Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118964437 |
| gene name | NA |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048565.1 |
| NCBI id | CM023219.2 |
| chromosome length | 95772356 |
| location | 65063280 ~ 65064797 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| Transposable element Tcb1 transposase |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005051467.1 | True | 839 | mRNA | 0.40 | 2 | 65063280 | 65064797 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110526980 | LOC106576770 | coding | downstream | 105608 | 64951842 ~ 64957672 (-) |
| LOC110526944 | lrrc27 | coding | downstream | 253651 | 64802392 ~ 64809629 (-) |
| LOC110526927 | LOC106576773 | coding | downstream | 261620 | 64792360 ~ 64801660 (-) |
| LOC110526894 | LOC106605012 | coding | downstream | 327699 | 64472402 ~ 64735581 (-) |
| LOC110526867 | LOC100136521 | coding | downstream | 678759 | 64369803 ~ 64384521 (-) |
| mcfd2 | mcfd2 | coding | upstream | 104045 | 65168842 ~ 65171950 (-) |
| stpg4 | cssa18h2orf61 | coding | upstream | 165260 | 65230057 ~ 65235096 (-) |
| calm2a | LOC107561747 | coding | upstream | 175459 | 65240256 ~ 65245210 (-) |
| si:ch73-105b23.6 | LOC106576763 | coding | upstream | 198484 | 65263281 ~ 65287052 (-) |
| plekhh2 | plekhh2 | coding | upstream | 236888 | 65301685 ~ 65372123 (-) |
| G72455 | NA | non-coding | downstream | 66611 | 64996203 ~ 64996669 (-) |
| G72454 | NA | non-coding | downstream | 70225 | 64992572 ~ 64993055 (-) |
| G72402 | NA | non-coding | downstream | 71932 | 64985226 ~ 64991348 (-) |
| G72410 | NA | non-coding | downstream | 116277 | 64945857 ~ 64947003 (-) |
| G72432 | NA | non-coding | downstream | 120925 | 64942134 ~ 64942355 (-) |
| G72523 | NA | non-coding | upstream | 21418 | 65086215 ~ 65094495 (-) |
| G72530 | NA | non-coding | upstream | 28100 | 65092897 ~ 65094888 (-) |
| G72595 | NA | non-coding | upstream | 130459 | 65195256 ~ 65198584 (-) |
| G72610 | NA | non-coding | upstream | 160302 | 65225099 ~ 65226040 (-) |
| G72636 | NA | non-coding | upstream | 226937 | 65291734 ~ 65292022 (-) |
| G70013 | NA | other | downstream | 1785528 | 63277208 ~ 63277752 (-) |
| G69210 | NA | other | downstream | 2644984 | 62411522 ~ 62418296 (-) |
| LOC110526417 | LOC106576819 | other | downstream | 3080885 | 61981652 ~ 61983330 (-) |
| G68736 | NA | other | downstream | 3376972 | 61682278 ~ 61686308 (-) |
| tjap1 | tjap1 | other | upstream | 1754047 | 66806836 ~ 66883731 (-) |
| LOC110527436 | ppp2r5d | other | upstream | 1929885 | 66965664 ~ 67010646 (-) |
| LOC110527584 | LOC106576720 | other | upstream | 2321712 | 67386509 ~ 67389299 (-) |
| LOC110527687 | sncg | other | upstream | 2604792 | 67669589 ~ 67681775 (-) |
| sdhaf4 | LOC106576700 | other | upstream | 3093164 | 68157900 ~ 68162024 (-) |
