LOC110526580 (LOC106576805)


Basic Information

Item Value
gene id LOC110526580
gene name LOC106576805
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 62621960 ~ 62630539 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036982281.1
ACACAAATTGAAATAGAAATCAAAAGTTACCTTATTGCTTTTTGCTCTACAGAAGGTATTTAATCTGATAACCTCAAGTGAGGTACCGGAATAGAAAGACTACATCAACCACAATCCATTGCAGGTCATGTATATCCACGTTTCATGTGACGATAGATGATGGATGACAGCTGTGGGCCAAGAATAAAAGGACCGTTGATCTGCAACAGAACATTATGGATATCTTCTGTTTGGTCGTTTTGTCCTCAAATTGAACAGCTGAAATCTTAGCAAAGTAGCAGTTTACATAGTTAACCAgtcaaaaaaaaattctgaagaAAAATATCCAGCTACCAGAGTAATCGACAGCAATATACTGCTTTGACAGctaagctagctagttagcacacCAGATAGGTTCTCGACCAGACGTGTGACCAAGTAGTCACACCCTAATCTGGGGCAACATGAGTGAAATGTAGACCAGAATAATGCAACATGTAGTAGGACTTTTGTCATCGTGAAAGAAATTCATTTTTTTCAGAATCTGGACATGGCTGCCTCATCATGCTACAGCCGCCCGCGAGATAGCGCTTGCCAGCCAGTCTGCTAAATCAACTAGCTACATCGGAGCTTGAAAACAATTCGTTTTTTTTGTTGCACATATAATATTGTGGTATTATGAATTCACCCATGTATACATTTGTCGCCCGAGACGACAACAGTACTATTTATGCTGAAGTTTCCAAAATTCTCGTCGCTACTGGACAATGGAAGAGACTGAAAAAGGATAATCCCCGATTCAACTTGATGTTGGGCGAACGGAACAGACTGCCATTTGGACGGCTTGGTCATGAGCCTGGACTGATGCAACTGGTGAATTATTACAGAGGAGCAGACAAGTTGTGCCGCAAAGCATCTTTAGTCAAGTTAATCAAGACTAGCCCGGAGCTTCCAGATCCTGGCAACTGGTTGCCTGAATCGTATATCATCTATCCTACTAACCTCAACACTCCCATTGCGCCTGCAAAGAATGGCATAAGCCACCTGAAAAGTAACCCCAAGACGGATGAAAGAGAAGTTTTCCTGGCCTCTTATCACTCAAGGAAGGAAAGCGGAGAGGGAACAGTGTGGATCGCCAAGTCATCTGCTGGAGCAAAAGGTGCTGGGATTTTGATATCCCACGATGCAAATCAATTGCTGGAGTTCATTGATAATCAAGGGCAGGTTCATGTCATTCAGAAGTACCTAGAAAGACCACTACTGTTGCAACCTGGCAACCGTAAATTTGACATCAGGAGCTGGGTGCTCGTGGACCATCAGTACAACATCTACCTTTACCGGGAGGGTGTGCTGCGGACGGCCTCGGAGCCCTACGACAGCTCCAACTTCCAGGACGTGACCAGCCACCTGACCAACCACTGCATCCAGAAAGAGCACTCTCAGAACTATGGCCGCTACGAGGAGGGCAACGAGATGTTCTTCGACGAGTTCCGGCAGTACCTGCTGAGCACCCACAACATAGTGCTGGAGACCAACATTTTACCTCAGATAAAGCAGATTATAAGGAGCTGTCTGACATGCATTGAACCTGCCATCAGCACTAAGCACTTGTCCTATCAGAGCTTCCAGCTCTTCGGCTTTGACTTCATGGTGGATGAGAGCTTCAAGGTGTGGCTGATAGAGATTAATGGAGCTCCGGCCTGCGCACAGAAACTCTACCCGGAGCTATGCCAAGGTATCGTGGACGTGGCCATCTCCACTGTCTTCACACTGAACAACGATTCCGAACCACGatcatcttcctcctcccctgctccctactcctcctccccttcattttcTGCTCTCACCTCATCCTCTTGTTCCTCTCCGAAACTGAGAGGACCTCTCCACGTGGGCCCATTCACCCGATtgtaagtcccccccccccccccccccccccgcttcagAAGTTCCACCCTCCGCTCCTCACTTCTAGGCTTTTCTGAGAGGTCCTACAGGTCTGGAAGCTTGCCACCTCATTGGTTCTTGTTTGGCAAGTCTCAAAGTGGTTTACCCTTGTGATTGACTGAAGATTGAATGTGGGACCTTCTCGTATGTGCTACCAGATTTTCCTCTCTCATACACCACAATGGAAGGGCATTTCAGAGGAAAGCCTGGGCAGACATGCAGAATATGAATGTGGAGACTTGGTGAATGTTtgggtgatgatgatgaatgggCGACAGACTGATGACCGGTTTGGGGGTCCCAGAGCAATGAGAGAAGCCCTTGTGTTTCAGTGCTGCCACTGAGGCTCCCCTAGACTGTGTATGGATGACCTCTGAAGATGGAGGGGATGCTTTACTTATTATACAGACTAGTGCCTTACATCTCCACCCATACCCACTTAAAGATGCAACCTGACGAATTAGCATAGCATTTCTGCTACTGTGTGTTACGTGAGCCAGTGTATTGTCGGTCaggcaagtgtgtgtgtatgtgcgatgtagactctttttttttttattattatttttttcttcttctctctctgggTTTGTAGATCTTTGGGTTTATCCACAAAAGTTAGCATTCCTACATCTTTGTTTCATATCATGGTTATTCACAAAGCCCCGGAGAGTTTTGTGTACTGCAGTTTTTAAAAGTATTAAAGCAAAAAAATAGGAGGCATCCAGTTTCTATTTTATTGCTATGTAAATTGTATTATAGCTATTTGATAGCTATTATTCTGCGCATGCCGTGTAGTTTTTTTAGGTCTTCGATTTGAGACCTTTTTTCCCCAAGTTAATTTAGTCAGTGTTGTTAATTCCCCCCTTGTATAAGAGAAGATTCATAGACAGATTACTTATTTCTGT
