LOC110526867 (LOC100136521)


Basic Information

Item Value
gene id LOC110526867
gene name LOC100136521
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 64369803 ~ 64384521 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608058.2
ATGGATACTTTAAGAATTGCAGTAAATGGTGTTTCTTATACCGAGGCATCAGAGATCTACAAACCACATGCTGATCCGTTCACTGGTCCAATAACAAATCTTGCACCTTGGAATTTCGCAGTTTTGGCTACCTTGATGTTTGTTataacatctctgtctctctttgaaaATTTCACTGTTATGTTGGCCACTTACAAGTTCAAACAACTGAGACAGCCCTTAAATTATATCATAGTTAATTTATCTCTCGCTGACTTCCTTGTGTCACTCACCGGTGGAACCATAAGTTTTCTAACTAACGCCAAAGGGTATTTTTTCCTTGGAAATTGGGCTTGCGTTTTGGAAGGTTTTGCTGTCACCTATTTCGGGATTGTGGCTATGTGGTCCCTGGCGGTCCTGTCCTTCGAGCGCTACTTTGTGATCTGCCGGCCTCTGGGGAATGTCCGTCTGAGGGGGAAGCATGCAGCGCTGGGCCTGCTGTTCGTCTGGACCTTCTCCTTCATCTGGACTATCCCTCCTGTGTTCGGCTGGTGCAGCTACACCGTCAGTAAGATCGGCACCACCTGCGAGCCCAATTGGTATTCCAACAACATTTGGAATCACACCTACATCATCACCTTCTTTGTGACCTGCTTCATAATGCCCTTGGGGGTGATCATCTACTGCTATGGGAAGCTCCTACAGAAGCTGAGGAAGGTGTCCCATGGCAGGCTGGGTAATGCCAAGAAACCGGAGCGCCAGGTGAGCcgcatggtggtggtgatgatcgTCGCTTACCTGGTGGGCTGGACACCCTACGCAGCCTTCTCCATCATTGTCACAGCCTGTCCCACCATCTACCTGGACCCCAGACTGGCTGCCGCGCCCGCTTTCTTCTCCAAGACGGCCGCAGTCTACAACCCAGTCATCTACGTCTTCATGAACAAACAGTTCAGGAAGTGTCTGATCCAGCTCTTTACCGGCAAGCCTGCGCCAGAGAACATGAACGCAACATCGCAGCGACCGGGAATGACGGGGGAGAGCTGCACGGGGGGCGAGATGTCAGCCATCGCCGCCCGCATCCCGGTCTGCGGCAATGCTCAGCCTAAGAATGAGGAGGAGTCCCCGAGCGAGTGCAGCTCCGTCGCCCAGCTACCGATCCCAGAGAACAAAGTCTGTCCCATGTAGGCCAACAGAAGACTCCCCTCCCCCCCACCTCCAGTCCTCACTGCCTTTACATCCTCCCTTTCCATTCTTATACAGATGCATCTTCTCTTACTCACAAACTTCTTGTGATAATTGTTAGTTTAAAGATGCCAGCTGTAACCACAAAGGTTCTCTGGTTAACTTTGTATGTATTAGTAAAAATAGAGGAAACATGTCCGAAACCGGAGCACAAAAGAGGGACATAATACTTTAATGTATGGCAAGCAGACAGACTACCCAGACTGCCTCTCTCTGCTGGCTTTCATCTGAGCCTAAGCAGGGTCAGGCCTGATTGATGTCTAGGTAGGAGACCAGATGCTGTTGGAAGTGGTGTTAGAGGGCCAGTGAGAGGCATTCTTCCCGCCTCAATACCTTAGGCTGTGATGGGGAAACTGCCACCCAAAGGGTGCCCTTAAACCAAGGTCCTGACTCTTATAcaatcatggccacctaatcctCCCGTTAGCCCTCTCTCCACTACAATACAAGATTCTTTCAGCACGAAAACCGCTAATTCTTTAAGTCCCCTCCATCATTACTTATCATTATTATGACAAGAACATTAAATGCTTGTTGACAGTGATTAAATATTAACAATTCAGCAAGCTAGAAATCGTGGCTGTAAATGTAGTATTTGCTTGTCAGATTCCCTCCCACTTTACTCGAGTCGTGAGTTATTTTTGTTCTGGTAGGCCTAATTATTATCAGCTACCTAACAGTTTGTTGTATTAGAGGGGGCCCGTACACACTCAGCTGGTACAACTGATGTACTCTTTGTTGTATCACAACTGCTGTGCCAAATGCGCTGCACATCAGTTGTACAACTTGAGTGTGCACCACCTGCATTATCACGGTTGTCAGAGGGGGCAGGTGCCGAGTCCTACTCTTACCCAGAAGAGCCAGACTTAGAAGATGAGAGCTGGCTACCGTCAGAATGCTTTAATCTGTAGCTCTTTTCCCCTTTGAAGCCCCTGTGATGGCAACTGCTGAGAGGGTATTGCTTTCTATGTTTCTGTACATTTTTCGTTCTCTTCTTGAGCAGATTCGATGGCGAAATTTCCGTTCAAAACAAAGACAGTTAATGAGGCTTGGTGCAGCTGGCCCCCTGCTGGCTCTACTGGGACACTGAGAGACTGTATATTTATGATGAGTCCACAAAAAAATCCTTTCTTTCTTCAACACACTGTGACTGTACATTGTATGTCGAGAAATAATGTATATGGGACTCTGTGAAGGGGTCCAGTGAATCCGAGTAGCTCTGCTCATCATTAGCGCCGACAAATATCGTTGCATTGTACACAAAAGCATTGTACAATGAGGATCACATCACAAAGCATGGGTCTACAGTCAGCAATATTGTAGCACAAGATACTGTAACACTTGACTTTAGAACTGGTTACAGTAGATGTAGTAATACGTTTCAGGTGTATtcaaacttatgtaaatgtatctTGACAACGTCTCTTGTTCACCATTCTGTGCAGCACCATCATTGAATAAGTtgaacagtaataataataatgtgataATATCCATATGCCGGGTACAGCAGAGACCCTGATCATATTGCATGAGTCAGTCTCAACAAATACATAATGTACAAATTCATCTCGCATTGCCACACTTCATGGTCTTGTTCACTGGCCTATTGGAACGAATGTAACAAAGCCGGAAAATGAAGGTTTGTATGAATAAGGGCTGAGtctccacaaggatagtaaaacgaaaacacacacacacacacacacacacaaatgcacacacaaactGTAGGCCTATACACGTTGCACACACAAAAGCAATATGACAATGTTCCGTTTTTTTCAGGATACATGAGCAGGTAGTAGGGGTGGTAACTCGCCTTCGAGAATACAGGGAGAGGAACATTTTTAAGAACACATCAGAGATTTGGACACGAATATGACTGATATACTGATAAGTTGAAGAAGCAGTCCAAATGTGGACAAATAAgtataatttatatatttttctcattttTGCCCGGACTATCATGCACCTCCGACAGTGTTTGTTGTATTGTACTTACAGTGGCACGTTGAGAATTGTTCTGCTGTGTTTTTGGTGTAACTATTTCGTCATGAGTTGCAGGTCATGCATGCTAGTTGTTAGAAAAACTAATGTCTGTACtggattaaaatatatattttt
>TU78947
AAGAAACCGGAGCGCCAGGTGAGCcgcatggtggtggtgatgatcgTCGCTTACCTGGTGGGCTGGACACCCTACGCAGCCTTCTCCATCATTGTCACAGCCTGTCCCACCATCTACCTGGACCCCAGACTGGCTGCCGCGCCCGCTTTCTTCTCCAAGACGGCCGCAGTCTACAACCCAGTCATCTACGTCTTCATGAACAAACAGGAAGTGTCTGATCCAGCTCTTTACCGGCAAGCCTGCGCCAGAGAACATGAACGCAACATCGCAGCGACCGGGAATGACGGGGGAGAGCTGCACGGGGGGCGAGATGTCAGCCATCGCCGCCCGCATCCCGGTCTGCGGCAATGCTCAGCCTAAGAATGAGGAGGAGTCCCCGAGCGAGTGCAGCTCCGTCGCCCAGCTACCGATCCCAGAGAACAAAGTCTGTCCCATGTAGGCCAACAGAAGACTCCCCTCCCCCCCACCTCCAGTCCTCACTGCCTTTACATCCTCCCTTTCCATTCTTATACAGATGCATCTTCTCTTACTCACAAACTTCTTGTGATAATTGTTAGTTTAAAGATGCCAGCTGTAACCACAAAGGTTCTCTGGTTAACTTTGTATGTATTAGTAAAAATAGAGGAAACATGTCCGAAACCGGAGCACAAAAGAGGGACATAATACTTTAATGTATGGCAAGCAGACAGACTACCCAGACTGCCTCTCTCTGCTGGCTTTCATCTGAGCCTAAGCAGGGTCAGGCCTGATTGATGTCTAGGTAGGAGACCAGATGCTGTTGGAAGTGGTGTTAGAGGGCCAGTGAGAGGCATTCTTCCCGCCTCAATACCTTAGGCTGTGATGGGGAAACTGCCACCCAAAGGGTGCCCTTAAACCAAGGTCCTGACTCTTATAcaatcatggccacctaatcctCCCGTTAGCCCTCTCTCCACTACAATACAAGATTCTTTCAGCACGAAAACCGCTAATTCTTTAAGTCCCCTCCATCATTACTTATCATTATTATGACAAGAACATTAAATGCTTGTTGACAGTGATTAAATATTAACAATTCAGCAAGCTAGAAATCGTGGCTGTAAATGTAGTATTTGCTTGTCAGATTCCCTCCCACTTTACTCGAGTCGTGAGTTATTTTTGTTCTGGTAGGCCTAATTATTATCAGCTACCTAACAGTTTGTTGTATTAGAGGGGGCCCGTACACACTCAGCTGGTACAACTGATGTACTCTTTGTTGTATCACAACTGCTGTGCCAAATGCGCTGCACATCAGTTGTACAACTTGAGTGTGCACCACCTGCATTATCACGGTTGCCAGACTTAGAAGATGAGAGCTGGCTACCGTCAGAATGCTTTAATCTGTAGCTCTTTTCCCCTTTGAAGCCCCTGTGATGGCAACTGCTGAGAGGGTATTGCTTTCTATGTTTCTGTACATTTTTCGTTCTCTTCTTGAGCAGATTCGATGGCGAAATTTCCGTTCAAAACAAAGACAGTTAATGAGGCTTGGTGCAGCTGGCCCCCTGCTGGCTCTACTGGGACACTGAGAGACTGTATATTTATGATGAGTCCACAAAAAAATCCTTTCTTTCTTCAACACACTGTGACTGTACATTGTATGTCGAGAAATAATGTATATGGGACTCTGTGAAGGGGTCCAGTGAATCCGAGTAGCTCTGCTCATCATTAGCGCCGACAAATATCGTTGCATTGTACACAAAAGCATTGTACAATGAGGATCACATCACAAAGCATGGGTCTACAGTCAGCAATATTGTAGCACAAGATACTGTAACACTTGACTTTAGAACTGGTTACAGTAGATGTAGTAATACGTTTCAGGTGTATtcaaacttatgtaaatgtatctTGACAACGTCTCTTGTTCACCATTCTGTGCAGCACCATCATTGAATAAGTtgaacagtaataataataatgtgataATATCCATATGCCGGGTACAGCAGAGACCCTGATCATATTGCATGAGTCAGTCTCAACAAATACATAATGTACAAATTCATCTCGCATTGCCACACTTCATGGTCTTGTTCACTGGCCTATTGGAACGAATGTAACAAAGCCGGAAAATGAAGGTTTGTATGAATAAGGGCTGAGtctccacaaggatagtaaaacgaaaacacacacacacacacacacacacaaatgcacacacaaactGTAGGCCTATACACGTTGCACACACAAAAGCAATATGACAATGTTCCGTTTTTTTCAGGATACATGAGCAGGTAGTAGGGGTGGTAACTCGCCTTCGAGAATACAGGGAGAGGAACATTTTTAAGAACACATCAGAGATTTGGACACGAATATGACTGATATACTGATAAGTTGAAGAAGCAGTCCAAATGTGGACAAATAAgtataatttatatatttttctcattttTGCCCGGACTATCATGCACCTCCGACAGTGTTTGTTGTATTGTACTTACAGTGGCACGTTGAGAATTGTTCT

