LOC110526877 (LOC106576777)


Basic Information

Item Value
gene id LOC110526877
gene name LOC106576777
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 64468523 ~ 64471084 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608067.2
CGCTTCACTCACACCATAGCTCGAGTCAATTTACGAAGAAAGCCGACCGTTATGGTCACCATCAAAACCACAAAAAAAACGAAATCAGATCCTCTAACTTCCGAGTGGATTCTCGTTGTGGACGCATGCGGCAAGCTCACTATTGACAGTCTGAATTGGAGAGAAATTTTCGATCAAACTATTGCCCGACAACGCAAGAGAACTTCTCTCCTAAATAAGTGTTTTTGTTTTCGGAAGTGTTCAGTGGCTGCGGTATCCAGGATATACGTCTGAAGCACCTGTAGTGGCCTCTGCTTATCAACCAGTTCAGCACCTTTATATTCCTTTCCTCGgtttattgttatttttactcGAGCGAATTTGGTGGTTCATGCTCTCCAATGTTAGCTGTTGGGCAGATGGATGCTAACCGGCAGAGTGCTTTCGTCCTAGGCAGTACACCGCTGGCAGCATTGCACAACATGACCGAGATGAAGACGTCTTTATTTCCCTACACTTTGCAGAATCATGCGGGCTTCAAGGCGCATTCTCTTACTCATTTGAACTCACAGCTTGCCCTGGGGACACCACATGGAATTAGCGATATCTTGGGTAGACCTATCAACTCAGCTGGACAGCTGCTCTCTGGCTTTCCAAGGATAAACGGCTTGGCCACCACCGCAGGAATGTACTTTAACCCAGCGGCCGTTTCTCGGTACCCGAAGCCCCTGACGGAGCTCCCAGGGAGAGCACCCATATTCTGGCCTGGAGTGATGCAGAGCTCCCCTTGGAGGGATCCTCGAGTGCCCTGTCCTAACTCTTCAATCTTTTTTGTAGCTCAACAAAACATGATGCTCGACAAGGATGGCAAGAAAAAACACTCCAGACCAACTTTTTCTGGACAGCAAATTTTTGCATTGGAGAAAACCTTTGAACAGACGAAATACCTTGCTGGCCCAGAAAGAGCTCGACTGGCTTACTCTTTGGGAATGACTGAAAGTCAAGTCAAGGTATGGTTTCAAAACAGGAGAACCAAATGGCGGAAGAGACACGCAGCGGAAATGGCAACAGCCAAAAAGAAACATGACTCTGAAACTGAGAAGATGAAGGAAAGCTCGGACAATGAGGACGACGACGAGTACAACAAACCTCTGGACCCAAATTCGGATGACGAAAAAATCACGAGACTTCTGAAAAAGCACAAGGCTACAAACCTTTCCTTGATCAGTCCATGCAGCAATAGCTCGGACACCTTGTGATGACATTGAGAACTTGTCGAGAAAAGACTCAAACACTCCACGATGCTTCTAAAGCTAATTTAACCAGGGTATAAATTGTTCAAAAGGAGAGAAAGGGCGCTGATGGGTGGTATGAATGATTTATGTTGTACAGACGAAAATGTgagatgtatatattttttactgaGTAAGTTATGTTATTAAACCAATGTAAACAAGAAATGGCAGGCCTTTCCCGCAAATCCCGATAAGCATATACCTTCTCAATATTGTAGCTTAATTTTGTTATATATTGCAGAATAATGTCGCCCATCTCTCCACCTTTACCATTATAAATTCAAGGTACACAATGTATGAATGCAAACGTTGTAAATTATGTAAAAAGCTTGTTTTAACGATCTAAACTGTTTTATTTTATAATTTGAAGGAATTTGTTTCACCTCATCAAACAAAAATAGAGAACTGGATAATCGTTTGTTGGAATAAGAGAGTATCATTGCTTCCGCGaagatggaagaaaaaaaaactttgtATTATGAATAAATTATTTAACAAGC
>XM_021608072.2
GCTTCACTCACACCATAGCTCGAGTCAATTTACGAAGAAAGCCGACCGTTATGGTCACCATCAAAACCACAAAAAAAACGAAATCAGATCCTCTAACTTCCGAGTGGATTCTCGTTGTGGACGCATGCGGCAAGCTCACTATTGACAGTCTGAATTGGAGAGAAATTTTCGATCAAACTATTGCCCGACAACGCAAGAGAACTTCTCTCCTAAATAAGTGTTTTTGTTTTCGGAAGTGTTCAGTGGCTGCGGTATCCAGGATATACGTCTGAAGCACCTGTAGTGGCCTCTGCTTATCAACCAGTTCAGCACCTTTATATTCCTTTCCTCGgtttattgttatttttactcGAGCGAATTTGGTGGTTCATGCTCTCCAATGTTAGCTGTTGGGCAGATGGATGCTAACCGGCAGAGTGCTTTCGTCCTAGGCAGTACACCGCTGGCAGCATTGCACAACATGACCGAGATGAAGACGTCTTTATTTCCCTACACTTTGCAGAATCATGCGGGCTTCAAGGCGCATTCTCTTACTCATTTGAACTCACAGCTTGCCCTGGGGACACCACATGGAATTAGCGATATCTTGGGTAGACCTATCAACTCAGCTGGACAGCTGCTCTCTGGCTTTCCAAGGATAAACGGCTTGGCCACCACCGCAGGAATGTACTTTAACCCAGCGGCCGTTTCTCGGTACCCGAAGCCCCTGACGGAGCTCCCAGGGAGAGCACCCATATTCTGGCCTGGAGTGATGCAGAGCTCCCCTTGGAGGGATCCTCGAGTGCCCTGTCCTACTCAACAAAACATGATGCTCGACAAGGATGGCAAGAAAAAACACTCCAGACCAACTTTTTCTGGACAGCAAATTTTTGCATTGGAGAAAACCTTTGAACAGACGAAATACCTTGCTGGCCCAGAAAGAGCTCGACTGGCTTACTCTTTGGGAATGACTGAAAGTCAAGTCAAGGTATGGTTTCAAAACAGGAGAACCAAATGGCGGAAGAGACACGCAGCGGAAATGGCAACAGCCAAAAAGAAACATGACTCTGAAACTGAGAAGATGAAGGAAAGCTCGGACAATGAGGACGACGACGAGTACAACAAACCTCTGGACCCAAATTCGGATGACGAAAAAATCACGAGACTTCTGAAAAAGCACAAGGCTACAAACCTTTCCTTGATCAGTCCATGCAGCAATAGCTCGGACACCTTGTGATGACATTGAGAACTTGTCGAGAAAAGACTCAAACACTCCACGATGCTTCTAAAGCTAATTTAACCAGGGTATAAATTGTTCAAAAGGAGAGAAAGGGCGCTGATGGGTGGTATGAATGATTTATGTTGTACAGACGAAAATGTgagatgtatatattttttactgaGTAAGTTATGTTATTAAACCAATGTAAACAAGAAATGGCAGGCCTTTCCCGCAAATCCCGATAAGCATATACCTTCTCAATATTGTAGCTTAATTTTGTTATATATTGCAGAATAATGTCGCCCATCTCTCCACCTTTACCATTATAAATTCAAGGTACACAATGTATGAATGCAAACGTTGTAAATTATGTAAAAAGCTTGTTTTAACGATCTAAACTGTTTTATTTTATAATTTGAAGGAATTTGTTTCACCTCATCAAACAAAAATAGAGAACTGGATAATCGTTTGTTGGAATAAGAGAGTATCATTGCTTCCGCGaagatggaagaaaaaaaaactttgtATTATGAATAAATTATTTAACAAGC

