LOC110526912 (LOC106576775)


Basic Information

Item Value
gene id LOC110526912
gene name LOC106576775
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 64773915 ~ 64783737 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608102.2
TCAAATATATGGAAAATGTCTATACAGTTCAGCTGTTTTAAAAATATTTCTCTGCTATTAAGATTTTTTATTGTACGAACATTTGGCTTGAGACAATTCTAAACTCTACTGCTTGGGATCGGGGCAAGTCTAGGAGCAGTCTCGCACACTACCTACGAAGGTGACATACGAGATATAAAAAatgtatactacagtaatatgtgTACACGCAGGTATTAAACTCTCTTGTAAATGTACGTAGTGTAAATTACCCCTTTAGAAATTTGAAATTGCTAAGGGATGCATTTGCTCAATTGTTTGATCTTATTTGCAGTGAGGTTTTAAGTCATGAGTCAACTACCTAGATTCTGGAACCTGGGATGGTCTTCCTTCATTGACTGGTGGAGTAGTCAGAGTGCTTCAGAGCAAGACTGTGTGACAACTACAGGACCTTCTCAACCCTATGGTCAGCAGCACCTGAATGAACCTCTTCTGGACCACAGAGAGGGTCAGCTCTTCCTGACCGAGGCTTTTAAAGTCATCCTTGAGGAGGTGCTATGTAAGGGCATAGACGTCAACGAGAAGGTTTGTGAGTGGCGCGAGCCAGAGGAGTTGGCTACTCTGCTAGATCTGGAGCTGAGAGAGTATGGGGAGCAACAGCACCAGCTGCTGCAGAGAGTACGGGATGTGGCCAAGTACAGCGTCAAGACCAATCATCCGCGGTTCTTCAATCAGCTCTTTGCAGGGGTGGACTACCATGCCTTGACAGGACGATTCCTTACGGAGGCTCTTAACACTAGCCAGTATACCTATGAAGTAGCGCCAGTGTTCGTCCTGATGGAAGACGAGGTACTCTCCAAGCTACGTTCTCTAGTTGGGTGGGCACAGGGAGATGGCATCTTCTGCCCAGGCGGTACCATGTCTAACATGTATGCCATGAACCTAGCACGCTATCGGGCCTTCCCAGAAGTTAAACTTAAGGGGCAGTGGGCCCTCCCTCGACTGGCTGTCTTTACATCTCAAGAGAGCCATTACTCTGTGATGAAAGCAGCGGCCTTTCAGGGCATTGGGACAGAGAACGTGTTTAAGGTCAACGTGGATGATAGGGGTTGCATGATTACAGATGACCTTAGTGAGAAAATTGAGCTGGCGAAATCTCAAGGGGCAGTACCATTCCTTGTCCACGCCACGTCAGGAACGACTGTACAAGGTGCCTTCGACCCCCTGGAGCCCATCGCTGACATCTGTGACAGACAGGGGTTATGGATGCATGTTGATGCAGCCTGGGGAGGGAGTGTTCTCTTCTCAAAGGAACACAGACATCTCATGAGAGGAGTTGAGAGAGCCGATTCAGTAACTTGGAATCCACACAAGATGATGCTGACTGGCTTGCAGTGTTCAGCCGTTCTGCTCAAGGACACCACGGACCTGTTGAAACGTTGCCACAGTGCAGATGCAACATACCTCTTCCAGCAGGACAAGTTCTATGACATGAGTCTGGACACAGGGGACAAGTCGATACAGTGCGGCCGTAAGGTTGACTGCCTGAAGCTGTGGTTGATGTGGAAAGCTGTGGGGTCACAAGGCTTGGAAGAGCGTGTGGACAGGGCTTTCGCCCATACAAGATATCTGGTGGAGGAGATGATGAAAAGAGAGGGCTTTCAACTTATAGGGAAGCCTGAGTTTGTGAACGTGTGTTTCTGGTTCATACCACCCAGTCTGAGGGGAAAGGAGAACAGTCCAGACTACCAGGACAGATTGTCAAAGGTTGGTGGCTCCAGTGATAAAGGAGCGTATGATTAAGCAGGGTACTATGATGGTGGGCTACCAGCCTCTGGGTGGACGAGTCAACTTCTTCCGCATGATTGTCATCTCTCCGCAGCTCTCCTACCAAGATATGACCTTCTTTCTGGATGAGATTGAGAGGCTAGGGAATAATCTATGA
>XM_021608095.2
