LOC110527013 (socs5)


Basic Information

Item Value
gene id LOC110527013
gene name socs5
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 65068088 ~ 65120931 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608186.2
AAATTGACACGAATCAACAGAGACACCCGGCGCTCACAGCAGCCTCTCCACGTTTCCAAGTAAATGCCAACAGGCCACTACTTGATTTTCTACTCCGTTGTCATTGGCGAGATGCAGTGCCTGTCATGCTGGGCCACAGGCATGGACTTTCCCTGCAGTATCCACCATCAGCAACTCGCTCTCGTCCTGCTTCCCCCATTGGAGTTCCATGTTGCCATTCTCTACCCGCCTGCAATCAACACTGAACGCCCCTTCTTTTCTCGGCTTTGCTTAGCGACCGTATTGGCTGTCAGGAACAGGAACGACCACCACGGCCGAAGAGAAGTGTCGTCCAAGAGACCGAAAAGGGTTTCTGACTTTTATGTATCATTTTAAGAGTTTTTAATTAACATATACATTGTCTTATGTATTAGAAAGTCCATTCAGAATGACATTGAAAAGCGCCCGCGTACGTTTATGTGTTTCGTTCGACACCGTGGAACTCAAGGGGGATATGTGCCTGACTTGTCTTGATAGCCATTTTTTTGCAGACAAAGAGAACTGTTGAGTAGTGTTTATAAAAGACAAAAGGGTCTTGGTCTCCTATCCATGGAGAAAGTGGGCAAGATGTGGAGCAACCTGAGGAGCCGATGCCAGACCCTCTTCCACACCGACAGTGTGGGACCCAGTACAGAGAACAGCGTGGTGGAGGTGGACGGTATGCACTGTGTGGTGGACCTGGGACGGGGAGGCAATTCAGGCGAGGCCCAGGCTTCTCGGGCCTCTAGCCTGCCCCGAAGCCTCTTGCCGCTCCCCATGGTTACTGGGGGACGACGTCACAACTGTGTGTCGGACATCCCCCAGATAGTGGAGATCACCATAGACAGCAAAGACAGTGAGGATGCGAGGGGGGGTCGTGGAGGAGTCCCTGTGGCCCGGAGAGACTCGTACTCACGCCATGCACCTTGGGGGGGCAAGAAAAAACACTCATGTTCCACTAAGACTCAGAGCTCCATGGATACAGACAGGTGGTCAGGGCGCGCGCGCGGGGCCGCTGGCCGGAGGGACCGTCGCTACGGGGTCAGCTCTATCCAGGAAATGGGGGACTCGGGGGGCGGGGGGCGCAGTCTGAGCGCCCGTTCCCTGCGCCAGCGGCTTAGTGATACAGTGGGCCTGTGTCTCCCCCTGCCCCCCCGCCGCCGCTCGCGCTCTTCCAAGACCCCCACCGTCTTGAAGCGCAAgatccacctgacagagctgatgcTGGAGACCTGTCCCTTCCCCCAGGGCTCGGACTTGGCCAACAAGTGGCACCTGATCAAGCAGCACACGGCGCCCGTCAGCCCGCATTCCTCCACGGCTCTGCTTGACGCCTTCGACACCGCCCACCCCTCCCCCGAGGACGAGGAGGAGCGTCTGCGCGAACGCCGCAGGCTCAGCATTGAAGAGGGAGTGGACCCCCCACCCAACGCCCAGATTCACACCCTGGAGGCCTTGGCGCAGGGCTCCTCTTTGTACAAACTGGGACCAAAGATGGCCCCCGGCATTGCAGAGGCCTCTGGGGAGGCCCGGGGCACCGCGGCCTGCTGCTCAGGAGTGGGAGTATCGGTGCAGGTGCTCGGGGGGGCTACAGCCCAGTTGGCTGACTGTGACTCGGAGGAGGACTCAACTACCCTATGCCTGCAGGCCCTGAGGCCCAAGCAGCGGCACGCGTCCGGGGATGGCAATCTGAGCCGGAACCAGCCTGGGCCATGGAAGGTGCACACGCAGATTGACTACATCCATTGCCTGGTACCGGACCTGCTGCAGATCACTGCACTGCCCTGCTACTGGGGCGTGATGGACCGCTACGAGGCGGAGGCGCTGCTGGATGGACGGCCTGAGGGCACCTTCCTGCTGCGAGACTCGGCCCAGGAGGACTACCTGTTCTCGGTCAGCTTTCGCCGCTACAACCGCTCGCTGCATGCCCGCATCGAGCAGTGGAACCACAACTTCAGCTTCGATGCCCACGACCCCTGCGTGTTCCACTCATCCACCGTCACAGGCCTACTGGAGCACTACAAGGACCCCAGCGCCTGCATGTTCTTTGAGCCGCTGCTCACGGCGCCACTCAACCGGGCCTTCCCTTTCGGCTTGCAGCACCTGGCACGCGCCGCCATCTGCCCCCGGACCACGTACGACGGCATCGGCGGCCTGCCACTGCCCCCGGCCCTGCAGGACTTCCTCAAGGAGTATCACTACAAACAGAAAGTGCGTGTGCGCTGGCTGGAGAGGGAGCCGCCACTCAAGATCAAATAGTGGCGGGGCTTTGGCGGCCTGTGCGTGCCGCCGCGGGCTTAGTCAAAACAGGAAAAACTCCCAGCCAATCAGGAGGTAATACTGAACATGGCACTTTTCAGTCAGGCAGGGAGGGGTAACTGGAGGGAAGGAGTTAGGTAAAGTGATCTATCCAAGATTAATTCTATTCTCTTTGTTTTACTTATTACTACTTACATCACATGGAATACATATCTATTATATTCAGTATAATGCTGTCTGGCAAGCACATTTTTACTATTGAAAAGATTCTGAAAGGGAGAGCATAAGCCTTCATGcttggtctccctctctcctgtttcaTTCTGTCAAGTGTCTGCCTGATCCCACAGCATGAGCTGCCTGCATggccccctcaccccctccccccagtCTATCTAGGCCCACatggttagctagctatgttgtaCAGTTCACTCGTACTTTATATCCTTCCTTTTTTTTCCTGTTGCTTGATCAAGCGACTAGAAGAATGCCTGGCGGGCATCGTGAGGCTTGAGGTGTGGAGTTGACAGTGGCTTtactggagagaggggtgggggggtttgCTGCAACTAAAACTCCTACTGCAGTTCGCTAGGGCCAGCTTGGTGGACAGTGtcgtacagacacacacccagCCATCATCAAGCATCATTGAGTAGGCCTATGTCTGAAATAAGGTGCTGTTTAAGGGTGCTGTCCAGTAGTTCTTCGCCCCAAAGGCAATGTGGAACGCGGCCAGGTCCAAAGGTGCTGCTACAGCGTACACCTGTAGGGGGCGAGGCATacacagcagtgtgtgtgggcACTGCGAGTCCTTGGCTTTTAGATATCCTCACTGTCGTTTCTTGAAGCATAATCGTTGTCTCCCACCACCACTGTGTTGGCACAAGTGTACGGTTCTTCTAATGGAACAATACTATTGATATTTGTCCTGGTGGTTATTTTCTCACACCTGTCTGCCGGTGGCTCAAACTGGCTACAGAACAGGCACTTTAACTGTGCGTGCAGTttttgaagacacacacacactggttattGTCTCAGGGTCTGGTTTGTTTCTGGACCTGTGTTCTGCCTTCATGGtgtcccttatctctctctgtggcATCCTCTATGCTGCTCAGGGTTCATATAATTCATGTCTGCACCCTCCACAGACCATTGACATTATACAGTTAACTTGACTCCCCTTTACACATTACAGCCACAATCCCGCTTTATAGTATTAGTACCCGAAGGAGCAACATTTGATATGCGCATTGTCACTGCTGCTAGCCATGCCCGTAATAACCCAGCATATTGTGAGAGCTTGCATCAGGAAGACGAATACAACAAAGCGTAACCTATGTGCCTTTCATAGAGCCTCCTGATCTACTTTAAACTCTTGAGCCTGGTGCATAGAATACTCCAGCAGCACTTCCCACTCATGTAGCCCTTaaatggaggatgaggaggaggaaaatGAATGATGTGGAACAGGGGATGAAGAGCTCTGTTCATTGGTGCACATtcaatattttatatatatatatatatatatatatatatatatatatatatatatatatatttacatttttcacATTTCTATTTCATCAAGAAAATATtgtcaatgttagctagctagctagaagtGAATACACTACTCCATTGTCTAgctgtggaggctggtgggaggagctataggaggataggttcattgtaatggctggaagggAATTAATGGAGTCAGACTTGGTTCCCGTATCTTTGaggtgtttgataccgttccatttattccattccagcaataacaatgagcccgtcctccaaaAGCTCCTCCCAACAGCCGCCACTGCTGTCTAGAATAATTTATTGGCTTCACTTCCAAAAGTCATTGGGTTTTATAGGTGGCTGGATAGGTTGGGCAAGGCAGCGTCAGGTCCTGGAGGGCTTCTACACTGGACATGTTTTAGAACGGCACACCTAAAGCGACACACAGGCACGAGTCTGTAAAATctatggagaaaaaaaagataAGAAATGAGGAGTACCTGTATATGGAAATACTATCTGCAAATGTATACAAATATAATTCTTACAAATTATCGGTGTCATATCAGTGATTTTTATCCTGGTTGGATAGGTAACTTGAATCCCGTCTCTCTGAATGGCAGGGAATATGTTTATTTTAACTACCCAACacgcgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttaccagagGGGGAGGATCATGAATGAAAATGCAATGAATGCATATTATTAGCTTATTCATGACCATCTCTGAGTGTCTGTGACCAAAGCTCTGTTATTCAACGGTGTTGCACACAAGCTGCATTGTTTTTAGTAGTATTGCTCGCCACTATGTCTCTAGGGCTCTTTAAAATTACCATCCTGAATTTTATTTCAACTGAACAAACATTTTAAGCCTACAGGGCAGGCGATGTTGCCAGGTAGAAACAGAGACGAGCCCCCATCACCTTACACCTCTGTCTTGCAACTGCTCTGGCCTCTGCCAAGCCATTTTGTGCTACATTCACAATGTACTAATGAAAGGTAATGTTATGGTTTGGAGGCAGAAGGGCAGGAAAGGGTGTCATTGTCAATAGTATAATTGAGGCATGTGTGTGATAGTTAAATCAACTAGATGCTCTTTTTCatatccaaccctccctccctccctccctctctcttctgtggCCTAAACCCAATCAGACAGAACTTACTTTGTTTTCAGAAAGCTTGGAGATTGCATGTGAAAATCACCCATTTGTATGATCTATGAAGGGCTGTGGAGGACTGTTTGAAGGGGGAAAAAATAGGTTGACATATAAGTCACTTGCATGTGCACTTGTATGTTCTATATCCACATCCATGTCTGTCTATCACCCTGACATCTTGTATGGGATAGCTGTTAAAAATTCActctcctgcacacacacacctactctttgCCACCTGTCTATCATGCTACGGCGATGGCCTACTGGCACTAATCACTGGCTAAATGTACCTCACCAGGATCTACATTTACTGTGCTGTGCGCATAAAGGGCCACTGTGTTTCCTAATGGgtgcccctctctttctctgaccaCATCCTCAACATGACCCTGCTGATGCTGCTGGGATATGTGGAGGGGACTTAGGGGCTCTTGTTTATGCTGGTGGCTGCTTTCCCCTCCACGTTCTGCGGCCGCCCCAGCCCTGTTTGGGAGCTAGGCTAAAGTTAGCATTAAAAGAGAGTAGCGCCTTAGTCACACAATGTACCATTGAAGGCCCGGTTTCCTGCTGtgggaatggggggagagaggggggggtctaGGGATTTGTTGAAGTAATGGCACTTTAATTGTCTGTGCGCGTGTTTGTGTTTTATTTGTTCAAGGTGGAGATGTGGGTGTGAGTGGAGTATTTCATTTGTGTTCATACATCACAAGCAATGTTGGAGGACAGATTTATGATCTGTGGAGTTGcagactcgtgtgtgtgtgtgtgtgtgtgtggaccacatATTGGGGGTCTGGTGGAGGGGATGTGGAGTCTGCTGTGAGGGGTACCCCCCTATGAACAATGCCTCTTGTCCACCAATTCTCAGGCAGGCCCAATGTTAGGCTAGTTCCAGGATCTCTTCTCAACTTACTTGTTATAAATCTGAGACCGGCAGGTCATATCACCAGCCAACCCTGTTTGACCACATCACGACCCCTGGCCTGGATCAAGGTTTCAGCTCTTAGAGGAAAAATACAAGTTTTATTCTCATCTTTCCCCTATTTTTTTTGGAAAGCTGGGTAAAAATGCTATATGCAAACGAGGGGGGAAAAATGAAAAGATGTATGACTAAagaattattatttttcattATTCTTCTCCCTTATATGCAATGGAGTGTACTGTAACAATGGTCGCAATCCTCTTGTCACTTTAATGCTGTATGTGCACATCGGTTGCCATGTGGGTGCCATGGCAACAGGACTTGACAATGATGGGGACTAATGGTTGTCATTCTACAGCACCATTGTGTTCCCAGACTGCCTTATTCATTCTGACCAATCACGAGCCCTTTCATATCTGGGGCCGCAGGCACTGCcacagactttaaaaaaaaactctggTCAGACGAATATCGCCGTTCCAttattatagtttttttttttttactgttgtcAGGAAGGATTTGGAGAGTGCAAATGTTCACATTTCAATGTCTTTGTTATTCTGTGTATCTGCTTCACCATTCAGACAGTTGTTTCTTTCCATTATAACCTGTTCATTTTAAAGAGCCGTATGATGCGACACTTGTAGCTGTCACTCTTGGTGCTTGGCTTATGCTTCATTGTCTTAATATTCCAAATAAAACTGTTAAGCGTAAT
>TU79450
CAGGAACGACCACCACGGCCGAAGAGAAGTGTCGTCCAAGAGACCGAAAAGGGTTTCTGACTTTTATGTATCATTTTAAGAGTTTTTAATTAACATATACATTGTCTTATGTATTAGAAAGTCCATTCAGAATGACATTGAAAAGCGCCCGCGTACGTTTATGTGTTTCGTTCGACACCGTGGAACTCAAGGGGGATATGTGCCTGACTTGTCTTGATAGCCATTTTTTTGCAGACAAAGAGAACTGTTGAGTAGTGTTTATAAAAGACAAAAGGGTCTTGGTCTCCTATCCATGGAGAAAGTGGGCAAGATGTGGAGCAACCTGAGGAGCCGATGCCAGACCCTCTTCCACACCGACAGTGTGGGACCCAGTACAGAGAACAGCGTGGTGGAGGTGGACGGTATGCACTGTGTGGTGGACCTGGGACGGG

