polr1b (polr1b)


Basic Information

Item Value
gene id polr1b
gene name polr1b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 62631554 ~ 62651962 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607695.2
tatgagattaataatgtagggtatgtaaacatattaggtagcattgtttaaagtggctagtgatatattttacatcattacATCAATACATAGAGCAACTGAGATCGGATATCTATAGACTTCTAGCTGTTTGGTTACAGTGGACATTATCTTTGATGCTGAAACTGATTTAGACATAGCATTACACTTTAGATGCTGTTTGGTAATTCATTTTTCTCACTTCTATGAATAGTCAACCAAACTAATACAATTACATTCAACAAGACGGTTTGATTTAGTTTGATAGCTCTGAAAATTGGATGCTGTCCCTTTAAAGGAATTGACCTTTCACTCACTTCCTATTACAACGATTGTACTTCCTGTGTAACTATGCGCATGTGGTAAACAAGAATAAGCATGGATTTTGCGAGTAAGTGGAGTAGTTTACTGACAAGTCCAAGCCTTAAACATTTAACAGAAGCAGGCTACGGCATACCGAAGGAAAAACAACATGCCGCTGTTCAGGACCTAACGAAGGCTCATATTGAGTCGTTTGACCAAGCAGTTTCAGAAGGACTGTGTCGTGCTGTACAGGCCATCCGTCCCTTGGAGTTTATGTTTAAAAATGACCGGATCAGCCTGGCATTTGTGGAGGCCACCATCTTTAAACCAGTGGTGGGCAAAGGAAGCATCTGCCGGGACCTGAGGGTGTTCCCAGCAGAGTGCAGAGGGAGACGCTGCTCCTACCGGGGGAAGCTTGTGGCAGATGTCAGCTGGTCCGTGAATGGGGTTCCCAAAGGCATCATCAAGCAGTCTCTGGGCCAGTTGCCCATCATGGTGAAGTCTAGGCTGTGTAACCTACATGGGCTCCCTCCCAAAGAGCTCATTGAGCACCATGAGGAGGCTGAGGAAATGGGTGGTTATTTTATTGTGAATGGGAACGAGAAGGTTATTCGCATGCTGATCATGCCAAGGAGGAACTACCCTATCGCTATGTCAAGGCCGAAGTGGAAGAACAGAGGCCAGGGATACACTCAGTATGGTGTCTCAATGCACTGTGTGAAGGAGGAGCACACCGCTATCAATATGAACCTGCATTACCTGGACAATGGGACTGTGATGCTCAACTTCATATACCAGAAAGAGCTATTCTTCCTCCCCCTGGGCTTTGCACTAAAGGCTCTAGTGGACTTCACAGACTTCCAGATTTACCAGGAGCTGATCAAAGGTCGTGAGGCGAACTCCTTCTACAAGAGCTGTGTGTCTGAGATGCTGCGACTCGTCATGGAGGAGGGCTGCATCACCCGCGGCAAGGTGCTCAACTACCTGGGCGAGCGCTTCCGGGTCAAGATGAACCTGCCAGAGTGGTACACCCATGAACAGTGTGCCAACTACCTGCTAgaCCAGTGCATCTGTATCCACCTGAGGTCGGACGTGGAGAAGTTCTACCTGCTGTGTCTGATGACGCGGAAGCTATTCACGTTTGCCAAGCAGGAGTGCATGGAGGAGAACCCGGACAGTCTGATGTGTCAGGAGGTGCTCACGCCAGGACGGCTCTACCTAATGTTTCTCAAGGAGAAGATGGCTGCCTGGATGGTGTCTGTGAAACTGTCTATGGACAAGAGGGCCCATAGGCTGACTGGTGGGATGAGCTCTGATAATCTGGTGAAGATGTTCAACATGGGCTCTGATGTTACTCATCCCTTTGAGTATCTGCTAGCCACTGGGAATCTCACTTCAAAGACGGGTCTGGGCATGCTCCAGAACACGGGACTGTGTGTGGTGGCCGACAAGCTCAATTTCATCCGCTACCTGTCCCACTTCCGCTGTGTGCACAGAGGTGCAGCCTTTGCCAAGATGAGGACCACCTCCGTACGTCGTCTGCTGCCCGAGTCCTGGGGCTTCCTGTGCCCTGTGCACACCCCCGACGGAGAGCCCTGCGGCCTCATGAACCACATGACGGCCCACTGTGAAATCATAGCCCCGGCCCTGCCCACCACCACCCTCCCTGCCCTGCTCTGCTCCCTCGGTGTGACTCCTGTGGATGGTTCTCCTGGCAGGGCCTACACTGACTGCTATCCTGTGCTCCTGGATGGTGCCATGGTGGGTTGGGTAGAGACTGATCTGGCCCCCTTCCTCGCAGACTCCCTCCGCAGGTTCAAGGTGTTGAAGGAGAAGAAGATCCCTCCCTGGACTGAGATAGTTCTGGTTCCCCAGACCAGCAAGGCCAGCATGTACCCAGGCCTGTACCTCTTCACCACCCCCTGCCGCATGGTGCGGCCTGTTCACAACCTGGCCCTGGGCCAGCAGGAACTGATCGGCACCTTTGAACAGCTCTACATCAACGTGGGCATCAGTGAGGATGAGATTGAGCCGGGTGTGACCACCCACCAGGAGCTCTTCCTCCACAGCATGCTGAGCGTGGTGGCTAACTTTATCCCTTACTCGGACCACAACCAGAGTCCCAGGAACATGTACCAGTGCCAGATGGGTAAACAGACCATGGGCTTCCCCCTCCACTCGTTCCAGGACCGCTCGGACAACAAGCTGTACCGCCTTCAGACCCCTCAGAGCCCTCTGGTCAGGCCTGTCATGTACGACCACTACAACATGGACAACTACCCCATCGGCACCAACGCCATTGTCGCTGTGATCTCCTACACTGGCTACGATATGGAGGACGCCATGATCCTGAACAAGTCCTCGTGGGAGAGGGGCTTTGCTCATGGCTGTGTTTACAAGACTGAGCTGGTGGACCTGGCAGAGAAGATGAAGGGCGAGGACAACCTGGTGTTTGGGGTCAAACCCGGTGACCCCAAGGTAATGGACAAACTGGACGCTGATGGGCTGCCCTCCATCGGCACAGTGCTACAACATGGAGACCCCTTCTACAGCTACATCAACCTCAACACCGGACAGACCTTTGTCAACTTTTACAAGAGTCAAGAAAGCTGTGTAGTAGACAACATCAAGGTGTGCAGCAATGACGTGGGCTCGGGCCGCTTCAAGCGCGTCTGCATCACCGTGCGAGTGCCCCGTAACCCCACCATCGGGGACAAGTTCGCCAGCCGCCACGGGCAGAAGGGTATCCTGAGCCGCCTGTGGCCTGCCGAGGACATGCCCTTCACAGAGAGCGGCATGACCCCCGACATTCTGTTCAACCCTCACGGCTTCCCCTCCCGCATGACCATCGGCATGCTCATCGAGAGCATGGCCGGCAAGTCGGGCGCCCTCCACGGCCTGTGCCACGACGCCACTCCCTTCACTTTCTCCGAGGAGAACTCGGCACTGGAGCATTTTGGGGATATGTTGCGCGCTGCTGGCTACAACCACTATGGCACCGAGCGCCTCTACAGCGGCCTCAGCGGCCTGGAGCTAGAGGCGGACATCTTCATCGGCGTGGTCTACTACCAGAGGCTGCGTCACATGGTCTCCGACAAGTTCCAGGTGAGGACCACTGGCGCGCGGGACAAGGTGACCAACCAGCCGGTGGGCGGAAGGAACATCCAGGGGGGCATCCGCTTCGGGGAGATGGAGCGCGACGCCCTGCTGGCCCACGGGACATCCTTCCTGCTCCACGACCGCCTCTTCAACTGCTCTGATCGCTCTGTGGCACAGGTGTGTGTGGACTGTGGTAGCCTACTGTCCCCTCTACTGGAGAAACCACCACCCCACTGGTCGGCCACACGCCACCGCAAGACTGTCTGCCTCCTCTGCGGCAAGAGTGACTCCATCGATACGGTGTCTGTGCCATACGTCTTCCGCTACTTTGTTGCCGAGCTGGCGGCGATGAACATCAAAATCAAATTGGACGTGAAGTAAATTCAGTGTGAAGTTTGTTCAGTCTACCTACCAGCCACAGACAGTGCTATATTGTGCACAGGAAGTTTGTCTTCTCCCGTGTGTGACTGGCAGTGTTCAGATATTAGGCCTTATGTTTTGTATTAAATGCTTTATCTCCAAATATTATCTGTCACatgtaaaagtaaaaaatatgATTGCAAAGAACTTACTGGAGTTTACACAATTACCTGAACTACAAAGCCATACTGCTCACCAGAATGGCCAAGTGCTTGAGGTTTACCCTCTTGTTGTCCAGAATGGTCTCTACCTATCATAAGTTATGGCTAAATTGAGACTTTGGTCAAGGATGGATAGAACTTTCCAAAAATGTTCAGAAGTTACAAAGATATTGTACAGTAACTGTCTAACATACACAATATTGTTTTGTAAGTCAGTATATTTAGAGTGAAATACTCTAAGAAAATACATTGTGATGGTGTACATTGCGCATGACACAGTCGATTGTGACTACTAGGTAATAAAAGGTTTGTCAATGACTAACTACACTTTACTCTTCAGACTGACAATCGATACACGTTCAAGTTGTTCCTGTCATAACCAGCACTTTGAAGGAGACAATGTTGTTCACAGGGCTTTAGATTCTTGTGTCCTGTTTCTTATACCTACCAGAAgatgctggtgggaggagctgtaggaggacaggctcattataatggctggaatggaatcaatggaacggagcGTTGTTTCCATTGGTttgattccgttccagccatttaCAATGAGccgctcctcccaccagcccacCAGCCCACTGCTACCTACTTCCCCCAACAGATAAAGTAGTCAAAtgtataatattttttattttaagagTAGACAATGACCAAATGACGTGGCCTATTGCATTGTTATGTAAACACAATTATTACACCCTTTCACCCACATTGAAGATGAAAGAAAAGCAGCTGATTTTGATTTTCACAATTCCCTTTTTACAAGAAACCCATGTCATTAATGCAGGCCTTTGGAAACAATCTTCATTTAcggtacatttggaaagtattcagaccccttgactatttccacattttgtttgtaAGCCGTATTCTAACATtgccccctcaatctacacacaataccccataataacaaagcaaaaacagttttatttttaaatttgcaaatgtattaaaaataaaaatgtaatcacataagtatt

