LOC110532553 (LOC106576784)


Basic Information

Item Value
gene id LOC110532553
gene name LOC106576784
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 63630570 ~ 63654636 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036982654.1
GTGGACCTGTAGCTTCAGACGCGTGGGAGAGATTTGAGAGACACCAGAGGGCCCTGTCTGcactcagagaaacagagactaGACCTGAACATAAAGATACTGAATCAGAGGAGGGTCAACATCATGTCTGCCCAGGATTGAGAGCTGCTGAGTGTTTGGTTAAGGGGGCTATGGAGAGTGCCGAGCATCCAGTGGGGGGCGGCGATGAAAGCCCCTCTGAAGCTGACTCTCTATGGGGGACGGACGAGCCACTGAGCGTGGGCCCCCGAGGCCAGATGAGCCCTGACTGCTGTGAGGACATGGAGGACACAGAATTTCTGGTGTCTCAATGTctcctctccaccagctcaggAGCAGAGGAGTCCAGCCACAGCTACAGCCCAGCCTGGGCCCTGGCCTTCTATGGAGGGGACTGTTTTAGTCAGGATGTGGTGGAATATGCTAGGAACTTGGGACAGCATAGTGAGTCCCCATGCCTGGAGCTGAAAACACAGGAGCTTCAACAGCAGCTTATGATCGAGACGAAGAGTCTGAAAAAGACCAGACATTTCTACCAAAAGCTGCTCCATCAAGAGAGAAAAAACAAACGTTCGGATGCTAGATTGATGCTGTCCAAACTCAAAGTCCAGCTTGAGGAGTTGAGGTCCAAAGTGGAGTTTCTAGACTCTATAAAGAAATATCTGGAGGTTCTGAGTGTGGATCAATGGGGTGTGgatgtgtccctccttccctccctggcAGCCTCTGATCCAGGGAGCCCTCTGGATCTCCAGCCCTCAGAGGAGCCTGCCGTGTTGGAATTGGTGTCTTTGTCtggggcagggacagggaagagcAGCCTGCAGGCCGCCACACCCCTGGATTTCATGTCCTACCTCTATGCCAGAAATGCTCCACTGGAGGGTTATATCCAACAGTTCCTGTACACTTACCGCTATTTCTGTACCCCTCAAGAACTCCTTCAGTTCCTGATGGGCAAATTCACCAGTGTAGCAGCAGGAGGTGATCCAGATGTGTCAGGGGACAGTGCTAAGGTGTACCACCGGAGTCTGGACGTGCTGCAAACCTGGCTGACTGACTACATAATGGTGGACTTCAGCCCCAAGTCCAGCCTGCTGATGACCCTGGAAAACTTCCTCACCACTGAAGTGTCTCCGTTagacagtagaggagagagactttTGACCACTCTACAGAGGTCTCCCAGGAAGAGGTGGAGCCAAGGCTGTGGGAGCCCAATCAGCAtgcaggaggatgatgatgatgcacTGTCTGTCCATACCTCATGCAGAAAATCAGCTATTGAGTACTCTGGAAGGAAGAGCTTCCAGTGGAGGATATCCAGGGTGGTTGAGCCCCAGTCGACCCAGCCTAAAGACAAGGCCTACTCCATAGCAGCAGCCCTGCCCCGGCCCTACTACACCTCCCTTATGGATGACATCTCCAGTGCCTGCCTCAGAAGCGAAGAGAGACACCCCTTTAGTCAGAGTGAACACAGCGCCCAACACACTGCACAGCAACTCACTCTACTACAGCAGGAAATGTTTCAAGGCTGTCACCCAATTCATTTCCTCAACTCTAAATTTCAAGGAGTCAGGGACAAAGCTGTTTGTGTCACCAAACATGCGTCACACTCTGTTCCTCCAGTAGAGGGCAGCAGTCTATTTGTTCACGAAGGGACTCCACAGGACAGCCACCTCCAACAGCTACTGAGATATGCTGACAGCGTCTCCAATTGGGTCTCTGCAGATCTCGTCATCTGTGATTCGATAAAGATCCAAGCGGCTTTGCTCACCAAGTTTCTCCTAATTGCCAAACACTGCTATGAATCAAGAGACTTTGCCACAGCAATGCAGGTCCTTGGAGGCCTGGAGAATGTGATTGTCAGGCAATTACCGGCTTGGAAACATCTGTCTACCAAGGTGTGTGAGGTCCTTGAGGATCTGCGAGCCGTGCAGGTCTTTCTGAAGAGTGATAACCTGTGTCTGATGGGAGGAGAGCATGTGAGGAGGAGACCCACCCTCCCTGCTGTCCACATCCTGGCCATGCACATCCAGCAGCTGGAGATAGGAGCCTTCACTCTGACCAGTGGCGCCTACAAGTGGCCAAAACTCAGaACCATAGCCAAGGTGGTGAGTCAGGTGCATGCATTCCAGGAGACGGTGTACTCCTTCACTCCTGACCCGGGGCTGCAGGCCTACATCAGACTAAGAATAGCCCACCTCAGTGGCTGTGACATTCCCCTGCTGGCTGCAGACAACGAGGCCAACTTCCACCACAACCCCACTGACCGACACACCCGCAGGATCCAGGACACACTGAAGAGGGTGAAGGCCACCTTTCAGTGACCCCCATCCTTGCTAATCTAGGATCAATTTGGTTTATTAagtcataatgaatatgattatatgGACAGAGAGGACCTATTCCTAGCCCAGGTCAGACAACTACTCAACAGACTTTGAACCCTCCACACCCCACTGGGTTCCTATAGTAGCAGGGACTGGGTGGGTGTCTGGGAAAAACTGTTCTTTTTTCTCTGTTTATtggtaatatatattttttgtaagaaTCCAGCTCAACCTCCCACATTGCACCCCATAGCCTGACAACCCACAGCACACATCCAACTCCTTGATTGTCTCCAAAGCGGACTCCAATGTCAAGTGAAActttggaatgttttttttattttttatattgggATGAGGAGAGTAGAAAACAGTATGGGACTTTTAAAAATCCTTCTGGTGGAGGCATATGATGCTTGCGTTTCTCTTACACAAATTTTGATTGCTCGTCTCCGAGACAACATAATGATGATAATGTGCAACAATGTTTCATGATGAGTTGACGTAATGTCTTTAGTTCACTAAGTGTACTATGCTAAATTAGATATTTTGATACAACCACAGATAGCTAATGACCATTTTCATCCCTCCGGAGCACCATTTTAAATACATTGACAATGGTTATTTGACATGATAATTACAGCATTTCAAGATACAAGAGAAATATCAAAATCATGATGTATTGTGCCATTATGACAAAATGATTTCAAATACCTGAATAATTGCTATAGTTCCACACACTAAGTGTTGTTTTCTTTTTAAACAAACGTTAATGTTGCAATGTAACTATGGTGTATAGAGGCTACAAAGTCTTGCATGATCATACTTGCAAAGGAGAAATTAGATAATTTTCTAAACATGTGATTTGCAAACTAATTGAAACAACTGCAATAAATGTTTTAATAGATTGAGTTTGCTACACATTTTAAGCATGGTATGCTACCTTCTTGTCCCTGGTTGATTAATGCTAAAACATCATGAaatgttctgtctctctttcagttCAAAAAAAAATAGATCAACATACATGCATGTGGCAAAACAGAAACATAAACATTGGCATAATCATACTACCATATTTAGCACATTGATATCTTGTTAAGTTAATTGTCGTTTTAAATGGTGTATTGAATATGAGAATGAAGTGCTGTACTTACAATTAATGTATGTCTCCTAGCACTATTTCAAGCATCTAAAAACGCAAAGTAAATTACCTTGTAATCTTTCATGTTTCAGAGTCTGATGTAAATGTGCTAAATATGTTAGTTTATGCCAAATGCCTCTTTTGTTTGGTGTTTTCCCACATATGGTCATATATTTTCTGACTGAAAGAAAAGTTCATGATTTTTATATAATTCATCAACCAGGGGACGAGAATGTAGCCCACCATGCTTAAAAATGAGAAGCAAACTCAATCTATGAAAATATGTATTGTATCTTACTTGTGTTTTTGTATGGATTTATAGCAacaccacaaacaaacaaaaacaacctgATCGCTGAGGATCGGAAAGCATGCGTCAGTGGCAGGCTCATTGTGTGTGGAGATGTTATAGTTGTGCGTCCAATTTGTCTCCGACTACTAAGGACGTTGCCACAGAGGCGAGGAAATATGCTCTGTATGGAAGCGACTTCCCCCGGCGGCGTCCCGTGAGGACCGGACAGCTTCCATTGTTATCTGACGGGATCAGGGCACCTCTTCAAAGCACTCGAGATAAAGGGTCGTAATTGGGAGGCTGAGAAGCAATAGTCAGATCATCGATAAAGGAGACATTCAATATATCCTTATCTGCATTGTCATAGCTAAGCGATAATTTTAGGGGTATTGTCCCGTAGCTGCTGGGGGTCTTCCATCTGAAGAGACTGAAACACGTGAAGGGCTTCGTATACAGAGAGAAGGGACACCTGGCGACATTGGCCTGGTTGGATCATTTGGGTTGACATTATTTCTTCAACTTTCCATTTCTAGATGTTTTTGACATTCTTTCTGGCGAACATCTGGCTGGAATGCAATTTTGAACAGGCCTCTTTGGGGATATTTTACGCATGTGTAAGCTATGCAAAACCACATGTACTGTAGCCATTGTAGGCGTTTTTCAGACTTTTTTAGAGCTTGCTCTCCATTATTTACATTACAATCAAACCTAATTGTGTTGCTACTGTAATACCTTTGATCTGTAATGTTTAAACCGACTGCGCCAAATGCTGTCTGTTGGGCCAGTGGCGCCAGTGCTCACCGGGGTATCGAAGAGGTGTTAATGCTAAACCATTAGAGTAGTATTTTACTTGCCTTTGCTTTACATTTGATTTTAGTGTTGTGGAAGGGGCTTAGAAAGGAATGATGTAAATGACCAGACTGCAATGTTGTGTAAAATCATTTAAATAATTAATATCAGAGTGGTCAACTATAAAGGATGATAAAATATAATTCCATTCCCATAAAATCATAGAGGCCACAGTGATTGCCTGAAATGTATGTGTACGAACCCACGACCGGCTTTAAACGTTTCAATCAGGTGGGGTGCAGAACTCCACTTTTGGTTTAGTTTAATAAAATATATTGTTGCAAAAGCTT
>TU78174
AAAAAAAATAGATCAACATACATGCATGTGGCAAAACAGAAACATAAACATTGGCATAATCATACTACCATATTTAGCACATTGATATCTTGTTAAGTTAATTGTCGTTTTAAATGGTGTATTGAATATTCCTAGCACTATTTCAAGCATCTAAAAACGCAAAGTAAATTACCTTGTAATCTTTCATGTTTCAGAGTCTGATGTAAATGTGCTAAATATGTTAGTTTATGCCAAATGCCTCTTTTGTTTGGTGTTTTCCCACATATGGTCATATATTTTCTGACTGAAAGAAAAGTTCATGATTTTTATATAATTCATCAACCAGGGGACGAGAATGTAGCCCACCATGCTTAAAAATGAGAAGCAAACTCAATCTATGAAAATATGTATTGTATCTTACTTGTGTTTTTGTATGGATTTATAGCAacaccacaaacaaacaaaaacaacctgATCGCTGAGGATCGGAAAGCATGCGTCAGTGGCAGGCTCATTGTGTGTGGAGATGTTATAGTTGTGCGTCCAATTTGTCTCCGACTACTAAGGACGTTGCCACAGAGGCGAGGAAATATGCTCTGTATGGAAGCGACTTCCCCCGGCGGCGTCCCGTGAGGACCGGACAGCTTCCATTGTTATCTGACGGGATCAGGGCACCTCTTCAAAGCACTCGAGATAAAGGGTCGTAATTGGGAGGCTGAGAAGCAATAGTCAGATCATCGATAAAGGAGACATTCAATATATCCTTATCTGCATTGTCATAGCTAAGCGATAATTTTAGGGGTATTGTCCCGTAGCTGCTGGGGGTCTTCCATCTGAAGAGACTGAAACACGTGAAGGGCTTCGTATACAGAGAGAAGGGACACCTGGCGACATTGGCCTGGTTGGATCATTTGGGTTGACATTATTTCTTCAACTTTCCATTTCTAGATGTTTTTGACATTCTTTCTGGCGAACATCTGGCTGGAATGCAATTTTGAACAGGCCTCTTTGGGGATATTTTACGCATGTGTAAGCTATGCAAAACCACATGTACTGTAGCCATTGTAGGCGTTTTTCAGACTTTTTTAGAGCTTGCTCTCCATTATTTACATTACAATCAAACCTAATTGTGTTGCTACTGTAATACCTTTGATCTGTAATGTTTAAACCGACTGCGCCAAATGCTGTCTGTTGGGCCAGTGGCGCCAGTGCTCACCGGGGTATCGAAGAGGTGTTAATGCTAAACCATTAGAGTAGTATTTTACTTGCCTTTGCTTTACATTTGATTTTAGTGTTGTGGAAGGGGCTTAGAAAGGAATGATGTAAATGACCAGACTGCAATGTTGTGTAAAATCATTTAAATAATTAATATCAGAGTGGTCAACTATAAAGGATGATAAAATATAATTCCATTCCCATAAAATCATAGAGGCCACAGTGATTGCCTGAAATGTATGTGTACGAACCCACGACCGGCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036982654.1 False 4926 mRNA 0.45 15 63630570 63654636
