LOC110526643 (LOC106576799)


Basic Information

Item Value
gene id LOC110526643
gene name LOC106576799
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 62923989 ~ 62948072 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607789.2
ATGAATACTGCGAATTTCACTAGAACTGGAAGGAATACAGAAGAATATATATTTGCGGTTGGTACTTACAAACTCCTTGCCTTTGCTATCGGAACAATTGGAGTCTTCGGATTTTGCAACAATATTATTGTCATCATGCTGTACTACAGATTCAAGAGACTCCGGACGCCTACAAATTTGTTAATAGTAAACATAAGTATAAGTGACTTGTTGGTCTCTGTCCTTGGAATTAACTTTACGTTTGTTTCGTGCATCAAAGGCGGATGGGACTGGAACTCGGCAACATGCGTCTGGGACGGATTCAGCAACAGCTTATTTGGCATCGTGTCCATCATGAGTCTCTCAGCTCTGGCCTACGAGCGCTACATCCGGGTGGTCTATGCTCAGGTGGTGGACTTCCCCTGGGCCTGGAGGTGCATCACCCACATCTGGCTCTACTCCCTGGCCTGGACAGGGGCCCCTCTCCTGGGTTGGAACCGTTACACCCTGGAAATCCACCAGTTAGGCTGCTCCCTGGACTGGACATCCAAGGACCCTATCGATGCCTCCTtcattctcctctttctcctggcCTGCTTCTTTGTCCCTGTGGGCATTATGATTTACTGCTATATGAACATTCTCTACACGGTGCGaatgCTCCGCTCCATCCAGGACCTTCAGACAGTGCAGATCATTAAGATCCTGCGCTATGAGAAGAAGGTGGCTGTCATGTTCTTGCTGATGATCTCCTGTTTCCTGGTGTGCTGGACACCCTACGCCGTGGTGTCCATGATGGAGGCCTTTGGCAGGAAGAGCATGGTCACCCCCGCCATCGCTATCATCCCCTCCTTCTTTGCCAAATCCAGCACGGCCTATAATCCTCTCATCTACATGTTCATGAGCAGGAAGTTCCGGCGCTGCTTGTTGCAGCTGCTGTGCTCCCAGCTCTCGTGGATTCAGAGCAGCATCAAGGACCGTCCCCTGGCCCGGAGCATCGAGCGGCCTATTCGCCCAATCGTCATGTCCCACCGAAGAGGCGGGGAACGACCAAAGAAGAGGGTGACCTTCAGCTCCTCCTCCATTGTCTTCATCATTGCCAGCAATGACGTGAACCACCTGGACAACATGTCCAAGAGCGGCGGTATGTCGTCAGAGGGCATCCAGGTGCGGCCGCTGTgacagagcattatgggtactgtagtacatcatgctaCACCCATGTGACCATGGGAACTGACTAATCACTTCATATCACATGTTCCTCTGTAAACCTCAGAACTTCCTCTCATGAAACACAGAACCCAGAAGTTCCAAATCACCCTTCTGACACAAGACTATTGTTTTTCTTTTTAGCCTTTTCAAGATCCATCACTATAAACTGTAGAGACTTATTCCCAACCCTCTTTCACTGTGCATCAGAAGGAACAATCCCTTCCCTGTAACCGAATGATGTAGCTGTGAGTTTGTGACCTATTTCTCTTGTCTTGAACAGCCTTTGACATAGTCTCATGCTGAGCTGAGTGTTTTTAAACAGTACCTCCTGTGTCATAACGGAAGCCAGCAGTGTTAATGGAGAAAATGATGTTGATTATTACTATTTCCCTGGTTGGCAGCACTATTGTGCTTAATGAACTTACAGGGTAAAGCCTTACAATATTGCAGCAGCATATTCTGCACAACACTCTCTCTACCTTTGTCACGTCCAGATTCATtaaatatattctatattctggGGTGAAAGTGGATTTCATTTCTTCCCGGTGCGAGGACCTCCTGTATGTGTGCACACACTTCATTCTTTTTTTTATGGGCCTATTCATAGAATTGCATATATAATCCCTATTAATTTAATAGGGTTTCTATGGGCCTATTCATAGAATTGCATATATAATCCCTATTAATTTAATAGGGTTTCTATGGGCCTATTCATAGAATTGCATTTATAATCCCtattaatttaataggatctctatgggcctaatcatagaatTGCATATATAATCCCTATTAAttgaataggatctctatgggccTAATAGTCCCGATTTTGTTGTTTAACTTTTCAAATGTATTAGCCTaccttttaatgtggcataaacacaaccagtcattatgttttcatctgattgtcaaacaattaCTTCAAAAGGTTAATGTAGGCTTCCTGTGCATGTTACCCAGGGACGGCAGAACCATTTTTTTTGACGTGCGGTAAAAAATAGTTTATAACTTCCGACATTTGTTAGGCTATTTGTTAGGGAATTTGTCTGTAATTAGATATATGCAGGTTGTCTTCTGTCATTACTTGACGCTCGTCTAGAATACTAAATAAAGCCtttgctcaccagaataatgtcataaACCGATCAATGCATCATCAACAATATAGTTGATGTCTGCAAAGTTTCTCTTTCATTTCCGCTTCTCTCATAGAGCAAGGGACCAGGGTGATTTTCCATGCAACATTTCCAAATGACAGTTTGACCGATTTTTgcatgcatattttatgtggttgaaaatgaaatactttCATCCTTTACAGTATGTCCCTGAAATAAATTGCA

