LOC110526858 (LOC106604947)


Basic Information

Item Value
gene id LOC110526858
gene name LOC106604947
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 64049113 ~ 64114724 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608051.2
AATGAAAAATGTTTTAAACTAAAGCTATCGCATTATCCAATGGTGGTCTTAATTTTATTAGTTTtttcattatataaatagtggaaataaattaatttgttctGAATGGGCCAAGTTATTGTTGGTGACATTCATCTCGTGCATTGTCTTTAGAGACCCAAAAGCGGCAGTAGGTTTGGTTGGTAGGACCTTTGCGATTCATTGTGCACAAGCGGCTTCTCCTTGTCGACGGGAATTCGCTGACAGAGCACCAGTTGTTTTCGCAGGCAGATGTTGGTGACTGAAGTGGGCTACCGGTTACAACTTTAATTTTAATGCCAAGGAAAATTCGATTACACTTATCGCTAGTATATGCTGAAATGTATGTTATGCGCTCGGACACCAATCACTACAGatagactccactagacacctcCACACCTCCAGCAATGATGGCTGTGCTCCACTCTGGAGTGAGAGTGTTCATCATGCTCCTCATTAGCAGGATGTTAGAGAACTCGCTGCTCAGCGCtgaagtgaaagagggagagattctGCCTCCCACCATTCAGAAGCTGATGAAAGGATACAACAAGTACCTCAGGCCTTTTTTTGACAATGGGCCAGTGACTGTGGGCATGAGTTTGGACATTGCCAGCATTGACACCATATCAGAGATCAACATGGACTACACGGCCACTATCTTCCTGCGTCAGCGCTGGACAGACGAGCGCCTGGTGTTTGAGGGTAACAAGAGCCTGAGTCTGGACGGCAGGCTGGTGGAGCTGCTCTGGGTACCAGACACCTTCATCGTAGACTCCAAAAAGTCCTTCCTCCATGACATCACTGTGGAGAACAGGCTGATCAGGATCTTCCCCAATGGAACGGTGCTCTACGCCCTGAGGATAACCACCACTGTGGCCTGCAACATGGACCTGACCAAGTACCCCATGGACAAGCAGACCTGCACTCTACAACTGGAGAGCTggggctaCAACATCAATGATGTGATGTTCTACTGGACCAGAGGGAATGAGTCGGTCAGTGGTTTGGATACGCTGCGTCTGGCACAGTACACAGTAGAGGACCACTACACATCTGCGTCTGAGGCCATCTATGAAACAGgccACTACCCCAAGCTGATCTTCCACTTTGAGCTGAAGAGAAGCATCCTGTACTTCATCCTGGAGACGTACGTTCCCTCCAGCCTGCTGGTGGTCCTCTCCTGGGTCTCTTTTTGGATCAGCCAGTCTTCCGTCCCCGCAAGGATCTGTATCGGAGTGACCACGGTTCTGACCATGACCACGTTGATGATGGGTGCCAGGACGTCCCTGCCCAACGCCAACTGTTTCATCAAAGCCATCGACGTGTACCTGGGCATCTGCTTCAGCTTCATCTTCGGAGCCCTGATCGAGTACGCCGTGGCCCACTTCTGCACCCTTAACCATCCCGACGCCAACATTGTCATGtaCGGTCACCAGATGGGAGGCTTTGACGAGGAGATGAACGGCATGGTCACCACCATCGCCGCTGAAAACAACAGGGCCAAGAGGCGTAAGGAGAAAGCTGCTGCAGATGAGGCGGCCTTAGCGCCCACAGCTGAGCTGGAACTTTACCCCTCCAGCCCCACTGGCAGTGAGCCCAAGCCTGAGGCCCCTGAGGAGCCCCCCAACCGCTGCCTCATTATCCTGGTCCTCCTCCGCAAGGTCCTGCGCAGAGCTGCAAACTGTTGCCATGTGGAGAATCCCCACTTAATAGACAATTACTCCAGGATGACCTTCCCCCTGTCCTTTGTATTCGTCAACCTCCTCTATTGGACATACTACCTGTACTTATAGGAGTGTGTTTGGGTATGTTTCTGTCTGTGATTCATTCATGTGTTTTTTTTCCTCAAACAAAGCACATTTTTACATTCATGTCATGAGTGAGGCATAGTGTACAGTCAACATCCTTAGGAGAATAAAATGTCCGTGCCACATTTATTATACCTTATTTAGCTCATTACTGCTTTCATAATTGATTGATTTCCATGTTGTTATTTTATTCTCGCCTGCTGTTGGTCATAGACGAGGATCTTAATatgagccagttttctacagcaggaaaatgatcctgcagcaacatgaaatgtgaattattatatggACTATAATTAATTAGTTTtcttgtaggggttgatacatttttcattacgGCAAATCAAGTGTGAAATTTTTAAGTACAAATgtcaaactttagaagcctttttaaaccttgaatactctctctgtctttgtctctcaaaACAATTTAAATTTAAGTTTCTTTACTGGCATGAGAGAAAtgatgtttacattgccaaagaaagtcaaatggataataaacaaaagtgaaataaacattaaaaaatgaccagtaaacattacacacacaaaagttccaaaagaatagagatatttcactctctctttttctctctctctcatccccccccccccccccgctaccATTTCCTGTCTCACTTTATTACCATTATATATCCAGTAGCATTGGCTCTCTCCACCACATTATGGAAATTGACTCTCAAAGGCACCTATAAACCATGTTATTTAATTTGTCATCATACTATTCTGTTTCCAGTATGTTTTACAAGGGACACAACTGCCAGCACCTTAACTGGAATAATGCAGGAATAATGCGGGAATAATGCAGGAATAATGCAATAGAATGGTGTGGATATACAGCACCTAGTGGACGCACGAGTAACAGTGATATTTGCAGTATTGTTTCATTGGAGCTGGTAGATAATATTTTCCACTGTGCTTTGTGATACATGCCGTCTTAATCGTAACGCTAGTACCTTGTATTAGATGTTTTAGGACATTTTAAATAGAGGTGAAACCGCTACTGTATTTTAACAGGACGTCATCATCAATCATCGGTTCATCATCCAGGAAGCTTTGCATGTTGAACTAACATACAAGCTTCCTCCCTCAATCTTTTGTCAATGTCCTGTTGTGTATTGTGAGTGATGATGAATGTCATATATATTGTCATATATAATGTTTTCACATATAAGTAATAACCAAAGGACCAAAGATTTCAATTTGATTTGTAATCCTTCATGGCTCCCTTTAGACTTTGTTGCGTACATTTTGAAATGATTCATCCTTGGTTCCCATTGCTGCGTGGAAAATTCTCCATCGAAGGTAATAGCATGTTATATCAGCATGCAAAAGGAACACAGCAACATTCCATAGtcctgtgcagacagacacagtctCACAATCTATGCATGTTTGTTTATATCCTAAATATTAAGTGCATTTTTCTGTTACAATGCTTTCACCCATTTCCGTAAAGCCATTGACGAGCAGGTTGACCAGAGCATAGAATAACAACATAATGATTTGTTTCATGATTATGATATTGATCATAGTAATGCATTCCTGTAATTAATGTGCACAATGGAAGTTTATATTTGAAATAATTCACCATAATGCAACATTAACATTTGTGTTAATCTCATTTTCAACCATAAGGGTTTTCTTCTAGCCTTCTCTTTTTCTAAAATGCAATCCAATGAATTTGCTCTGCCAAGCATGGTCTTGTTCAGTGCAATAGAATGAAATATCAAATACAGTATCTTTGATAATGAGCTAACTAAACTACTGATAAAAATAGAACAAAAAAATGATTTCGGTTTTGTTTTGCACGGTTACCAATGATAACTTTATTTTGCTTTCTGTTTCTTTGGGGAAGATAAGTATTGATTGTAATGAAATACATATGGAGGCTATCTAAAAATCGAATATTATAGATAACTGCCCTCAATTATACTATCACTGGGGACCAAACTTAGATGTTACTTACATTGAATGTACACTTATATTGAACTTACTAGAGTTTTGATACAAAATGCTTCCCTATGTTGCTAGAGCAACTTTATAAGAACAGTTTGATCTTCTCTTAGAATCTGGTCTATGGTAAAGAAGAAAAATGTGCACTGAACTAATATATATGTAGATCAGTGCTAAATCATACAGTCTATGTTACATGGTCATTGTGTTGGGTCACCTGAATTCCCCTACGCTACTGTAGCCAGTGCCAAAACGGTGCAAAATAATCCACTAAATCAAACCACTAAGGAAATATTTCCTTTGTTTCACGAGAATCCCACAAATTCCCATTTCcaatttccctttactgtggatTCACAACAAATGTGTTTGCTATTTAATAATGTTGTCAAGTGAGCCCCTCTTTTTGGACTCCAGACTCAATCTCTCCTCTCCCAAGACGTAACTACATAATTAGTGATCTGTTTTTCTGCAGTGAATGGACACAGTATTGGATAAATATCCGCAATGGCAGGACACATGATACACAGGACACAAGTCCAGGTACTGCACGGCCAAGCAACCAACCTGACCAATTAGAGTGTACTATACGAAATTCCCTCCCCTACCCACTTGCCTCTGACAGACTGATTGGCCAACGTTGGAGAAGCCTATTTTCCTAACATTTTCAAGGTGATGTTGTGTTATTGACATCAACGTTCTAGGGACATCTTCCTGTAAAATGTGTTCATATTGTAACATTTGAATGTAGACATTTTGTTCGCTGAAATTGTTGTAAATAGATAGTTATACTTTGCATGTTTATTTGATGTTTCAATATTGACTAATGTAATAAAATAAACTGCCTAAAATTGTG

