LOC110526927 (LOC106576773)


Basic Information

Item Value
gene id LOC110526927
gene name LOC106576773
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 64792360 ~ 64801660 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608109.2
TCTGAAATGGTGGCTACATGAGCCAACAATAAACGGAAAGCCAAACGGTATAATTTTAAGCAAGACAGAGGGGCAACCTCAAAATATTTATATCATCTGTCTTTGTGTGATGTCACCAGTGGCAGAACTGTTGTAATTGACTTGGTGGGGGGTGATGGCGTCATTTCGTGCCCTGGTGTACCCTCCCGTGCTCGAAAGTAGAAGGGAGAAGCATCTTTAGCAGAGGCGATCGTGGCTCCCAGGGCCGGGCTCGAGTACCGCAAAGCCGGACACCTCACGCCGGAAAATATGGAGGCTGTGGCCGAGGAGCTGCGGGCCGGCTCTCGGATTCCTGTCACTGTTGATCAAATAGTTAACGATACACTAGTAGTGACGCTTACCTATCAAGAAAGGTGCTACATGGGGATATTACTCGATTGCAACAAAAAGACTGGGCTTTTCTGCCTACCGGATATCACCTCAAAGCCAGTGGAATGCCCTGCATTGAAACCTGGTTGTGACATCCCTGAAGTCCTGAGAGAGGAACCTGTTACTAAACCTCCCAGCCAGGCTTCACATCATAGACCAAAGGATGAAAACACGCTCCCTGAAAATGACCCACTAGGTGCCCGTCTCCCAGCCCCTCTGCCCACAACAGTGCCTGCCGGGCACGGTCCATACCCTCCATATTTTGAAGGAGCTCCCTTCCCTCAGCCCATTTGGGTGCGCCACAGCTATGGTCAATGGGTACCTCAGCCACCTCCGCGGACCATTAAAAGGAAGAAGAGGCGGACCCGAGAGCCCGGGCAGATGACCATGAGCACCATCAGACTCCGCCCCCGGCAGGTGTTGTGCGAGAAGTGTAAGAACACACTGAACAGTGACGAGGACAGTAAGGACGGGATGCCCACAACCAAGGCTTCCAGGAAAGAGAACGCTCCACAGAGCGATGAAGACTCCAAAGACGGGTCTGTGAAGTTGACCAGGAAAGAGGATGCAGATGCCACCAAGGATAACAGCAAGAGGCGGGAGAATGGCCCCAACGGCTATGACAGCAAGCGGCTCCGGAAGGACAAGAGGGATGAGGAACCAAAGTTCCCTGCAGTGGACATCATTCCCCACAGCCCGGTCATCAAGATCTCCTACAGCACTCCGCAAGGCAAGGGCGAGGTGATGAAGATCCCAGCTCGGGTCCACGGCTCTGTCAAGCCCTTCTGTCCTAAGCAGCTGATGCAAAACGGCCTAAAAGGCCAGCTGGGCAAGGTGCCCGAGcccaccaccctaacccagacccaGGAGCAGCGCCACATCCTGGACGCCACCAGGACGGGCCTGACCGTGTCCATTCCCAAACTCAAGCTCCCCAGACCCCCAACGGCTGGCCTGGACTTCCCCTCCCCCAAGATTCGAGTGAGGACCCTGGGGGACGGAGAGGACAGCCTGACGGTCTACGATGCAGAGCTggtagagaggcagagcagaAAGAGCTTTGGGGTCCCGGTTCCTCGTCCCCTACCCCACTCGGAGGACTCTGGGGATAAAACCCCCATGGAACTGTGGTCGGGGAGCTCTGGAGAGGAGGTAGACCGAGGCCAAAGTGACCTTGCGCTGCTCATCAACCTTCGCAAGAGGAAAGCGGACTCCTCCAGCCTGTCCGTGTGCAGCACAGACAGTCTAGACGAATCCAAATCCTTCAGCTCAGATGGCACGTCCCCAGAGCTGTGCGACCTAGCGCCCGGCGAGCACATCTCCTCCATGTCCTCCTCGATCTCACAAGACGACAGCAAGACTGTGCCGCCACTCACCGTGCGCCTGCACACACGTAGCATGACCAAGTGCGTGACGGAGGAGGGCCACGCGGTGGCCGTGGGAGACGTGGTGTGGGGGAAGATCCATGGGTTCCCCTGGTGGCCGGCGAGGGTGCTCAGCATCAGCGGCAGCCGCAAAGAGGAGTCTAACTGCGAGGTCCAGTGGCCAGAGGCCAAGGTGGCCTGGTTCGGCTCGCCCACTACCTCCCAGCTGTCCGTTGCCAAACTCTCCCCCTTCCGGGAGTTCTTCAGGTCGCGATTCAACCGCAAGAAGAAAGGGATGTACCGGCGAGCCATCGTGGAAGCTGCCAAGGCCGTGGGCCACATGAGCCCCGAGATCacctctctactcacctctcaCTGCGAAACAGGCTGAAGGCGGAAGAATGGTCTCCTGTCAGAGGTTGCGGATCTCTGACTCTTGAGTCATCTAtccccaggagagagagggagcgtgtGCAGTTTCCACGGTCACTATTTATACAGCATTTTCCCAACCCCACATGGCTGGAGGAAAATGGCTGCTCAGGTGGAATGTTGTTGGCTGGATAAGGGAGCAAGAAAGGGCAATTTTGAGGCATCTCATGGACTACACGGAACAATTCCTCAATTTTgtatttttaaattttattttttagATGTAACCACATTTCAATAGAACTGAATAGCAACATACTACAaatcagaatgtatttattatctGTAACCATTTATTATCCATAACAATTTAAGTTCTACAATCCCATGAGATCTCCATACTGCTGCTTTTGTGAACGGTCCTCTCGACCGATTGGTCGCGAAGCGGTTCAACGACAACCAGTCAGAGGACCTTGTCAGGTCCGTTCAGTCCCAGTGCCATCCTCATCGGAAGCCCAGCAACTCTTTTCGAATAGACCAGGAAGCATATCCACAACATTTCTGGTGAAAAGTCTTACACTTAAgttcattactttccaaatatGAAACTGTGAAACTGTTCCATCCAGAGATAGTACTGTAGTTTATTCTATCATACAGTGTTTCATCTTTGTAGCCTTCTTCAGCGTTGCTAGTTGGATACGTCGATGTAAcgttatttatacatttttttttttttttcaaacgtTTCTCTCTTCCATTTCAGTTTGGTTTGAATACTTCAGAAGTGTGGTATCTATGGGTTATTTGTGAGCGATCCCAGAGTTAATTTAGACTCACTTTTAATTATTTGTGTCATGTAAAGAAAAGCACTTTATCTGTACCTTTTGTGGCCTGCTGTAAGCTCATTGTCCGAACACTAACTGGAGTTACAGCACTGACAGGCAGCGGGAGTTCAAATGTCCCACGTTGACTATCCATGGCCTTGGagatgtacttttttttttttagttttggGATGCCAGAGATTGATCCTTTCAGGGGTGGTTGTGTACACTGTATTCTTGCATTTTTGTCTCCGGTGTGTCTTTGTACATTCTCTCAACCCACCCCAGTTCTATCCCCCGTCAAATGTTTCCACTGGAGAGAGTGGACAAAAGTGTCAAACACTATGCATCAATTAAAGCTTTATGGTCACTCAGAAATGCTGTAAGAATACTGTGAATTCAACtcttttgagtgtgtgtggggagatGGGTGGCTGCTCACTACTGGCTACATGTCTGGAGATGGAGAAACTGCAGGATCGACCTTTATTGATCTTAGTTGAAAGCAGCACTTTTGGAATgtaggagggaaggaaggggagtCGGAACATatactacatggccaaaagtatagGGACATTCTTGGAATTGGtgtattcggctatttcagccacagccgttgctgacaggtgaatgcaattgagcacaccgccatgcaatctccatagacagacattggcagttgaatggccttactgaagagctcagtgactttcaacgtggcaccgtcaaaggatgatacctttacaacaagtcagtttctcaaatttctgccttgctttagctgccccggtcaactgcaagcggtgttattgtgaagtggaaacatctagacGCAACAATGGGTTTACATGGCCTAAGAGCCACGCACCAGCCTAAGATCATAATGCGCAATCGCAAGAGTctgctggagtgatgtaaagcttgatgacattggactctggagcagtggaaatgctctCTCTGAAGGGACgagtcacgcttcaccatctgacagtcaggtggacgaatctgggtttggcggatgccagcagaacgctacctgccccggTGCATAGTGCCAACAAGTTTGGTAGAGGATAAATtaaggtctggggctgtttttcatggttagcccccttagttccattgaagggaaatcttatctgtgcttccaactttgtggcaacagtttggggaaggccctttcttatttcagcaggacaatgcccctgtgcacgaAGCGAGGtaaatacagaaatggtttgtcaagatcggtgtggaagaacttgcctGGCCTACACGGAGCCCAGACCTCAAACccttcgaacacctttgggatgaattggaacgccaactgccagtcaggcctaatcgcacaacatcagtgcccaacctcactaaagctcttatggctgaatggaagcatgttccaatatctagcggaaagccttcccagaagagtggaggctgttatagcagcaaaggggggaccaactccatattcatgCCCATggtttttggaatgagatgttcgacaagcaggtgtccacatactgctggcCAGTGTCGGTAGTTCAGTAGGCCCCAAACAGAATAAAAAAGCAAGGACTACCTGTACTTGTCCAATAAAAAAATGGCTAATTTtagttttctgttgcaaaatgttttccgTTGCAAGCCCCAATGAACACGACCAAGAGCTCCTGAtgcgtttttttttctccattttgaaTCCCTTTGGTTTTTGTTGACTCTTTAGGATTGTGGAAGGAGAGAGTGCCTAGCTCCTTTCACCTGTTTTATGATTAAGATGGAAGCGGATGTCAGGAAATGTTGTGTTTTGATGAGCAACATGGCTGTCTGCTGTTGCCCTCGTTGGTCAATGTTATTGGccattttcagttttttttgtatatgtactgtacgtaaaataaaatatacaggCAATACTTGGCA
>XM_021608115.2
TGTTCTGAAATGGTGGCTACATGAGCCAACAATAAACGGAAAGCCAAACGGTATAATTTTAAGCAAGACAGAGGGGCAACCTCAAAATATTTATATCATCTGTCTTTGTGTGATGTCACCAGTGGCAGAACTGTTGTAATTGACTTGGTGGGGGGTGATGGCGTCATTTCGTGCCCTGGTGTACCCTCCCGTGCTCGAAAGTAGAAGGGAGAAGCATCTTTAGCAGAGGCGATCGTGGCTCCCAGGGCCGGGCTCGAGTACCGCAAAGCCGGACACCTCACGCCGGAAAATATGGAGGCTGTGGCCGAGGAGCTGCGGGCCGGCTCTCGGATTCCTGTCACTGTTGATCAAATAGTTAACGATACACTAGTAGTGACGCTTACCTATCAAGAAAGGTGCTACATGGGGATATTACTCGATTGCAACAAAAAGACTGGGCTTTTCTGCCTACCGGATATCACCTCAAAGCCAGTGGAATGCCCTGCATTGAAACCTGGTTGTGACATCCCTGAAGTCCTGAGAGAGGAACCTGTTACTAAACCTCCCAGCCAGGCTTCACATCATAGACCAAAGGATGAAAACACGCTCCCTGAAAATGACCCACTAGGTGCCCGTCTCCCAGCCCCTCTGCCCACAACAGTGCCTGCCGGGCACGGTCCATACCCTCCATATTTTGAAGGAGCTCCCTTCCCTCAGCCCATTTGGGTGCGCCACAGCTATGGTCAATGGGTACCTCAGCCACCTCCGCGGACCATTAAAAGGAAGAAGAGGCGGACCCGAGAGCCCGGGCAGATGACCATGAGCACCATCAGACTCCGCCCCCGGCAGGTGTTGTGCGAGAAGTGTAAGAACACACTGAACAGTGACGAGGACAGTAAGGACGGGATGCCCACAACCAAGGCTTCCAGGAAAGAGAACGCTCCACAGAGCGATGAAGACTCCAAAGACGGGTCTGTGAAGTTGACCAGGAAAGAGGATGCAGATGCCACCAAGGATAACAGCAAGAGGCGGGAGAATGGCCCCAACGGCTATGACAGCAAGCGGCTCCGGAAGGACAAGAGGGATGAGGAACCAAAGTTCCCTGCAGTGGACATCATTCCCCACAGCCCGGTCATCAAGATCTCCTACAGCACTCCGCAAGGCAAGGGCGAGGTGATGAAGATCCCAGCTCGGGTCCACGGCTCTGTCAAGCCCTTCTGTCCTAAGCAGCTGATGCAAAACGGCCTAAAAGGCCAGCTGGGCAAGGTGCCCGAGcccaccaccctaacccagacccaGGAGCAGCGCCACATCCTGGACGCCACCAGGACGGGCCTGACCGTGTCCATTCCCAAACTCAAGCTCCCCAGACCCCCAACGGCTGGCCTGGACTTCCCCTCCCCCAAGATTCGAGTGAGGACCCTGGGGGACGGAGAGGACAGCCTGACGGTCTACGATGCAGAGCTggtagagaggcagagcagaAAGAGCTTTGGGGTCCCGGTTCCTCGTCCCCTACCCCACTCGGAGGACTCTGGGGATAAAACCCCCATGGAACTGTGGTCGGGGAGCTCTGGAGAGGAGGTAGACCGAGGCCAAAGTGACCTTGCGCTGCTCATCAACCTTCGCAAGAGGAAAGCGGACTCCTCCAGCCTGTCCGTGTGCAGCACAGACAGTCTAGACGAATCCAAATCCTTCAGCTCAGATGGCACGTCCCCAGAGCTGTGCGACCTAGCGCCCGGCGAGCACATCTCCTCCATGTCCTCCTCGATCTCACAAGACGACAGCAAGACTGTGCCGCCACTCACCGTGCGCCTGCACACACGTAGCATGACCAAGTGCGTGACGGAGGAGGGCCACGCGGTGGCCGTGGGAGACGTGGTGTGGGGGAAGATCCATGGGTTCCCCTGGTGGCCGGCGAGGGTGCTCAGCATCAGCGGCAGCCGCAAAGAGGAGTCTAACTGCGAGGTCCAGTGGCCAGAGGCCAAGGTGGCCTGGTTCGGCTCGCCCACTACCTCCCAGCTGTCCGTTGCCAAACTCTCCCCCTTCCGGGAGTTCTTCAGGTCGCGATTCAACCGCAAGAAGAAAGGGATGTACCGGCGAGCCATCGTGGAAGCTGCCAAGGCCGTGGGCCACATGAGCCCCGAGATCacctctctactcacctctcaCTGCGAAACGTAGAGGCTGAAGGCGGAAGAATGGTCTCCTGTCAGAGGTTGCGGATCTCTGACTCTTGAGTCATCTAtccccaggagagagagggagcgtgtGCAGTTTCCACGGTCACTATTTATACAGCATTTTCCCAACCCCACATGGCTGGAGGAAAATGGCTGCTCAGGTGGAATGTTGTTGGCTGGATAAGGGAGCAAGAAAGGGCAATTTTGAGGCATCTCATGGACTACACGGAACAATTCCTCAATTTTgtatttttaaattttattttttagATGTAACCACATTTCAATAGAACTGAATAGCAACATACTACAaatcagaatgtatttattatctGTAACCATTTATTATCCATAACAATTTAAGTTCTACAATCCCATGAGATCTCCATACTGCTGCTTTTGTGAACGGTCCTCTCGACCGATTGGTCGCGAAGCGGTTCAACGACAACCAGTCAGAGGACCTTGTCAGGTCCGTTCAGTCCCAGTGCCATCCTCATCGGAAGCCCAGCAACTCTTTTCGAATAGACCAGGAAGCATATCCACAACATTTCTGGTGAAAAGTCTTACACTTAAgttcattactttccaaatatGAAACTGTGAAACTGTTCCATCCAGAGATAGTACTGTAGTTTATTCTATCATACAGTGTTTCATCTTTGTAGCCTTCTTCAGCGTTGCTAGTTGGATACGTCGATGTAAcgttatttatacatttttttttttttttcaaacgtTTCTCTCTTCCATTTCAGTTTGGTTTGAATACTTCAGAAGTGTGGTATCTATGGGTTATTTGTGAGCGATCCCAGAGTTAATTTAGACTCACTTTTAATTATTTGTGTCATGTAAAGAAAAGCACTTTATCTGTACCTTTTGTGGCCTGCTGTAAGCTCATTGTCCGAACACTAACTGGAGTTACAGCACTGACAGGCAGCGGGAGTTCAAATGTCCCACGTTGACTATCCATGGCCTTGGagatgtacttttttttttttagttttggGATGCCAGAGATTGATCCTTTCAGGGGTGGTTGTGTACACTGTATTCTTGCATTTTTGTCTCCGGTGTGTCTTTGTACATTCTCTCAACCCACCCCAGTTCTATCCCCCGTCAAATGTTTCCACTGGAGAGAGTGGACAAAAGTGTCAAACACTATGCATCAATTAAAGCTTTATGGTCACTCAGAAATGCTGTAAGAATACTGTGAATTCAACtcttttgagtgtgtgtggggagatGGGTGGCTGCTCACTACTGGCTACATGTCTGGAGATGGAGAAACTGCAGGATCGACCTTTATTGATCTTAGTTGAAAGCAGCACTTTTGGAATgtaggagggaaggaaggggagtCGGAACATatactacatggccaaaagtatagGGACATTCTTGGAATTGGtgtattcggctatttcagccacagccgttgctgacaggtgaatgcaattgagcacaccgccatgcaatctccatagacagacattggcagttgaatggccttactgaagagctcagtgactttcaacgtggcaccgtcaaaggatgatacctttacaacaagtcagtttctcaaatttctgccttgctttagctgccccggtcaactgcaagcggtgttattgtgaagtggaaacatctagacGCAACAATGGGTTTACATGGCCTAAGAGCCACGCACCAGCCTAAGATCATAATGCGCAATCGCAAGAGTctgctggagtgatgtaaagcttgatgacattggactctggagcagtggaaatgctctCTCTGAAGGGACgagtcacgcttcaccatctgacagtcaggtggacgaatctgggtttggcggatgccagcagaacgctacctgccccggTGCATAGTGCCAACAAGTTTGGTAGAGGATAAATtaaggtctggggctgtttttcatggttagcccccttagttccattgaagggaaatcttatctgtgcttccaactttgtggcaacagtttggggaaggccctttcttatttcagcaggacaatgcccctgtgcacgaAGCGAGGtaaatacagaaatggtttgtcaagatcggtgtggaagaacttgcctGGCCTACACGGAGCCCAGACCTCAAACccttcgaacacctttgggatgaattggaacgccaactgccagtcaggcctaatcgcacaacatcagtgcccaacctcactaaagctcttatggctgaatggaagcatgttccaatatctagcggaaagccttcccagaagagtggaggctgttatagcagcaaaggggggaccaactccatattcatgCCCATggtttttggaatgagatgttcgacaagcaggtgtccacatactgctggcCAGTGTCGGTAGTTCAGTAGGCCCCAAACAGAATAAAAAAGCAAGGACTACCTGTACTTGTCCAATAAAAAAATGGCTAATTTtagttttctgttgcaaaatgttttccgTTGCAAGCCCCAATGAACACGACCAAGAGCTCCTGAtgcgtttttttttctccattttgaaTCCCTTTGGTTTTTGTTGACTCTTTAGGATTGTGGAAGGAGAGAGTGCCTAGCTCCTTTCACCTGTTTTATGATTAAGATGGAAGCGGATGTCAGGAAATGTTGTGTTTTGATGAGCAACATGGCTGTCTGCTGTTGCCCTCGTTGGTCAATGTTATTGGccattttcagttttttttgtatatgtactgtacgtaaaataaaatatacaggCAATACTTGGCA

Function

NR:

description
PWWP domain-containing protein 2B-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608109.2 False 4909 mRNA 0.50 3 64792360 64801657
