LOC110532561 (LOC106576767)


Basic Information

Item Value
gene id LOC110532561
gene name LOC106576767
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 64993070 ~ 65016685 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036982824.1
TGTGCGCATTTCGAGCGAAATTCCTTTATCAATTGGGGAGAACATCCGATGGGTCTTGCCAGGAAACTAATCCTGAAGACGGCTGCAGTACCATCATTGACACTTCCCACCAGCATATGTGAAAAAGTGCAAAATGACCCTAGACAGGTGGCAGTCACTGGAGCCTTGTCCCGGAGTACCAACCGCAGAAAGAGGACCAGCTTCACCAAAGAGCACGTGGCACTTCTCCGTGTCACATTTGAGACAGACCCTTACCCTGgcatcagcctgagagagagccTGTCTCAGAGCACAGGCCTACCTGAATCTCGCATCCAGGTGTGGTTCCAGAACAGGAGGGCTCGGACTATGAAGTATAAGGGAGCTAAGGCCGTGTGGCAGTCTGACTCTGGCTTCCACTCCCCTGGTGGGTTCACCCCTGTCCAGGACACAGTTTCTCAGCACCGCACCATGGGGACAGGGGCTACCCAGCCTGACCTGGCCCCTCTGTCCACCTCCCCCTGCCTGCCCCCTGCCTACCCCATCCAGTTGAAGGAGGAGTTGGATGACTTTTTCTATGGATGCTGCCCTTCACCCTACACTGGAGTGGAGGAGACTGGCCACTACAACTCCCTGTTTGAACTGAAGCAAGCCAGGGTGCTGGGATACAGTGCCAGCCCACCACTGAATAGCCCCAGGCACCAGATGGTTCCAGGAGCCTGGCCCCAGGCGGGTGATCAGATGTCCCCAGTGCAGTCCACGTGGAGCCCCTTTCCTCTGGAGGTAAGGAAAAGCAGCGCAGGCTCCAGCCAGGCCTTCCTTTACCATAGCTCAGCTGAGCAGCAGCCCCTCTACAGCAACCCCCAGGAAGCCTATGGAGGCCCCATTACCCAGACCCAGGCCCCAGTCACCCCGGATTCCGGCTGCTGGGAGGTTGGACAAGAGAACACCCCTACGATGAAAGGCCAAGGTTCCCAGTTGTATGGCTCCTGGAGCATGGATATGTCTACCCCAGAATACCCAGAGCTCCCTGTCCTGTCCCTACAGGATATCCTGAGGGAGCTGGATGAAGAGTGCTGGGAGGGAAATAGCCTGAACAGCTACCCCAATGAGGATAATCTGGTTAACTGTTGAAAACTTTTTTTTGTGGAAAAACAAGAGGGTTTTACTGTATATCCTGTGTTGCTGGAATGTCAACTATGGACTACATGTTGACAAatgttctcagagagagagagagagaggggatcatCTTTAGGAATTCTACAACAATCATATTAATTCACCCTCATGAACTTCATTTTACattatctatatatctatatatctatttaTTCATCTTTTGTTCTCTGTACTTAAAttctaaatacatttttattaaaacaga

Function

NR:

description
homeobox protein OTX1 B-like

GO:

id name namespace
GO:0001757 somite specification biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0030335 positive regulation of cell migration biological_process

KEGG:

id description
K24896 DUX; double homeobox protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036982824.1 True 1366 mRNA 0.52 3 64993070 65016685

Neighbor

gene id symbol gene type direction distance location
LOC110526991 LOC106576769 coding upstream 8766 64972394 ~ 64984304 (+)
LOC110526969 stk32c coding upstream 46906 64809255 ~ 64946164 (+)
LOC110526912 LOC106576775 coding upstream 209333 64773915 ~ 64783737 (+)
LOC110526877 LOC106576777 coding upstream 521986 64468523 ~ 64471084 (+)
LOC118965254 NA coding upstream 994769 63980371 ~ 63998531 (+)
LOC110527002 rhoq coding downstream 4518 65021203 ~ 65041610 (+)
LOC110527013 socs5 coding downstream 51403 65068088 ~ 65120931 (+)
prop1 LOC100192335 coding downstream 144973 65161658 ~ 65167877 (+)
LOC110527046 LOC106576764 coding downstream 156604 65173289 ~ 65221687 (+)
LOC110527082 epcam coding downstream 275023 65291708 ~ 65296104 (+)
G71654 NA non-coding upstream 1166 64987228 ~ 64991904 (+)
G71653 NA non-coding upstream 7781 64943334 ~ 64985289 (+)
G71779 NA non-coding upstream 60590 64905999 ~ 64932480 (+)
G71472 NA non-coding upstream 532701 64460165 ~ 64460369 (+)
G71468 NA non-coding upstream 534160 64458532 ~ 64458910 (+)
G71935 NA non-coding downstream 178133 65194818 ~ 65256475 (+)
G71945 NA non-coding downstream 213479 65230164 ~ 65231403 (+)
G71997 plekhh2 non-coding downstream 310908 65327593 ~ 65328512 (+)
G72047 NA non-coding downstream 389745 65406430 ~ 65444673 (+)
G70011 NA other upstream 1717774 63274963 ~ 63275296 (+)
G67930 mcmbp other upstream 3259682 61729765 ~ 61733388 (+)
G67806 LOC106581772 other upstream 3677818 61314874 ~ 61315252 (+)
G66188 NA other upstream 5051006 59941486 ~ 59942064 (+)
LOC110527164 LOC106576754 other downstream 899050 65915581 ~ 65922285 (+)
G73515 NA other downstream 1270994 66287679 ~ 66288469 (+)
LOC118965274 LOC106576739 other downstream 1403810 66417495 ~ 66424081 (+)
G74067 LOC106576735 other downstream 1739522 66756207 ~ 66758984 (+)
G74139 NA other downstream 1767650 66784335 ~ 66784969 (+)

Expression


Co-expression Network