vox (LOC106576785)


Basic Information

Item Value
gene id vox
gene name LOC106576785
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 63628235 ~ 63630418 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036982664.1
TATTAGGCCTACATGATGCAAACATGCACAAAGCAGTTATATTGTCCAATCATGTTGCTGTCACTGTTTCTGTGTAGGCTAGAGGTCTGGCTTtaaatataatgaatatgaacaagtacaaggttgctgcagtttgacagggGTTTTATCCTCCCCAAGGCCAGGAGTTTTgccaatacttttttttaaaccatgtgacctgattagAAAAACTCTTGGCCCATCATAGCCCACATAAAACCTTTTTACAACTGGTTAATCACCTAATACTGTAGAAGGTCTGGAGTTGTACCTGTTTAGGTTACCAGATCAGGATAAACTACTGGCCCCAGGAACAAAGATCGCCCCAGCACTCTGGAACCCGTGGTGTCACCTCTGGGATCACAAGATAGTATGCTGACCAACACAGAGCTCCTAGAGGCAAACATGGTCAAGGTCTTCTCTGTCGACTGGCTCGCACAGAGCAATCACAACACCAACCCGAAAGAAGGACCTGTGGACACTATACCAACCTACTGCAGACCCCATGTTCCTTGTATGGTCCAGCCTCAACCGCCAACATTTTATAACAAGGTCTACCTCCAACCAAAACCAAAGACCACGAGGGTTGAACTCACGGATTCCACTGAAGAACCCCAAAATCTAGAATCCAGGTTGAGCTCACCTCTGCATCCGATAACATGTTCTTCCCCAAGTCTTTCAGAAACCAGCGGGTACACCTCGGGGTATGACAGTGAGGCGGTCTCCTCGGAATGTCCCTCTGTGGAAGAgacgagcgagggagagaaagacggTGGCCAACGACGTGTGCGTACTAGGTTCACACCGGAGCAGATAGAAAAGCTGGAGAAGATTTTCAACAAACACAAATATCCAGATGCTGGAGAAAGAGTCAAAACGGCACTGAAGTTGAACCTCTCTGAAACTCAGGTGAGAACTTGGTTTCAGAACAGGAGGATGAAACTGAAAAGGGAGCTCCAAGAGTATCCAGTTCAGTCTCAGATGATGTTCCAGCCCATTCGACCATTTCAGTACCACGGCTTCGGTGAACAGCAACTCTCCCCCGCTGTAAACCACGTGATATACCAGCCCATGGTGCAACAGATCCCCATGGAACAGATGGTTTCTCATCAACACCCTTACGCATATTTCTACTAAGGACATTAAAAACTACAGACTGAACTTTCCACTCTAACACTAAATTCGAGTGAAAtctagttgttgttttttcttggACGTGAACATGTTTTATATTTCTTTAAAGATGTACAGATGTTAAAATTATATTTATCATTCAATAAAGTCTATCTTATATCACAACCTTACTTTTCTACTT
>TU78180
ATGTGAAAGGCTTCAACAACGAGGCATTAGGCCCCAATCACTGGGAATCGATCAGGCGTTAACAAGCCTTTGCATATGCACCATTTTAAGTGGGTCGGGACTTTATAGGGAGGGCCCTCAACAGGTCTTGTCACAACATTCTCTGGCCCTCTTTAGATAGTATGCTGACCAACACAGAGCTCCTAGAGGCAAACATGGTCAAGGTCTTCTCTGTCGACTGGCTCGCACAGAGCAATCACAACACCAACCCGAAAGAAGGACCTGTGGACACTATACCAACCTACTGCAGACCCCATGTTCCTTGTATGGTCCAGCCTCAACCGCCAACATTTTATAACAAGGTCTACCTCCAA

Function

NR:

description
homeobox protein vent1-like

GO:

id name namespace
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0042661 regulation of mesodermal cell fate specification biological_process
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036982664.1 False 1336 mRNA 0.44 4 63628235 63630418
TU78180 True 353 lncRNA 0.41 1 63629297 63629649

Neighbor

gene id symbol gene type direction distance location
vent LOC106576918 coding downstream 2358 63624834 ~ 63625877 (-)
blnk LOC106576789 coding downstream 302741 63293360 ~ 63325494 (-)
ccnj ccnj coding downstream 361690 63245450 ~ 63266545 (-)
LOC110526655 LOC106576794 coding downstream 404551 63148644 ~ 63223684 (-)
march5b march5b coding downstream 552895 63031594 ~ 63075340 (-)
LOC110532553 LOC106576784 coding upstream 152 63630570 ~ 63654636 (-)
LOC110526802 LOC106576784 coding upstream 24133 63654551 ~ 63679213 (-)
LOC110526836 LOC106576780 coding upstream 64189 63694607 ~ 63980715 (-)
LOC110526858 LOC106604947 coding upstream 418695 64049113 ~ 64114724 (-)
LOC110526867 LOC100136521 coding upstream 739385 64369803 ~ 64384521 (-)
G70385 NA non-coding downstream 11974 63616056 ~ 63616261 (-)
G70352 NA non-coding downstream 65327 63562528 ~ 63562908 (-)
G70350 NA non-coding downstream 68601 63559346 ~ 63559634 (-)
G70151 NA non-coding downstream 295418 63332528 ~ 63332817 (-)
G70150 NA non-coding downstream 299920 63328053 ~ 63328315 (-)
G70655 NA non-coding upstream 23619 63654037 ~ 63685264 (-)
G70687 NA non-coding upstream 94755 63725173 ~ 63725436 (-)
G70740 NA non-coding upstream 167243 63797661 ~ 63798209 (-)
G70013 NA other downstream 350483 63277208 ~ 63277752 (-)
G69210 NA other downstream 1209939 62411522 ~ 62418296 (-)
LOC110526417 LOC106576819 other downstream 1645840 61981652 ~ 61983330 (-)
G68736 NA other downstream 1941927 61682278 ~ 61686308 (-)
LOC110526097 LOC106576849 other downstream 3167001 60430184 ~ 60495300 (-)
tjap1 tjap1 other upstream 3188426 66806836 ~ 66883731 (-)
LOC110527436 ppp2r5d other upstream 3364264 66965664 ~ 67010646 (-)
LOC110527584 LOC106576720 other upstream 3756091 67386509 ~ 67389299 (-)
LOC110527687 sncg other upstream 4039171 67669589 ~ 67681775 (-)

Expression


Co-expression Network