Function

NR:

description
PREDICTED: vertebrate ancient opsin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608058.2 False 3354 mRNA 0.45 5 64369803 64384521
TU78947 True 2485 TUCP 0.45 3 64369902 64381356

Neighbor

gene id symbol gene type direction distance location
LOC110526858 LOC106604947 coding downstream 255079 64049113 ~ 64114724 (-)
LOC110526836 LOC106576780 coding downstream 389088 63694607 ~ 63980715 (-)
LOC110526802 LOC106576784 coding downstream 690590 63654551 ~ 63679213 (-)
LOC110532553 LOC106576784 coding downstream 715167 63630570 ~ 63654636 (-)
vox LOC106576785 coding downstream 739385 63628235 ~ 63630418 (-)
LOC110526894 LOC106605012 coding upstream 87881 64472402 ~ 64735581 (-)
LOC110526927 LOC106576773 coding upstream 407839 64792360 ~ 64801660 (-)
LOC110526944 lrrc27 coding upstream 417871 64802392 ~ 64809629 (-)
LOC110526980 LOC106576770 coding upstream 567321 64951842 ~ 64957672 (-)
LOC118964437 NA coding upstream 678759 65063280 ~ 65064797 (-)
G71208 NA non-coding downstream 120995 64248537 ~ 64248808 (-)
G71204 LOC106585892 non-coding downstream 123430 64246145 ~ 64246373 (-)
G71183 NA non-coding downstream 140776 64228818 ~ 64229027 (-)
G71110 NA non-coding downstream 196453 64173125 ~ 64173350 (-)
G71107 NA non-coding downstream 198793 64170611 ~ 64171010 (-)
G71450 NA non-coding upstream 57451 64441972 ~ 64442508 (-)
G72176 NA non-coding upstream 154014 64538535 ~ 64539137 (-)
G72236 NA non-coding upstream 259963 64644484 ~ 64647187 (-)
G72237 NA non-coding upstream 260531 64645052 ~ 64647635 (-)
G70013 NA other downstream 1092051 63277208 ~ 63277752 (-)
G69210 NA other downstream 1951507 62411522 ~ 62418296 (-)
LOC110526417 LOC106576819 other downstream 2387408 61981652 ~ 61983330 (-)
G68736 NA other downstream 2683495 61682278 ~ 61686308 (-)
LOC110526097 LOC106576849 other downstream 3908569 60430184 ~ 60495300 (-)
tjap1 tjap1 other upstream 2434323 66806836 ~ 66883731 (-)
LOC110527436 ppp2r5d other upstream 2610161 66965664 ~ 67010646 (-)
LOC110527584 LOC106576720 other upstream 3001988 67386509 ~ 67389299 (-)
LOC110527687 sncg other upstream 3285068 67669589 ~ 67681775 (-)
sdhaf4 LOC106576700 other upstream 3773440 68157900 ~ 68162024 (-)

Expression


Co-expression Network