TU78174 True 1458 lncRNA 0.40 2 63630645 63632138

Neighbor

gene id symbol gene type direction distance location
vox LOC106576785 coding downstream 152 63628235 ~ 63630418 (-)
vent LOC106576918 coding downstream 4693 63624834 ~ 63625877 (-)
blnk LOC106576789 coding downstream 305076 63293360 ~ 63325494 (-)
ccnj ccnj coding downstream 364025 63245450 ~ 63266545 (-)
LOC110526655 LOC106576794 coding downstream 406886 63148644 ~ 63223684 (-)
LOC110526836 LOC106576780 coding upstream 39971 63694607 ~ 63980715 (-)
LOC110526858 LOC106604947 coding upstream 394477 64049113 ~ 64114724 (-)
LOC110526867 LOC100136521 coding upstream 715167 64369803 ~ 64384521 (-)
LOC110526894 LOC106605012 coding upstream 817766 64472402 ~ 64735581 (-)
LOC110526927 LOC106576773 coding upstream 1137724 64792360 ~ 64801660 (-)
G70385 NA non-coding downstream 14309 63616056 ~ 63616261 (-)
G70352 NA non-coding downstream 67662 63562528 ~ 63562908 (-)
G70350 NA non-coding downstream 70936 63559346 ~ 63559634 (-)
G70151 NA non-coding downstream 297753 63332528 ~ 63332817 (-)
G70687 NA non-coding upstream 70537 63725173 ~ 63725436 (-)
G70740 NA non-coding upstream 143025 63797661 ~ 63798209 (-)
G70753 NA non-coding upstream 153184 63807820 ~ 63808085 (-)
G70769 NA non-coding upstream 169631 63824267 ~ 63824474 (-)
G70013 NA other downstream 352818 63277208 ~ 63277752 (-)
G69210 NA other downstream 1212274 62411522 ~ 62418296 (-)
LOC110526417 LOC106576819 other downstream 1648175 61981652 ~ 61983330 (-)
G68736 NA other downstream 1944262 61682278 ~ 61686308 (-)
LOC110526097 LOC106576849 other downstream 3169336 60430184 ~ 60495300 (-)
tjap1 tjap1 other upstream 3164208 66806836 ~ 66883731 (-)
LOC110527436 ppp2r5d other upstream 3340046 66965664 ~ 67010646 (-)
LOC110527584 LOC106576720 other upstream 3731873 67386509 ~ 67389299 (-)
LOC110527687 sncg other upstream 4014953 67669589 ~ 67681775 (-)
LOC110526802 LOC106576784 coding upstream 22413 63654551 ~ 63679213 (-)
G70655 NA non-coding upstream 21899 63654037 ~ 63685264 (-)

Expression


Co-expression Network