>TU75787
TCTTTGGGTTTATCCACAAAAGTTAGCATTCCTACATCTTTGTTTCATATCATGGTTATTCACAAAGCCCCGGAGAGTTTTGTGTACTGCAGTTTTTAAAAGTATTAAAGCAAAAAAATAGGAGGCATCCAGTTTCTATTTTATTGCTATGTAAATTGTATTATAGCTATTTGATAGCTATTATTCTGCGCATGCCGTGTAGTTTTTTTAGGTCTTCGATTTGAGACCTTTTTTCCCCAAGTTAATTTAGTCAGTGTTGTTAATTCCCCCCTTGTATAAGAGAAGATTCATAGACAGATTACTTATTTCTGTCAACAGAGTATTTGTTGAATGACTAGAGAAACCTTCCCTGTCCAACTGAGACTAGATTTGCAACTTTCTAACATTTCAAACTATTTTGAACCTTCTATGGTTCTGCCAGTAAAACTGTTAGAATTAGAATCGGTCACTTTTATTCTCCCAAGTACATTTACATATAGGCCTACTTGGAATTTGATTCGGTGAAATGGTGCTGCCACAGTACACAGAATCAACAaacagaatatagatgataAACATATACAGATGGAATATATTGACAAGGAATTTACGAATCCACATACACTGTACACAGTTACGCACAGGGGACCTCCGCTACAGCTGTAAATCAGTTTTTGTCATCTTAAGAGGGACTGCATGTTGGTGTGGATGCATGTCAGTGTCTTATCTCCTAATGCAAGTAGGCCTATTCTCCCATTTTGCCTCTAATACTGAGAGTTCTTAGCCAAGCACTTCCTTTAAAATGGTCTCTTTATACTTTTTACCTTCCCAATAGGTCCATGAGACGCACctgtttgtcaagaactgcattgCATTTTGACACCAGATGTTTTGAAATAGATTTGCGTAGTTCTGCACCAATTGCTTTTGCAGaaatgtttgtttagtgtgtgtgttggtgatgcTTGCTCAAAGAAAATGTGTTTCTTGTTAGTTTTTGCTTGTTTATTTAAAACATGTAGTGAACTTGAATTAAACGTAGTAGCTTCAACCCCTGAATTGACTTAATGTCAATGcaagtttttttaatttttttttaagcGGCAATCCATAGCAGTGAAACGGCCACGTCCATTTGCGATCTTACAACAACAGACCaacactgtcccccccccccctcggacATCATTGCATGCGCGATAGAACAGCAGTActgagtttttttttcttctttttaccACGATGCTGGATGCTCCTTTCTTCAAAACGATAACAAATGCGCCTGGGGCGGATCTCAGATTTaagtgtatttattttttaagtagTTTAAGACTATAAACACAGTCAGTTAGGTTTTTAACACCGCTTCCATGATGTTAAGTGAACTTGTGAAACCTGCCTGCTAGAAAGTTGTTTTCCCTGCCCTTGTCTCTTTCTGTGTTTACACTGTGATATTCAATGTAGAACACCTGACCACATTCAGTTTACAGATGCTTTGTAGCATTATCACCAACAGTTATCCCATAGATTAAGTTACCTTGTCCTATGTTAAACTTTGTTTTAAGTATGAGTTAGTCCCTTAGCCACCAACTTCTTTCTTCAATATCACacattttcaaatatttttaGTTGAGGAAATGCTTCAACGTGTTTTGAGTGAAACACTACTTAAGGGACAACATTGAGACATTTAATCACTGtcttttttttatgtttaaagATTGCTATGAAGTATGGTATGAATGACTGCTTGAATAGTATCTGTTTGATATGCACATGGTCAAAGCATACAATGTTTATGAATTATAATCTATTTGTGGTTAAATGTTCGGTTAGTTTGTATATCAGAGGGGCACAAAAAAAAGGTGTTGTTTTCTAGATTGTTTTGCAAAATAAAAAAGACCAACTGTATTATTCAACACATTGCTTGGGAAAACAACCAAAGGAAATGATCAGTATTATTATACAAATTGGGGAAATGTCTTTCCATCAAAGGGAAGGGGTGCCTTAGTGGGAATTGCCTCTTGATGTTGGGAAGAAGCAATAGACCTCCTGCATATAAATGCACCTTTCATTTGTTTGATTGTAAAGATGTGAATTTGCCTATTGCTATTTGGcatatgtgtctgtgtgactgtttTAATTGTTCAATCTTTTGTAATGTCTGGTTGTACTCATGCAGAGTTTCTTTGCACTGAACGTTTCCCATTTTTAATTACCTGCTTGGTAGGTTATGAATTCTTATTTCTTATCAATGAGAACTTGTTTGTATGTCTAAAATCAATCCACCCCTCAGTATTACTTCCCCAGCTATGAAATCTGTGGGtttgatgtatttcaagtcctTTTAAAGTGCATTCTGTATCTTCCTTTGAGTGTATCATGGCCATGGGAGACAAAGAAGTTAGATTGCAACTTTAAATCAATCATTATCAAACATTTTCACTAAACCAAGGCAGCCAAGAATAAATAAATCGGTTGACACAAAAGCAACATTGGCACATTGAAATGTTAACCTCTCCCCCAGTCAAAATGATTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036982281.1 False 2840 mRNA 0.45 7 62621960 62626710
TU75787 True 2518 lncRNA 0.36 2 62626399 62630539

