGGGGGAAGGGCTGCATTGATGAGAGTGGCTTTGTGTTTGCCATCGGGGAGAAATTTACTCCGGGGCCCTCCACGTGCCCTTGCCTCTGCACCGACGAGGGACCCCTGTGTGCCAAGCCTGAATGTCCCAAAGTTCACCCTCGCTGCATCCGGGTGGACACCAGCCAGTGCTGTCCAGAGTGCAAGGAGAAGAAGAACTACTGTGAGTTCAGGGGGAAAGTCTACGCAACGCTACAAGAGTTTAAGgtGTCTCCGTGTGAGACGTGTCGCTgtgaggggagtggagaggtGTTGTGCTCTGTGTCAGCATGCCCTCAAACAGAGTGTGTCGATCCAGAGTATGAGCCTGATCAGTGCTGCCCCATCTGTAAGACCGGGCCAAACTGTTATGCAGACACACAAGTGATCCCAGCTGGGCGCGAGGTGAAGATTGATGAGTGTACAATCTGCTACTGCACGTATGAAGTGGGCACGTGGCAGATCGAACATCAGGCTACCTGCAGCAAGAATGATTGCCAGGTGAGCTAGAGACTGGCCCTGACAGTGGGTATGGGGGCAGGGGCTATGGATCCATAGGTGCCCTCGCCGTGTCCATGTCAGCCAGCACGCAACTCAACGCTAGCCTGATTAAACCAGACTGAACGCTGGTGAGCGCAAAAAATGTTGAATGCAGCATTCAGTCTAGTTTAACCTGGCTAACTCAATGCAGCCTTCACCCAGTCTATACCAGACATCAAGGTCACCCCCAGACCGTATGATTTCTGCATTTACAATCACAAGTATTATTAAATCAAGCTTTATATGAAGAGTTTGAATCCATATACAGAATATCTATTTATCTATGTACTGAATTATTTATGGAGAAAAACTatccaaaacatatttttttatagcCACTGCATTTTATTAAACTGCAATGAATTGGGTTAGAGGTCAAATAAACATCATGGAATGTATAGAATCCTTACTGTCTGTGTTTCATAGAGGTAGAAACCATAGCCTACTGACAGGTGGTGTCATTCTTATACGATGCACCACCTGAAGTAAAACAATGGGTAAAACTTGTAAGGTTTCAATATGAAAATTGTATGTAATTTTGAAAATAACTTAGTGAAGAAATGTAAGAAATTACATGACTGTTTTGTGATTTACTTATATGTATTTTGCAATTTCAATGTGTTTTGATTTCATGCGCTTTTTGTAAGCAGTTCTCTTTGTATTATGTATTCACGTTTAAAATAAACAGCAACCTGTG

Function

NR:

description
brorin-like

GO:

id name namespace
GO:0007399 nervous system development biological_process

KEGG:

id description
K24521 VWC2; brorin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607603.2 True 2092 mRNA 0.47 4 62505171 62526302

Neighbor

gene id symbol gene type direction distance location
LOC110526533 LOC106576809 coding upstream 12260 62435282 ~ 62492911 (+)
LOC118965226 cdc26 coding upstream 64040 62440764 ~ 62441131 (+)
LOC110526511 LOC100194723 coding upstream 115163 62383690 ~ 62390008 (+)
LOC110526492 LOC106576813 coding upstream 138972 62360989 ~ 62366199 (+)
LOC110526440 LOC106576815 coding upstream 336484 62153349 ~ 62168687 (+)
LOC110526555 LOC106576807 coding downstream 59562 62585864 ~ 62608428 (+)
LOC110526580 LOC106576805 coding downstream 95658 62621960 ~ 62630539 (+)
polr1b polr1b coding downstream 105252 62631554 ~ 62651962 (+)
cyp1b1 cyp1b1 coding downstream 209469 62735771 ~ 62739992 (+)
LOC110526628 LOC106576800 coding downstream 337899 62864201 ~ 62874655 (+)
G68384 NA non-coding upstream 89047 62414680 ~ 62416124 (+)
G68132 LOC106576819 non-coding upstream 522250 61981733 ~ 61982921 (+)
G68130 NA non-coding upstream 527108 61977849 ~ 61978063 (+)
G68127 NA non-coding upstream 529074 61975881 ~ 61976097 (+)
G68119 NA non-coding upstream 539993 61964814 ~ 61965178 (+)
G68469 NA non-coding downstream 5867 62532169 ~ 62532538 (+)
G68472 NA non-coding downstream 9306 62535608 ~ 62535941 (+)
G68479 NA non-coding downstream 13813 62540115 ~ 62540433 (+)
G68498 NA non-coding downstream 42051 62568353 ~ 62568619 (+)
G68477 NA non-coding downstream 83447 62609749 ~ 62610025 (+)
G67930 mcmbp other upstream 771783 61729765 ~ 61733388 (+)
G67806 LOC106581772 other upstream 1189919 61314874 ~ 61315252 (+)
G66188 NA other upstream 2563107 59941486 ~ 59942064 (+)
G65442 NA other upstream 3180042 59324636 ~ 59325129 (+)
G64338 NA other upstream 3804792 58699296 ~ 58700379 (+)
G70011 NA other downstream 748661 63274963 ~ 63275296 (+)
LOC110526969 stk32c other downstream 2283287 64809255 ~ 64946164 (+)
LOC110527164 LOC106576754 other downstream 3389433 65915581 ~ 65922285 (+)
G73515 NA other downstream 3761377 66287679 ~ 66288469 (+)
LOC118965274 LOC106576739 other downstream 3894193 66417495 ~ 66424081 (+)

Expression


Co-expression Network