LOC110526991 (LOC106576769)


Basic Information

Item Value
gene id LOC110526991
gene name LOC106576769
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 64972394 ~ 64984304 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608165.2
GCTGGCACACTGTCCAACACACTCCCGGACGtgccacacacacaggaggagcagggagaggactTTTCAGAACTTATCTAGAGTGGATCCTTGGACTATAGCTGAAAAGTCTTTGGTCCAGGATGAACTTTGCCGCCCAGTTCATCTACGCCAACTACGCCGGTGATGGATCGCCCAGGAGAGTGGGATTCAACGACAGTGAGAATGACCCCTTCTGGCAGAGcGAGGAGCAGCGTCTTGGGCCAACTAAACAGGGCTGCTCCACCTCCTCCAAGAGTACCTGCAACAAGGACGCCCCCGTCTGTAACGGGGTTGCGGGCTGGCGGCCCACTCTCATCCACCCAGAGCGCCTGAAGGACTTTGgtattgaggaggaggagtgccTCAATGGGGAAGTCAAAACGTTTGAGACCAAGGTGGTGGGCGCCCCTGAGATCCAGCTAATGGACCCACCCAAGACTAACAAGAAGAGAGGCAGCGAGCGCAAAGCAGTCCCACCACCCAAGCCTGAGTACCTCCGCTTCGAGGACATCAGTGCTGCAGCCTTCAAAATCCAGTCAGTGATGCAGAAGACCCCTTGTACGTACTCCAGACTGTCCAAACAGTATGGCATGGAGATCTTCCTAAAGAAGGAGCTCCTCCACTACACAGGCTCTGTAAAGGAGAGAGGCGTTTTATACCTACTCACCTCCCTCAACCAGGAGCAGCAGAAGAAGGGGGTGATCGTAGCTAAAGACTGTAGCTTCTCCATGGCCGTGGCTCACCATGCGGTGGAGTTGAGGATCCCAGTGTTTGTCATCATGCCAGCCAGCTGTGCCCAGCCCCACCTCAGGGTGTACCGAGACTACGGCGCCATGGTCATCTCCTATGGTAGTACCGCCAGGGACTCCCTGAACCACGCCCGCCACCTGGCCAAGGAGAACGGATACCTCTGCCTGGAAGAgGATGATAGTGCTGTGTACTTAGCAGGGCTGGGCACAGTAGGCATGGAGATCTATGAGCAGGTGCCCAAACTAGATGCAGTCATTGTGCCCACAGGTGGGCAGTGTAGTCTACTGGTCAGCACAGCAGCAGCCATCAAACACCTCAACTCACGCATCACTGTCATAGGAGTTGAACCAGAAGGATTCCCGCTGCTACTACAGTCCCTCAAAACAGGCAGCCCAGTGGCTAGTGAACTTTACAACGTCCCCAACGGGAAGCTTTATGGAGATCTATTTGAGCACTCACTGGGGACCCACACCTTCCAGCAGGCTAAGAAATATGTGGACAAAGTCGTTACTGTCAGAGAAGAGGACtctctggtagccatgctgaggTTTCAGGAGTTTGAACGCTCCACAGTGGACACAGAGGGAGCCCTGGGACTAGCGGCCATCTTGGCTGGGAAACTACCAGAGCTAAAGGGCAAAAGGGTAGCTGTGGTGGTTAGCAGTGCTAACATGGAGTTGGACCTGATCAGACAGTGTGTTGACCGCGCCCTGGTTCTGGATGACCGCGTCAGCAAGTTTACGGTGCAGCTGGGGGACTTTCCGGGGGACATGGCCAAGCTACTGGACATGCTGGCAAGAGAGGACATCAAgCTGTTGGATATTTGCCACCGGAGACACAGTGACAAAGGCGATCTCTTCAAGGCCCAGGTGGAGTGTGTAGTGGAGACCAGGGATAAGACACAGAGCACTCAGCTCCGCAGGATACTTTCTGAGCGCTACCCCACACTACACTGGCTGGACCGGTGATCAACACTTGTCATGGCTCTCAATCtgaccatccacacacacacgtacagta

Function

NR:

description
serine racemase-like

GO: NA

KEGG:

id description
K01754 E4.3.1.19, ilvA, tdcB; threonine dehydratase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608165.2 True 1791 mRNA 0.55 11 64972394 64984304

Neighbor

gene id symbol gene type direction distance location
LOC110526969 stk32c coding upstream 26230 64809255 ~ 64946164 (+)
LOC110526912 LOC106576775 coding upstream 188657 64773915 ~ 64783737 (+)
LOC110526877 LOC106576777 coding upstream 501310 64468523 ~ 64471084 (+)
LOC118965254 NA coding upstream 974093 63980371 ~ 63998531 (+)
LOC110526795 NA coding upstream 1350965 63620237 ~ 63621429 (+)
LOC110532561 LOC106576767 coding downstream 8766 64993070 ~ 65016685 (+)
LOC110527002 rhoq coding downstream 36899 65021203 ~ 65041610 (+)
LOC110527013 socs5 coding downstream 83784 65068088 ~ 65120931 (+)
prop1 LOC100192335 coding downstream 177354 65161658 ~ 65167877 (+)
LOC110527046 LOC106576764 coding downstream 188985 65173289 ~ 65221687 (+)
G71779 NA non-coding upstream 39914 64905999 ~ 64932480 (+)
G71472 NA non-coding upstream 512025 64460165 ~ 64460369 (+)
G71468 NA non-coding upstream 513484 64458532 ~ 64458910 (+)
G71464 NA non-coding upstream 516261 64455663 ~ 64456133 (+)
G71456 NA non-coding upstream 524700 64447482 ~ 64447694 (+)
G71654 NA non-coding downstream 2924 64987228 ~ 64991904 (+)
G71826 NA non-coding downstream 19981 65004285 ~ 65037581 (+)
G71935 NA non-coding downstream 210514 65194818 ~ 65256475 (+)
G71945 NA non-coding downstream 245860 65230164 ~ 65231403 (+)
G70011 NA other upstream 1697098 63274963 ~ 63275296 (+)
G67930 mcmbp other upstream 3239006 61729765 ~ 61733388 (+)
G67806 LOC106581772 other upstream 3657142 61314874 ~ 61315252 (+)
G66188 NA other upstream 5030330 59941486 ~ 59942064 (+)
LOC110527164 LOC106576754 other downstream 931431 65915581 ~ 65922285 (+)
G73515 NA other downstream 1303375 66287679 ~ 66288469 (+)
LOC118965274 LOC106576739 other downstream 1436191 66417495 ~ 66424081 (+)
G74067 LOC106576735 other downstream 1771903 66756207 ~ 66758984 (+)
G74139 NA other downstream 1800031 66784335 ~ 66784969 (+)

Expression


Co-expression Network