Function

NR:

description
PREDICTED: homeobox protein Nkx-6.2-like isoform X2

GO:

id name namespace
GO:0021522 spinal cord motor neuron differentiation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003309 type B pancreatic cell differentiation biological_process
GO:0003310 pancreatic A cell differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
K09350 NKX6-2; homeobox protein Nkx-6.2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608067.2 False 1774 mRNA 0.43 3 64468523 64471084
XM_021608072.2 True 1752 mRNA 0.43 3 64468524 64471084

Neighbor

gene id symbol gene type direction distance location
LOC118965254 NA coding upstream 470222 63980371 ~ 63998531 (+)
LOC110526795 NA coding upstream 847094 63620237 ~ 63621429 (+)
LOC110526778 LOC106576786 coding upstream 869717 63565503 ~ 63598806 (+)
LOC110526770 LOC106576788 coding upstream 969073 63323902 ~ 63499450 (+)
LOC110526727 LOC106576790 coding upstream 1178622 63283327 ~ 63292127 (+)
LOC110526912 LOC106576775 coding downstream 302831 64773915 ~ 64783737 (+)
LOC110526969 stk32c coding downstream 338171 64809255 ~ 64946164 (+)
LOC110526991 LOC106576769 coding downstream 501310 64972394 ~ 64984304 (+)
LOC110532561 LOC106576767 coding downstream 521986 64993070 ~ 65016685 (+)
LOC110527002 rhoq coding downstream 550119 65021203 ~ 65041610 (+)
G71472 NA non-coding upstream 8154 64460165 ~ 64460369 (+)
G71468 NA non-coding upstream 9613 64458532 ~ 64458910 (+)
G71464 NA non-coding upstream 12390 64455663 ~ 64456133 (+)
G71456 NA non-coding upstream 20829 64447482 ~ 64447694 (+)
G71449 NA non-coding upstream 26053 64441931 ~ 64442470 (+)
G71779 NA non-coding downstream 434915 64905999 ~ 64932480 (+)
G71653 NA non-coding downstream 472250 64943334 ~ 64985289 (+)
G71654 NA non-coding downstream 516144 64987228 ~ 64991904 (+)
G71826 NA non-coding downstream 533201 65004285 ~ 65037581 (+)
LOC110527013 socs5 non-coding downstream 597300 65068088 ~ 65120931 (+)
G70011 NA other upstream 1193227 63274963 ~ 63275296 (+)
G67930 mcmbp other upstream 2735135 61729765 ~ 61733388 (+)
G67806 LOC106581772 other upstream 3153271 61314874 ~ 61315252 (+)
G66188 NA other upstream 4526459 59941486 ~ 59942064 (+)
G65442 NA other upstream 5143394 59324636 ~ 59325129 (+)
LOC110527164 LOC106576754 other downstream 1444651 65915581 ~ 65922285 (+)
G73515 NA other downstream 1816595 66287679 ~ 66288469 (+)
LOC118965274 LOC106576739 other downstream 1949411 66417495 ~ 66424081 (+)
G74067 LOC106576735 other downstream 2285123 66756207 ~ 66758984 (+)

Expression


Co-expression Network