cyp1b1 (cyp1b1)


Basic Information

Item Value
gene id cyp1b1
gene name cyp1b1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 62735771 ~ 62739992 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955606.1
CTATGATGCTATTTGACACTTCTGTTTGTGATAAATCATTAAACTCGGGACAGCAGAAGGCTATTCGCATGTGGAGTGTGGAAGGTCTAGAACTGCACCAAATGACAAATTAAGTTACTGGACGTATAATGGGTTACTTGCTTGTCTATTGTGCAGGTTATGAGGATTTTATTCTCCAATAATCCTTACTTTCAATCACTGGATCCGCTATATAAAGACGTGACCTATAATTACCGTGCTTCTTGCATTTATATTAAAATGTAGTCTACCATCGGCATCGACGGGACAAAGGACAGGAGCTTATTCATCAAAACATCTATTAGTAACCGACAGACTGCAATTAACATAAGGCTGTTCTTTACTTGGAAGAAGCAACGAATTGACTGCAAGGCTTCATAATGGACATGCACATTATATTCGAGGAGATGACCTGGCCATCGCCACGGAGTATATTATTGGCGTCTTTGACTGTCGTCTTTGCCGTGCACCTGTGGCGCAGGATCAGGCGGAACTGGGACGTATGCAGCCCGCCTGGACCCTTCGCTTGGCCGGTCATTGGGAACGCATTAGAGGTTGGCAAAACTCCTCACCTCTATTTCTCTCGCATGGCACGGAAATATGGGGATGTCTTTCGAATCAAACTTGGCTGCCGGGATGTCGTGGTGCTGAATGGCGACGCAATCAGGCAGGCGCTCATCAAAAATGGATATGATTTCGCAGGCAGACCGGACTTTACTTCTTTTCAATACGTTTCCAATGGCGATGGCATTGCTTTTGGAAAATTCAGCGAATGGTGGAAAGTGCACCGAAAAGTAGCCCAATCTACTGTTCGGATGTTTTCCACCGGCAACATGAACTCCAAAAAGACCTTCGAAAACCACGTTGTCTGCGAAGTTAGGGAGCTGCTCCGTCTTTTCCTGGGAAAAACGCAAGAGCACAAATATTTCCAGCCGATGACATACTTGGTGGTATCAACAGCTAACATAATGACCGCCGTGTGCTTTGGAAAGAGGTATTCCTACGACGACGCAGAGTTTGCGCAAGTTGTGGGGCGAAATGATCAATTCACCCAAACAGTAGGGGCTGGGAGCATCGTTGATGTGATGCCTTGGCTCCAGTATTTTCCCAACCCAATAAAAAcaatttttgacaattttaaagAGCTCAACCGGGAGTTCAGTAAATTTATCGTTACTAAGGTTGTCGAGCATCGAAAGACCATTCAGCCAAGCACAATCCGGGACATGACAGATGCTTTCATCATGGCATTGGACCATTCTCAGGACAGCTCGCCCGGAGTCTCACCAGGCAAAGATTATGTGCCACCTACTATTGGTGATATTTTTGGAGCAAGCCAAGACACACTGTCTACTGCACTCCAATGGATCATTCTGATACTTGTGAGGTTTCCTCATATCCAGCTGCGTCTCCAAGAGGAAGTGGACAAAGTGGTCTACCGGAGCCGTCTGCCCACCATGGAAGACCAGTCTCAGTTGCCTTACGTGATGGCCTTTATCTACGAGGTGATGCGCTTCACCAGCTTTGTGCCTCTCACCATTCCCCACAGCACCATCACCGACACTACCATCATGGGCTACACCATCCTCAAGGACACAGTGATCTTCATCAACCAGTGGTCCAGCAACCACGACCCCGCCAGGTGGACACAACCAGAGACCTTTGACCCCCTGCGCTTCCTGGACCAGGACAGCTCTTTGAACAAGGACCTGGCCAGCAGTGTGCTCATCTTCTCCTTGGGAAAGAGGCGGTGCATCGGAGAAGAGCTGTCCAAGATGCAGCTGTTCCTATTTACTGCATTGCTGGCACACCAGGCCCACTTTAGTCCCGACCCGGACAAGCTGCCCACCATTGACTACACCTATGGGCTGACCCTGAAGCCCAATAACTTCTCCATAGCAGTAAATCTACGGGACACCATGGACGTCTTGGAGGAGGCTAGCCAAAGGCCCTTCTATGGGGAGACCCAGGAGGACACAGGCAACTCCAGATCAGACTGAGAATATAGTTGCCAAAAGCATTACAAAAAACGGCAAATGAAGCTTTTAAGAAGTAGATTCATGAACTGAAATTCTTCCTCATGTGCTATCAGGTATCAGCTACCAAAtagttaaaaaaatgtatttatgaacTGAACACTCAGGCAAAATACCCTTCATATACATCTTTATTTTCTTTGTTTTACAGGTAATCACTCATATGACTGTGGCTCACAAAAATGCAACTTTTAAAGATGGTTTTTAATAGGTTATTGCACTGATGTTTGTTTATCTTTCACTGGAACATgccagaacatttaaaaaaaagcgtGCCGTGTTCATCTTAGGGCGATGGCATGTTCTTTTACACTTGTTTGCCACTTCACCTGCCTGACTGTATTTACTGGAATATTGACCAATTGGAGTTGATTCAGTTATTTTGCTTGCACCCACCACCTCAGAGAGTGTACCTTTTATGGCCCAAATGATCTCCCAACAAGGTCAATATGATACAGAGAGAATCTTGATTTATGTAAATATAGGTAACTAGGTAGATAGTAATACCAACCTTCTTACCATTAAAAACAATAATTATGTTTTAAGTGACATCGTGTTGGTAATTCTAATGAGCAGCCCTACCCTAAATTTGACATATGCACTAAGGTTTTACAGAAAACTCAGATTGTTGTGCTTTTTAAAAAATTTAGTCaactttaaaaaacaaaatatgGCAACCAGCTCTCATCAAGgcacagggtggctactttgaagaatctaaaatctaaaacacATTTAGATGTCTTTatcacttttttgattactacatgattccatgtgtgttctttcatagttgtgatgtcttcgctattattctacaatgtagaaaatagtaaaaaataaagaaaaaccctggaatgagtagggtgtggacaaacgtttgactggtactgtacattcgaGTGTGTGTTATGTCTTCATGCGCTTGAACGTTCAAATGGCTGTTCTTCATATATACCATATCATTAAGATTTTTCATTTAAGATACCAGTTATCAAATGATTTATTCTCCATGTTGTATTGAATAGAGAACATAATCATTGTGTTACTGCAACTGTGATGTTGCTCCGGTGAGAGTATTTTACGATATCTATCTGAACGGATGACATTGCGTTGATGAGTAAAGGTCATATGTGTGATATTATACAGTAATACTAAATTAAAGGACATTTTAAT
>NM_001174149.1
ATAATGGACATGCACATTATATTCGAGGAGATGACCTGGCCATCGCCACGGAGTATATTATTGGCGTCTTTGACTGTCGTCTTTGCCGTGCACCTGTGGCGCAGGATCAGGCGGAACTGGGACGTATGCAGCCCGCCTGGACCCTTCGCTTGGCCGGTCATTGGGAACGCATTAGAGGTTGGCAAAACTCCTCACCTCTATTTCTCTCGCATGGCACGGAAATATGGGGATGTCTTTCGAATCAAACTTGGCTGCCGGGATGTCGTGGTGCTGAATGGCGACGCAATCAGGCAGGCGCTCATCAAAAATGGATATGATTTCGCAGGCAGACCGGACTTTACTTCTTTTCAATACGTTTCCAATGGCGATGGCATTGCTTTTGGAAAATTCAGCGAATGGTGGAAAGTGCACCGAAAAGTAGCCCAATCTACTGTTCGGATGTTTTCCACCGGCAACATGAACTCCAAAAAGACCTTCGAAAACCACGTTGTCTGCGAAGTTAGGGAGCTGCTCCGTCTTTTCCTGGGAAAAACGCAAGAGCACAAATATTTCCAGCCGATGACATACTTGGTGGTATCAACAGCTAACATAATGACCGCCGTGTGCTTTGGAAAGAGGTATTCCTACGACGACGCAGAGTTTGCGCAAGTTGTGGGGCGAAATGATCAATTCACCCAAACAGTAGGGGCTGGGAGCATCGTTGATGTGATGCCTTGGCTCCAGTATTTTCCCAACCCAATAAAAAcaatttttgacaattttaaagAGCTCAACCGGGAGTTCAGTAAATTTATCGTTACTAAGGTTGTCGAGCATCGAAAGACCATTCAGCCAAGCACAATCCGGGACATGACAGATGCTTTCATCATGGCATTGGACCATTCTCAGGACAGCTCGCCCGGAGTCTCACCAGGCAAAGATTATGTGCCACCTACTATTGGTGATATTTTTGGAGCAAGCCAAGACACACTGTCTACTGCACTCCAATGGATCATTCTGATACTTGTGAGGTTTCCTCATATCCAGCTGCGTCTCCAAGAGGAAGTGGACAAAGTGGTCTACCGGAGCCGTCTGCCCACCATGGAAGACCAGTCTCAGTTGCCTTACGTGATGGCCTTTATCTACGAGGTGATGCGCTTCACCAGCTTTGTGCCTCTCACCATTCCCCACAGCACCATCACCGACACTACCATCATGGGCTACACCATCCTCAAGGACACAGTGATCTTCATCAACCAGTGGTCCAGCAACCACGACCCCGCCAGGTGGACACAACCAGAGACCTTTGACCCCCTGCGCTTCCTGGACCAGGACAGCTCTTTGAACAAGGACCTGGCCAGCAGTGTGCTCATCTTCTCCTTGGGAAAGAGGCGGTGCATCGGAGAAGAGCTGTCCAAGATGCAGCTGTTCCTATTTACTGCATTGCTGGCACACCAGGCCCACTTTAGTCCCGACCCGGACAAGCTGCCCACCATTGACTACACCTATGGGCTGACCCTGAAGCCCAATAACTTCTCCATAGCAGTAAATCTACGGGACACCATGGACGTCTTGGAGGAGGCTAGCCAAAGGCCCTTCTATGGGGAGACCCAGGAGGACACAGGCAACTCCAGATCAGACTGAGAATA