XM_021608115.2 True 4916 mRNA 0.50 3 64792360 64801660

Neighbor

gene id symbol gene type direction distance location
LOC110526894 LOC106605012 coding downstream 56779 64472402 ~ 64735581 (-)
LOC110526867 LOC100136521 coding downstream 407839 64369803 ~ 64384521 (-)
LOC110526858 LOC106604947 coding downstream 677636 64049113 ~ 64114724 (-)
LOC110526836 LOC106576780 coding downstream 811645 63694607 ~ 63980715 (-)
LOC110526802 LOC106576784 coding downstream 1113147 63654551 ~ 63679213 (-)
LOC110526944 lrrc27 coding upstream 732 64802392 ~ 64809629 (-)
LOC110526980 LOC106576770 coding upstream 150182 64951842 ~ 64957672 (-)
LOC118964437 NA coding upstream 261620 65063280 ~ 65064797 (-)
mcfd2 mcfd2 coding upstream 367182 65168842 ~ 65171950 (-)
stpg4 cssa18h2orf61 coding upstream 428397 65230057 ~ 65235096 (-)
G72324 LOC106576775 non-coding downstream 8627 64781401 ~ 64783733 (-)
G72310 NA non-coding downstream 47824 64743479 ~ 64744536 (-)
G72292 NA non-coding downstream 68591 64723348 ~ 64723769 (-)
G72237 NA non-coding downstream 144725 64645052 ~ 64647635 (-)
G72236 NA non-coding downstream 145173 64644484 ~ 64647187 (-)
G72429 NA non-coding upstream 137755 64939415 ~ 64939632 (-)
G72431 NA non-coding upstream 139924 64941584 ~ 64941880 (-)
G72432 NA non-coding upstream 140474 64942134 ~ 64942355 (-)
G72410 NA non-coding upstream 144197 64945857 ~ 64947003 (-)
G72402 NA non-coding upstream 183566 64985226 ~ 64991348 (-)
G70013 NA other downstream 1514608 63277208 ~ 63277752 (-)
G69210 NA other downstream 2374064 62411522 ~ 62418296 (-)
LOC110526417 LOC106576819 other downstream 2809965 61981652 ~ 61983330 (-)
G68736 NA other downstream 3106052 61682278 ~ 61686308 (-)
tjap1 tjap1 other upstream 2017184 66806836 ~ 66883731 (-)
LOC110527436 ppp2r5d other upstream 2193022 66965664 ~ 67010646 (-)
LOC110527584 LOC106576720 other upstream 2584849 67386509 ~ 67389299 (-)
LOC110527687 sncg other upstream 2867929 67669589 ~ 67681775 (-)
sdhaf4 LOC106576700 other upstream 3356301 68157900 ~ 68162024 (-)

Expression


Co-expression Network