Function

symbol description
polr1b Enables RNA polymerase I activity. Involved in neural crest cell migration. Predicted to be located in nucleus. Predicted to be part of RNA polymerase I complex. Is expressed in several structures, including alar plate midbrain region; eye; liver; musculature system; and optic tectum. Used to study Treacher Collins syndrome. Human ortholog(s) of this gene implicated in Treacher Collins syndrome 4. Orthologous to human POLR1B (RNA polymerase I subunit B).

NR:

description
DNA-directed RNA polymerase I subunit RPA2

GO: NA

KEGG:

id description
K03002 RPA2, POLR1B; DNA-directed RNA polymerase I subunit RPA2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607695.2 True 5005 mRNA 0.50 15 62631554 62651962

Neighbor

gene id symbol gene type direction distance location
LOC110526580 LOC106576805 coding upstream 4844 62621960 ~ 62630539 (+)
LOC110526555 LOC106576807 coding upstream 23126 62585864 ~ 62608428 (+)
LOC110526548 LOC106576808 coding upstream 105252 62505171 ~ 62526302 (+)
LOC110526533 LOC106576809 coding upstream 138643 62435282 ~ 62492911 (+)
LOC118965226 cdc26 coding upstream 190423 62440764 ~ 62441131 (+)
cyp1b1 cyp1b1 coding downstream 83809 62735771 ~ 62739992 (+)
LOC110526628 LOC106576800 coding downstream 212239 62864201 ~ 62874655 (+)
LOC110526643 LOC106576799 coding downstream 272027 62923989 ~ 62948072 (+)
ide LOC106576795 coding downstream 331981 62983943 ~ 63030621 (+)
LOC110526678 LOC106576796 coding downstream 423415 63075377 ~ 63145544 (+)
G68530 NA non-coding upstream 11002 62620318 ~ 62620552 (+)
G68478 NA non-coding upstream 14290 62612665 ~ 62617264 (+)
G68477 NA non-coding upstream 21529 62609749 ~ 62610025 (+)
G68498 NA non-coding upstream 62935 62568353 ~ 62568619 (+)
G68547 NA non-coding downstream 6959 62658921 ~ 62659149 (+)
G68555 NA non-coding downstream 13170 62665132 ~ 62665475 (+)
G69461 NA non-coding downstream 165404 62817366 ~ 62877244 (+)
G69507 NA non-coding downstream 230975 62882937 ~ 62883175 (+)
G69511 NA non-coding downstream 238114 62890076 ~ 62890408 (+)
G67930 mcmbp other upstream 898166 61729765 ~ 61733388 (+)
G67806 LOC106581772 other upstream 1316302 61314874 ~ 61315252 (+)
G66188 NA other upstream 2689490 59941486 ~ 59942064 (+)
G65442 NA other upstream 3306425 59324636 ~ 59325129 (+)
G64338 NA other upstream 3931175 58699296 ~ 58700379 (+)
G70011 NA other downstream 623001 63274963 ~ 63275296 (+)
LOC110526969 stk32c other downstream 2157627 64809255 ~ 64946164 (+)
LOC110527164 LOC106576754 other downstream 3263773 65915581 ~ 65922285 (+)
G73515 NA other downstream 3635717 66287679 ~ 66288469 (+)
LOC118965274 LOC106576739 other downstream 3768533 66417495 ~ 66424081 (+)

Expression


Co-expression Network