Function

symbol description
socs5 Enables receptor tyrosine kinase binding activity. Involved in negative regulation of epidermal growth factor-activated receptor activity and positive regulation of proteasomal ubiquitin-dependent protein catabolic process. Predicted to be located in cytosol. Predicted to be part of phosphatidylinositol 3-kinase complex.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608186.2 False 6657 mRNA 0.50 2 65068088 65120931
TU79450 True 431 lncRNA 0.47 2 65068384 65115001

Neighbor

gene id symbol gene type direction distance location
LOC110527002 rhoq coding upstream 26478 65021203 ~ 65041610 (+)
LOC110532561 LOC106576767 coding upstream 51403 64993070 ~ 65016685 (+)
LOC110526991 LOC106576769 coding upstream 83784 64972394 ~ 64984304 (+)
LOC110526969 stk32c coding upstream 121924 64809255 ~ 64946164 (+)
LOC110526912 LOC106576775 coding upstream 284351 64773915 ~ 64783737 (+)
prop1 LOC100192335 coding downstream 40727 65161658 ~ 65167877 (+)
LOC110527046 LOC106576764 coding downstream 52358 65173289 ~ 65221687 (+)
LOC110527082 epcam coding downstream 170777 65291708 ~ 65296104 (+)
thada LOC106576760 coding downstream 251368 65372299 ~ 65476515 (+)
LOC110527092 tisd coding downstream 358002 65478933 ~ 65482225 (+)
G71826 NA non-coding upstream 30507 65004285 ~ 65037581 (+)
G71654 NA non-coding upstream 76184 64987228 ~ 64991904 (+)
G71653 NA non-coding upstream 82799 64943334 ~ 64985289 (+)
G71779 NA non-coding upstream 135608 64905999 ~ 64932480 (+)
G71472 NA non-coding upstream 607719 64460165 ~ 64460369 (+)
G71935 NA non-coding downstream 73887 65194818 ~ 65256475 (+)
G71945 NA non-coding downstream 109233 65230164 ~ 65231403 (+)
G71997 plekhh2 non-coding downstream 206662 65327593 ~ 65328512 (+)
G72047 NA non-coding downstream 285499 65406430 ~ 65444673 (+)
G72812 NA non-coding downstream 442182 65563113 ~ 65563455 (+)
G70011 NA other upstream 1792792 63274963 ~ 63275296 (+)
G67930 mcmbp other upstream 3334700 61729765 ~ 61733388 (+)
G67806 LOC106581772 other upstream 3752836 61314874 ~ 61315252 (+)
G66188 NA other upstream 5126024 59941486 ~ 59942064 (+)
LOC110527164 LOC106576754 other downstream 794804 65915581 ~ 65922285 (+)
G73515 NA other downstream 1166748 66287679 ~ 66288469 (+)
LOC118965274 LOC106576739 other downstream 1299564 66417495 ~ 66424081 (+)
G74067 LOC106576735 other downstream 1635276 66756207 ~ 66758984 (+)
G74139 NA other downstream 1663404 66784335 ~ 66784969 (+)

Expression


Co-expression Network