LOC110527002 (rhoq)


Basic Information

Item Value
gene id LOC110527002
gene name rhoq
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 65021203 ~ 65041610 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608175.2
GAACTCACCTTTTCTATAGTGCCAATGCAAACTAGGCGAGAGACCGAGAGTCAAGGGGCGAACTGGGGAACAGGCTAAGCAGCGGGCTTCCAAGCGCGTCTCGCAAATACATCAACGATAGGGCGGGGGACTGGGGACTAGGGCGAACCCGTTTCGACTGCTGAGACTTTCTAGACTTTGCTGAACCGGTAAATAGCCACTCTGCACAGTGCCTGTGCTTTTTGTGTATGCAGTGTGGAAATAAAGGGGTTTTAAGGCCACATTTGCGAACTGGACAGGAGGAAGGAGAAATGGAGTTTCCATTGGTTTCGGTGAGTCGCGCATTTGGTCTCCGTCTCTGGTAATGCCAGTGGTGTGGGGATCTCCGTGCAGCTCAGGAAAACAGGGCGTCGGAGGATGGTGGTAATGATAGGATCATCATGGCAAACGGAACTGGTACTCTTATGTTGAAATGCGTTGTGGTTGGAGACGGTGCTGTGGGCAAAACGTGTCTGTTGATGAGCTATGCCAACGACGCCTTTCCAGAGGAGTATGTGCCCACTGTGTTTGACCATTATGCAGTGAGTGTCAATGTTGGCGGAAAGCAGTACTTATTGGGACTGTATGACACAGCTGGTCAGGAGGACTATGACCGCTTGAGGCCTTTGTCGTACCCCATGACCGATGTCTTCCTCATCTGCTTTTCTGTGGTCAACCCGGCTAGTTTCCAGAATGTGAGGGAGGAGTGGGTCACCGAGCTGCAGGAGTATGCCCCAAGTGTCCCCTACCTCCTCATAGGCACTCAGattgACCTGCGTGATGACCCCAAGACCATTGCCAAACTGAATGACATGAAGGAAAAACCCATCACCACAGAGCAGGGCCAGAAGCTAGCCAAGGAGATTGGTGCGTGTGTCTACGTGGAATGCTCGGCTCTCACCCAGAAAGGACTGAAAACTGTGTTTGATGAGGCCATTATCGCTATCCTGAACCCCAAGAGGAAAAAGGGAGTCTTGAAGAGAAGACTGGGGCCACGCTATATCAACTGCTGCCTCATCACGTGAGAGATGCAAACATCCAAAAACACCTGGGTCGTATTTATTAGGGCATGCaatggaaaatgttttaaaacatgtgaaaacggaaaacaaaaacaagcatttcttattggacaagatcAGGAAGCCCCACCCTGTTTCAggctgttttcttccatttggtgcctaatgaatacaaaCCAGAACGAATGACAGAGACCGCGGAGAGGACataaaaggggggagagaggctgAAGGACCGACATGGACAAGGACCCTATTTTTAGTTTGGGGCTCTTGAGCGGTTTTGTCTCTCCTGCTGTTGACCAATGGAGTTAGGGGGCAGCTTTATTACCAAAGGAGCACAATACCCAAGTCAACAACGCCCTTCAGTAAGACTTTATTTGCCTTTATAAGTACTTTTAAAAAACACGCTGTAAGCTGTCAGAAAACCCATAGGTATCACGTGCCCATTTAACTCCTAATATGACATGTATTTTTAATAATATTTGCTGTAGCAATTAACGAATGGGTTGATTGCATTTATTGAAGGCGCTTTCCATCAAGCCTCCAAGCGCTTTACATTGTGTGTTTGAGTAACTCACCTCAGCCACAACCAATGAAATGCTTTGTTTAAAAGAACAGGCTATTCCCCTCAACTATGGGGAGTTGTCTTTTTTTTCTACTAATCCCACATTTTATAACATTATCTGCTCTTCTTGCTCAGTTTGCGGTGCTTGCAGTATTATTACTAAACTTGGACTTGAATTAATCAGTAACCCAATGGTGGCCAAATAATTGAATGCACACAGCTGCGTGGGATACAGACTCTTTGGGGAGAGAAGCACACAACATGAAGCACACTCCACATACCTATCCTTGTCCAATAAAGCACAGTTAAAAGTTGACCCACAAACCCCTACCATTAGCATTATCGTGCTGACCTGAACATAGTGTGTTAATGGCTGCAGAACCAGTCCATCCCAATTCAGCTCAGTTCGgcttggctcagtagtgtgaaaagggcaCCCCTCAATTCTGTCATTGAAGCACAGAACATACCATGGTTACAACATCCACCCCCAAAGGCCAAGGAGGTGCATGTATGAGCACAATAAGCCTGCTCCAACCATATTCCAACCCCAGCCATATTCCAACCCCCTCTTCAGACACATATGCCTTCCCCAGCCAGAAGATatctcttctttttttttgcatttttctATCCATTGGGAAGGTGCTTGCCGACTGCCTGATCTTAGTGTTTTTAAGGCCAAAGTTGGActtgttaatttttttttattttttaaagcttTAATGTATATGGTGCtcctctctttctcgttctctgtCCCAGCCTGCTGTGCTGTGTAGTGTTTTCCCTAGAAGAGCGGAGTGGATTATTGAGTGTTGACATTCTCTATTTACCAGGAAGTTGTGGCACATGCTGCTACTGAGGTAAACTGAATGGATCTATAGCGGTGCAGAAACAAGTGCAGCTTCTGGTTAACCCTTTTCTCTACTCAATAAATGTGTTTTACTATCTAAAACCTTTCTTTGGGGTCTTCTTTGAGGATGTGTTACAGGACATTATGATGTTTGGTTATGTATAGATGTTGTTTTTATAAGTACAGTATTGGGCACACTTGATTTGGATCCGTTGCTAGCTAGGCCGTGGTGACCTCGTACAGGAAGGAGTGTCTTCGAAGTGTGTCACACGTGATTCCTCCCGAAACCCAGAACAACAAAGACCATGATTCACACAATGTAATC