CTCTCTTGTAAATGTACGTAGTGTAAATTACCCCTTTAGAAATTTGAAATTGCTAAGGGATGCATTTGCTCAATTGTTTGATCTTATTTGCAGTGAGGTTTTAAGTCATGAGTCAACTACCTAGATTCTGGAACCTGGGATGGTCTTCCTTCATTGACTGGTGGAGTAGTCAGAGTGCTTCAGAGCAAGACTGTGTGACAACTACAGGACCTTCTCAACCCTATGGTCAGCAGCACCTGAATGAACCTCTTCTGGACCACAGAGAGGGTCAGCTCTTCCTGACCGAGGCTTTTAAAGTCATCCTTGAGGAGGTGCTATGTAAGGGCATAGACGTCAACGAGAAGGTTTGTGAGTGGCGCGAGCCAGAGGAGTTGGCTACTCTGCTAGATCTGGAGCTGAGAGAGTATGGGGAGCAACAGCACCAGCTGCTGCAGAGAGTACGGGATGTGGCCAAGTACAGCGTCAAGACCAATCATCCGCGGTTCTTCAATCAGCTCTTTGCAGGGGTGGACTACCATGCCTTGACAGGACGATTCCTTACGGAGGCTCTTAACACTAGCCAGTATACCTATGAAGTAGCGCCAGTGTTCGTCCTGATGGAAGACGAGGTACTCTCCAAGCTACGTTCTCTAGTTGGGTGGGCACAGGGAGATGGCATCTTCTGCCCAGGCGGTACCATGTCTAACATGTATGCCATGAACCTAGCACGCTATCGGGCCTTCCCAGAAGTTAAACTTAAGGGGCAGTGGGCCCTCCCTCGACTGGCTGTCTTTACATCTCAAGAGAGCCATTACTCTGTGATGAAAGCAGCGGCCTTTCAGGGCATTGGGACAGAGAACGTGTTTAAGGTCAACGTGGATGATAGGGGTTGCATGATTACAGATGACCTTAGTGAGAAAATTGAGCTGGCGAAATCTCAAGGGGCAGTACCATTCCTTGTCCACGCCACGTCAGGAACGACTGTACAAGGTGCCTTCGACCCCCTGGAGCCCATCGCTGACATCTGTGACAGACAGGGGTTATGGATGCATGTTGATGCAGCCTGGGGAGGGAGTGTTCTCTTCTCAAAGGAACACAGACATCTCATGAGAGGAGTTGAGAGAGCCGATTCAGTAACTTGGAATCCACACAAGATGATGCTGACTGGCTTGCAGTGTTCAGCCGTTCTGCTCAAGGACACCACGGACCTGTTGAAACGTTGCCACAGTGCAGATGCAACATACCTCTTCCAGCAGGACAAGTTCTATGACATGAGTCTGGACACAGGGGACAAGTCGATACAGTGCGGCCGTAAGGTTGACTGCCTGAAGCTGTGGTTGATGTGGAAAGCTGTGGGGTCACAAGGCTTGGAAGAGCGTGTGGACAGGGCTTTCGCCCATACAAGATATCTGGTGGAGGAGATGATGAAAAGAGAGGGCTTTCAACTTATAGGGAAGCCTGAGTTTGTGAACGTGTGTTTCTGGTTCATACCACCCAGTCTGAGGGGAAAGGAGAACAGTCCAGACTACCAGGACAGATTGTCAAAGGTGGCTCCAGTGATAAAGGAGCGTATGATTAAGCAGGGTACTATGATGGTGGGCTACCAGCCTCTGGGTGGACGAGTCAACTTCTTCCGCATGATTGTCATCTCTCCGCAGCTCTCCTACCAAGATATGACCTTCTTTCTGGATGAGATTGAGAGGCTAGGGAATAATCTATGATAGTCATTCTAGTTATCGCCTTGCATCTCCATTTATGTCACTGACTCCTCTGGCTCCCAGAATCTGTTTTCTAACAATAATATTACTTGTTTTCTACAGTTTTGGGGGAAGCTActttgaaaatatagtttactaaGCTACTAATTACTTCACAATGGAAGAAGTTAAGATACCCTTAAGAAAAACAATTTGCTTAACTAAAGTTACATTGAAAAAGTAGCTCACTACATACAACTTTGTgataaagtatatatatatatatatattgtatggtCTTTATGTATTATTTGGTTGTAGAACATGATGTAGGAGGTCCTTCTGAAAAATACCCATGACAGATGCCAAGGGAAGCCTGATCAATGCCATGAAGcattgagacagacagaggagcccATGAGCTGTGGGCTGCAGCGGAACCATGTCAACATCCTGGACACGGTTGCATGGACGAAGTCGCCCCTGCATAAACAGTGAACTTGAGTGACCCAGCGTGCATGGATTAAAGATGGCCTTGTCTGAGAAGGGTGGATGCTTA