Function

NR:

description
opsin-3-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04256 OPN3; c-opsin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607789.2 True 2546 mRNA 0.44 4 62923989 62948072
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110526628 LOC106576800 coding upstream 49334 62864201 ~ 62874655 (+)
cyp1b1 cyp1b1 coding upstream 183997 62735771 ~ 62739992 (+)
polr1b polr1b coding upstream 272027 62631554 ~ 62651962 (+)
LOC110526580 LOC106576805 coding upstream 297279 62621960 ~ 62630539 (+)
LOC110526555 LOC106576807 coding upstream 315561 62585864 ~ 62608428 (+)
ide LOC106576795 coding downstream 35871 62983943 ~ 63030621 (+)
LOC110526678 LOC106576796 coding downstream 127305 63075377 ~ 63145544 (+)
LOC110526701 LOC106576791 coding downstream 277016 63225088 ~ 63239237 (+)
LOC118965245 LOC106576791 coding downstream 290978 63239050 ~ 63245445 (+)
LOC110526727 LOC106576790 coding downstream 335255 63283327 ~ 63292127 (+)
G69533 NA non-coding upstream 8963 62914766 ~ 62915026 (+)
G69521 NA non-coding upstream 24397 62899368 ~ 62899592 (+)
G69519 NA non-coding upstream 25700 62898064 ~ 62898289 (+)
G69517 NA non-coding upstream 26989 62896786 ~ 62897000 (+)
G69516 NA non-coding upstream 27621 62896153 ~ 62896368 (+)
G69658 NA non-coding downstream 2862 62950934 ~ 62951220 (+)
G69662 NA non-coding downstream 5020 62953092 ~ 62953295 (+)
G69663 NA non-coding downstream 5754 62953826 ~ 62954167 (+)
G69670 NA non-coding downstream 14312 62962384 ~ 62962614 (+)
G69692 NA non-coding downstream 35430 62983502 ~ 62983721 (+)
G67930 mcmbp other upstream 1190601 61729765 ~ 61733388 (+)
G67806 LOC106581772 other upstream 1608737 61314874 ~ 61315252 (+)
G66188 NA other upstream 2981925 59941486 ~ 59942064 (+)
G65442 NA other upstream 3598860 59324636 ~ 59325129 (+)
G64338 NA other upstream 4223610 58699296 ~ 58700379 (+)
G70011 NA other downstream 326891 63274963 ~ 63275296 (+)
LOC110526969 stk32c other downstream 1861517 64809255 ~ 64946164 (+)
LOC110527164 LOC106576754 other downstream 2967663 65915581 ~ 65922285 (+)
G73515 NA other downstream 3339607 66287679 ~ 66288469 (+)
LOC118965274 LOC106576739 other downstream 3472423 66417495 ~ 66424081 (+)

Expression

LOC110526643(LOC106576799) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
End of interactive chart.

LOC110526643(LOC106576799) Expression in each Bioproject

Bar chart with 19 bars.
LOC110526643(LOC106576799) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
End of interactive chart.

Co-expression Network