Function

NR:

description
gamma-aminobutyric acid receptor subunit pi-like isoform X1

GO: NA

KEGG:

id description
K05189 GABRP; gamma-aminobutyric acid receptor subunit pi

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608051.2 True 4674 mRNA 0.41 10 64049113 64114724

Neighbor

gene id symbol gene type direction distance location
LOC110526836 LOC106576780 coding downstream 68398 63694607 ~ 63980715 (-)
LOC110526802 LOC106576784 coding downstream 369900 63654551 ~ 63679213 (-)
LOC110532553 LOC106576784 coding downstream 394477 63630570 ~ 63654636 (-)
vox LOC106576785 coding downstream 418695 63628235 ~ 63630418 (-)
vent LOC106576918 coding downstream 423236 63624834 ~ 63625877 (-)
LOC110526867 LOC100136521 coding upstream 255079 64369803 ~ 64384521 (-)
LOC110526894 LOC106605012 coding upstream 357678 64472402 ~ 64735581 (-)
LOC110526927 LOC106576773 coding upstream 677636 64792360 ~ 64801660 (-)
LOC110526944 lrrc27 coding upstream 687668 64802392 ~ 64809629 (-)
LOC110526980 LOC106576770 coding upstream 837118 64951842 ~ 64957672 (-)
G70769 NA non-coding downstream 224639 63824267 ~ 63824474 (-)
G70753 NA non-coding downstream 241028 63807820 ~ 63808085 (-)
G70740 NA non-coding downstream 250904 63797661 ~ 63798209 (-)
G70687 NA non-coding downstream 323677 63725173 ~ 63725436 (-)
G71107 NA non-coding upstream 55887 64170611 ~ 64171010 (-)
G71110 NA non-coding upstream 58401 64173125 ~ 64173350 (-)
G71183 NA non-coding upstream 114094 64228818 ~ 64229027 (-)
G71204 LOC106585892 non-coding upstream 131421 64246145 ~ 64246373 (-)
G71208 NA non-coding upstream 133813 64248537 ~ 64248808 (-)
G70013 NA other downstream 771361 63277208 ~ 63277752 (-)
G69210 NA other downstream 1630817 62411522 ~ 62418296 (-)
LOC110526417 LOC106576819 other downstream 2066718 61981652 ~ 61983330 (-)
G68736 NA other downstream 2362805 61682278 ~ 61686308 (-)
LOC110526097 LOC106576849 other downstream 3587879 60430184 ~ 60495300 (-)
tjap1 tjap1 other upstream 2704120 66806836 ~ 66883731 (-)
LOC110527436 ppp2r5d other upstream 2879958 66965664 ~ 67010646 (-)
LOC110527584 LOC106576720 other upstream 3271785 67386509 ~ 67389299 (-)
LOC110527687 sncg other upstream 3554865 67669589 ~ 67681775 (-)

Expression


Co-expression Network