Neighbor

gene id symbol gene type direction distance location
LOC110526555 LOC106576807 coding upstream 13532 62585864 ~ 62608428 (+)
LOC110526548 LOC106576808 coding upstream 95658 62505171 ~ 62526302 (+)
LOC110526533 LOC106576809 coding upstream 129049 62435282 ~ 62492911 (+)
LOC118965226 cdc26 coding upstream 180829 62440764 ~ 62441131 (+)
LOC110526511 LOC100194723 coding upstream 231952 62383690 ~ 62390008 (+)
polr1b polr1b coding downstream 4844 62631554 ~ 62651962 (+)
cyp1b1 cyp1b1 coding downstream 109061 62735771 ~ 62739992 (+)
LOC110526628 LOC106576800 coding downstream 237491 62864201 ~ 62874655 (+)
LOC110526643 LOC106576799 coding downstream 297279 62923989 ~ 62948072 (+)
ide LOC106576795 coding downstream 357233 62983943 ~ 63030621 (+)
G68530 NA non-coding upstream 1408 62620318 ~ 62620552 (+)
G68478 NA non-coding upstream 4696 62612665 ~ 62617264 (+)
G68477 NA non-coding upstream 11935 62609749 ~ 62610025 (+)
G68498 NA non-coding upstream 53341 62568353 ~ 62568619 (+)
G68479 NA non-coding upstream 81527 62540115 ~ 62540433 (+)
G68547 NA non-coding downstream 32211 62658921 ~ 62659149 (+)
G68555 NA non-coding downstream 38422 62665132 ~ 62665475 (+)
G69461 NA non-coding downstream 190656 62817366 ~ 62877244 (+)
G69507 NA non-coding downstream 256227 62882937 ~ 62883175 (+)
G69511 NA non-coding downstream 263366 62890076 ~ 62890408 (+)
G67930 mcmbp other upstream 888572 61729765 ~ 61733388 (+)
G67806 LOC106581772 other upstream 1306708 61314874 ~ 61315252 (+)
G66188 NA other upstream 2679896 59941486 ~ 59942064 (+)
G65442 NA other upstream 3296831 59324636 ~ 59325129 (+)
G64338 NA other upstream 3921581 58699296 ~ 58700379 (+)
G70011 NA other downstream 648253 63274963 ~ 63275296 (+)
LOC110526969 stk32c other downstream 2182879 64809255 ~ 64946164 (+)
LOC110527164 LOC106576754 other downstream 3289025 65915581 ~ 65922285 (+)
G73515 NA other downstream 3660969 66287679 ~ 66288469 (+)
LOC118965274 LOC106576739 other downstream 3793785 66417495 ~ 66424081 (+)

Expression


Co-expression Network