Function

NR:

description
cysteine sulfinic acid decarboxylase-like isoform X1

GO: NA

KEGG:

id description
K18966 GADL1, CSAD; sulfinoalanine decarboxylase / aspartate 1-decarboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608102.2 False 1924 mRNA 0.48 14 64773915 64783202
XM_021608095.2 True 2235 mRNA 0.47 14 64774135 64783737

Neighbor

gene id symbol gene type direction distance location
LOC110526877 LOC106576777 coding upstream 302831 64468523 ~ 64471084 (+)
LOC118965254 NA coding upstream 775614 63980371 ~ 63998531 (+)
LOC110526795 NA coding upstream 1152486 63620237 ~ 63621429 (+)
LOC110526778 LOC106576786 coding upstream 1175109 63565503 ~ 63598806 (+)
LOC110526770 LOC106576788 coding upstream 1274465 63323902 ~ 63499450 (+)
LOC110526969 stk32c coding downstream 25518 64809255 ~ 64946164 (+)
LOC110526991 LOC106576769 coding downstream 188657 64972394 ~ 64984304 (+)
LOC110532561 LOC106576767 coding downstream 209333 64993070 ~ 65016685 (+)
LOC110527002 rhoq coding downstream 237466 65021203 ~ 65041610 (+)
LOC110527013 socs5 coding downstream 284351 65068088 ~ 65120931 (+)
G71472 NA non-coding upstream 313546 64460165 ~ 64460369 (+)
G71468 NA non-coding upstream 315005 64458532 ~ 64458910 (+)
G71464 NA non-coding upstream 317782 64455663 ~ 64456133 (+)
G71456 NA non-coding upstream 326221 64447482 ~ 64447694 (+)
G71449 NA non-coding upstream 331445 64441931 ~ 64442470 (+)
G71779 NA non-coding downstream 122262 64905999 ~ 64932480 (+)
G71653 NA non-coding downstream 159597 64943334 ~ 64985289 (+)
G71654 NA non-coding downstream 203491 64987228 ~ 64991904 (+)
G71826 NA non-coding downstream 220548 65004285 ~ 65037581 (+)
G70011 NA other upstream 1498619 63274963 ~ 63275296 (+)
G67930 mcmbp other upstream 3040527 61729765 ~ 61733388 (+)
G67806 LOC106581772 other upstream 3458663 61314874 ~ 61315252 (+)
G66188 NA other upstream 4831851 59941486 ~ 59942064 (+)
G65442 NA other upstream 5448786 59324636 ~ 59325129 (+)
LOC110527164 LOC106576754 other downstream 1131998 65915581 ~ 65922285 (+)
G73515 NA other downstream 1503942 66287679 ~ 66288469 (+)
LOC118965274 LOC106576739 other downstream 1636758 66417495 ~ 66424081 (+)
G74067 LOC106576735 other downstream 1972470 66756207 ~ 66758984 (+)

Expression


Co-expression Network