Function

symbol description
cyp1b1 Predicted to enable monooxygenase activity. Acts upstream of or within eye development. Predicted to be located in endoplasmic reticulum membrane. Predicted to be active in intracellular membrane-bounded organelle. Is expressed in several structures, including digestive system; heart; immature eye; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in Peters anomaly; anterior segment dysgenesis 6; breast cancer; glaucoma (multiple); and lung squamous cell carcinoma. Orthologous to human CYP1B1 (cytochrome P450 family 1 subfamily B member 1).

NR:

description
cytochrome P450, family 1, subfamily B, polypeptide 1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K07410 CYP1B1; cytochrome P450 family 1 subfamily B1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955606.1 False 3230 mRNA 0.43 3 62735771 62739992
NM_001174149.1 True 1628 mRNA 0.51 2 62736341 62738785

Neighbor

gene id symbol gene type direction distance location
polr1b polr1b coding upstream 83809 62631554 ~ 62651962 (+)
LOC110526580 LOC106576805 coding upstream 109061 62621960 ~ 62630539 (+)
LOC110526555 LOC106576807 coding upstream 127343 62585864 ~ 62608428 (+)
LOC110526548 LOC106576808 coding upstream 209469 62505171 ~ 62526302 (+)
LOC110526533 LOC106576809 coding upstream 242860 62435282 ~ 62492911 (+)
LOC110526628 LOC106576800 coding downstream 124209 62864201 ~ 62874655 (+)
LOC110526643 LOC106576799 coding downstream 183997 62923989 ~ 62948072 (+)
ide LOC106576795 coding downstream 243951 62983943 ~ 63030621 (+)
LOC110526678 LOC106576796 coding downstream 335385 63075377 ~ 63145544 (+)
LOC110526701 LOC106576791 coding downstream 485096 63225088 ~ 63239237 (+)
G68555 NA non-coding upstream 70296 62665132 ~ 62665475 (+)
G68547 NA non-coding upstream 76622 62658921 ~ 62659149 (+)
G68530 NA non-coding upstream 115219 62620318 ~ 62620552 (+)
G68478 NA non-coding upstream 118507 62612665 ~ 62617264 (+)
G69461 NA non-coding downstream 77374 62817366 ~ 62877244 (+)
G69507 NA non-coding downstream 142945 62882937 ~ 62883175 (+)
G69511 NA non-coding downstream 150084 62890076 ~ 62890408 (+)
G69516 NA non-coding downstream 156161 62896153 ~ 62896368 (+)
G69517 NA non-coding downstream 156794 62896786 ~ 62897000 (+)
G67930 mcmbp other upstream 1002383 61729765 ~ 61733388 (+)
G67806 LOC106581772 other upstream 1420519 61314874 ~ 61315252 (+)
G66188 NA other upstream 2793707 59941486 ~ 59942064 (+)
G65442 NA other upstream 3410642 59324636 ~ 59325129 (+)
G64338 NA other upstream 4035392 58699296 ~ 58700379 (+)
G70011 NA other downstream 534971 63274963 ~ 63275296 (+)
LOC110526969 stk32c other downstream 2069597 64809255 ~ 64946164 (+)
LOC110527164 LOC106576754 other downstream 3175743 65915581 ~ 65922285 (+)
G73515 NA other downstream 3547687 66287679 ~ 66288469 (+)
LOC118965274 LOC106576739 other downstream 3680503 66417495 ~ 66424081 (+)

Expression


Co-expression Network