Function

symbol description
rhoq Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in several processes, including cell projection assembly; cortical actin cytoskeleton organization; and endocytosis. Predicted to act upstream of or within small GTPase mediated signal transduction. Orthologous to human RHOQ (ras homolog family member Q).

NR:

description
PREDICTED: rho-related GTP-binding protein RhoQ

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07194 RHOQ, TC10; Ras homolog gene family, member Q

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608175.2 True 2789 mRNA 0.46 5 65021203 65041610

Neighbor

gene id symbol gene type direction distance location
LOC110532561 LOC106576767 coding upstream 4518 64993070 ~ 65016685 (+)
LOC110526991 LOC106576769 coding upstream 36899 64972394 ~ 64984304 (+)
LOC110526969 stk32c coding upstream 75039 64809255 ~ 64946164 (+)
LOC110526912 LOC106576775 coding upstream 237466 64773915 ~ 64783737 (+)
LOC110526877 LOC106576777 coding upstream 550119 64468523 ~ 64471084 (+)
LOC110527013 socs5 coding downstream 26478 65068088 ~ 65120931 (+)
prop1 LOC100192335 coding downstream 120048 65161658 ~ 65167877 (+)
LOC110527046 LOC106576764 coding downstream 131679 65173289 ~ 65221687 (+)
LOC110527082 epcam coding downstream 250098 65291708 ~ 65296104 (+)
thada LOC106576760 coding downstream 330689 65372299 ~ 65476515 (+)
G71654 NA non-coding upstream 29299 64987228 ~ 64991904 (+)
G71653 NA non-coding upstream 35914 64943334 ~ 64985289 (+)
G71779 NA non-coding upstream 88723 64905999 ~ 64932480 (+)
G71472 NA non-coding upstream 560834 64460165 ~ 64460369 (+)
G71468 NA non-coding upstream 562293 64458532 ~ 64458910 (+)
G71935 NA non-coding downstream 153208 65194818 ~ 65256475 (+)
G71945 NA non-coding downstream 188554 65230164 ~ 65231403 (+)
G71997 plekhh2 non-coding downstream 285983 65327593 ~ 65328512 (+)
G72047 NA non-coding downstream 364820 65406430 ~ 65444673 (+)
G70011 NA other upstream 1745907 63274963 ~ 63275296 (+)
G67930 mcmbp other upstream 3287815 61729765 ~ 61733388 (+)
G67806 LOC106581772 other upstream 3705951 61314874 ~ 61315252 (+)
G66188 NA other upstream 5079139 59941486 ~ 59942064 (+)
LOC110527164 LOC106576754 other downstream 874125 65915581 ~ 65922285 (+)
G73515 NA other downstream 1246069 66287679 ~ 66288469 (+)
LOC118965274 LOC106576739 other downstream 1378885 66417495 ~ 66424081 (+)
G74067 LOC106576735 other downstream 1714597 66756207 ~ 66758984 (+)
G74139 NA other downstream 1742725 66784335 ~ 66784969 (+)

Expression


Co-expression Network