Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110526585 |
| gene name | fignl1 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048565.1 |
| NCBI id | CM023219.2 |
| chromosome length | 95772356 |
| location | 62612936 ~ 62617259 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| fignl1 | Enables protein-macromolecule adaptor activity. Acts upstream of or within microtubule cytoskeleton organization. Predicted to be active in nucleus. Is expressed in head; nervous system; neural tube; tail bud; and vertical myoseptum. Orthologous to human FIGNL1 (fidgetin like 1). |
| description |
|---|
| unnamed protein product |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| LOC110526585 | True | 3542 | mRNA | 0.47 | 3 | 62612936 | 62617259 |
62,606,000
62,607,000
62,608,000
62,609,000
62,610,000
62,611,000
62,612,000
62,613,000
62,614,000
62,615,000
62,616,000
62,617,000
62,618,000
62,619,000
NC_048565.1
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| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110526526 | LOC106576810 | coding | downstream | 176856 | 62421910 ~ 62436080 (-) |
| LOC110526516 | LOC106576811 | coding | downstream | 191874 | 62406508 ~ 62421062 (-) |
| LOC110526503 | LOC106576812 | coding | downstream | 209833 | 62390293 ~ 62403103 (-) |
| LOC110526498 | NA | coding | downstream | 237460 | 62367239 ~ 62375476 (-) |
| LOC110526460 | eif3a | coding | downstream | 261445 | 62323433 ~ 62351491 (-) |
| LOC110526600 | NA | coding | upstream | 47838 | 62665097 ~ 62667128 (-) |
| LOC110526605 | LOC106576802 | coding | upstream | 134104 | 62751363 ~ 62823068 (-) |
| LOC110532536 | LOC106576798 | coding | upstream | 336968 | 62954227 ~ 62974864 (-) |
| march5b | march5b | coding | upstream | 414335 | 63031594 ~ 63075340 (-) |
| LOC110526655 | LOC106576794 | coding | upstream | 531385 | 63148644 ~ 63223684 (-) |
| G69274 | NA | non-coding | downstream | 2909 | 62609471 ~ 62610027 (-) |
| G69330 | NA | non-coding | downstream | 31465 | 62581270 ~ 62581471 (-) |
| G69318 | NA | non-coding | downstream | 41733 | 62570877 ~ 62571203 (-) |
| G69252 | LOC106604744 | non-coding | downstream | 127233 | 62485043 ~ 62485703 (-) |
| G69215 | NA | non-coding | downstream | 176372 | 62436186 ~ 62436564 (-) |
| G69339 | NA | non-coding | upstream | 3940 | 62621199 ~ 62621502 (-) |
| G69296 | LOC106576805 | non-coding | upstream | 7164 | 62624423 ~ 62624680 (-) |
| G69344 | polr1b | non-coding | upstream | 18569 | 62635828 ~ 62637806 (-) |
| G69359 | NA | non-coding | upstream | 39054 | 62656313 ~ 62658767 (-) |
| G69557 | NA | non-coding | upstream | 131678 | 62748937 ~ 62749699 (-) |
| G69210 | NA | other | downstream | 194640 | 62411522 ~ 62418296 (-) |
| LOC110526417 | LOC106576819 | other | downstream | 630541 | 61981652 ~ 61983330 (-) |
| G68736 | NA | other | downstream | 926628 | 61682278 ~ 61686308 (-) |
| LOC110526097 | LOC106576849 | other | downstream | 2151702 | 60430184 ~ 60495300 (-) |
| LOC110525695 | LOC106576879 | other | downstream | 3457791 | 59144373 ~ 59199471 (-) |
| G70013 | NA | other | upstream | 659949 | 63277208 ~ 63277752 (-) |
| LOC110526867 | LOC100136521 | other | upstream | 1752643 | 64369803 ~ 64384521 (-) |
| tjap1 | tjap1 | other | upstream | 4201585 | 66806836 ~ 66883731 (-) |
| LOC110527436 | ppp2r5d | other | upstream | 4377423 | 66965664 ~ 67010646 (-) |
| LOC110527584 | LOC106576720 | other | upstream | 4769250 | 67386509 ~ 67389299 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01180000_06632984_06634975 | FIGNL1 | coding | CI01180000 | null | 6632908 ~ 6635588 (-) |
