prop1 (LOC100192335)



Basic Information


Item Value
gene id prop1
gene name LOC100192335
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 65161658 ~ 65167877 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021608196.2
aatccaacgttctaaccactaggctaccctgccgccccgtgacTAGGCCCagactcatctacaccaccatccctgacatgactaggcccagcctctgctGTCTGCATCTCAATGCCCCCTACACGTTGACCTCGATTTCTCCCACTGGCGCTTGTGCCCTCACCTTGTCTACGGCCTTTATGTGGGCACGCAAAGCTCTTATACCCCAAATCCTCACACTCAAAACACTGTAGACTATCTGTGCTAGCAAACCCTGCGTAGAGCCCTACGTAGAGCCCTCCCCATGCttcactttaaaatgcacatttagctgtTGCTCATTGTTATTCAGAAACACAAACACTTGCCTCCGGAATGAAACAACGTGCTTAATGGCATCTGTCTGAAAACCTGCCGACAGTACACGAAAACCGCTAGCACACTTACCAAAACGACTCAGCTCTTTCCTGATTGGGATCATCCGTAATGAACGGAGGCAAATTTGCAACTACCACCCTTGTCGAAGGGGTAGAAAGAGGTGAAATTGGCACCAACACACCCCGTACAAATATTCCACTAGCAATTAGCCTACCAACCAAATTTGCTCTTtgcatgaacacaaccacagctttgttcattctagaagcggaatgtataaattcagctcctacctgttcaccgactgcaagcagaacctcctccactttcactccattctcaggaacacacctgaatccatgtCGCAACGACATCCTCCGGGCTAGACTGAGAAGCCATCGCACACACCACACCTTCCAAACCCCAGGAAACTAACTCTatcctcttccaccctaactttgaaaaaaaCCTGTGCATACCGCTAAAACAAATAGTGCATTAACCCTCCACCAcagaaaataaaattgaaagAAAAGACCAAGGACAGAATCAAGAAAGTTAGTTAGGACAGAGCCTTCCACACCAAACACTCGAACTCCaaaaactcccagcatgcactgcgagagagagtgagagacagacggaTTGACGGGCAGGTGAGCGGATACATAGGCAAATTGAGTCAGTTGTTTAGGCCAGTGGTTGGGAACAGGAAAGATCAATGTGGGATCTGTAGAGCACAGACATACATGATGGTGAGAGGAGGCTCAGGCATCATTATGTCCTCAGAGACAATGAATGCACACATCCTTTTTTAAATCCAAGGAATCAAATGAGGCCTTTTTACATAAAGAGACATTTGAACAAGGAAAGGGACATTGTCAAGATAAGATCTTGAAGTTTATTCATTCTAACATGGATTTTTTGGGCAATTCAACAAGAGCTTTTCCATGCGAAAGCTGATCAGGTATTCAGTGGGTTTCATAATCCAGGTATCATGAGCAGTGTATAAAACCTCACAGGGGGTCATGCACGCTTATTGCAAGTTGTACAATGCATTATAACTGCAACATAATGCATTATTCCTGCAGGCTATGAAGTGTTACCCTTTTTTTCTGGGAATACAAACAATCCCTAGTCCCTACTACACCCTTACATGTCACCTCCTCAGATGTTATGTTTCTGACTCTTATTAATAAGTGCTTTGACGAGGATGACAACATCACATGGAGGTGAGATCAAATGTCCAATGATGACACCATTAAACAAGCAGGTTAAATGGGGATGTGCTACTTGAAGACTCTCTTGTacgtgtacacacagacacacctgtaCAGCTCCTGTGATGGCCCATACCATATAAATGTAAAGTATAATTTCTTTCGCTGAGTATAAATTGACATCGCTTGCCCACTAAAAGTTGCTGAATCGGCCTACATGCCCCCCTGTCATGACTTGGGTATATTTGGGACTCTGCCCAGTGTCCACTCATGTGAAAAGGCCATTCTTCTGCACTGGCCTGCGCCGAGTTTAGCATCATGGGAATGACTGCCAACACTGTCATACCAGCTCAATTCCCATGAGAAAACATTTGAGTTGAACCAAATAAAACGAACGGAAGGGAGTAGGGTCGTTTGAGATAACATgttgaaagaaagacagagacgtAGCTATGAAACTGTAATGTTTTACCTACAGCCTAATAAGTCAGgatgagagaggacaggagagtgtGCTGGGGAGGGAGACGAATCTGTACCAAAGAGCAGTCTCCCTAGCACACGCTCATGGACAGACGGTAAAGGTTGTGTTGCCACCTAGTGGACATAGGCACCATTGCAATTTCACTCAGAAAATGTCACTTAGTTTGTTTTATATGTCCTACTTGCACTTCAGTAATATTGTAAAGAAGTGAATGAATGCACACATCCTTTTTTAAATCCAAGGTAGATTATGGTATTATGCTCGATTGCATATAAAGAATAAACATGATAAATTAGAATACAGGATAGACATTTTCTATGAACATCATTTTCAATGGAATCAATCCCATAGACAAGCATAATGCTTTAATTCTTGTGACTCAGTGAGCACTTTGTCACTTTCGGTCTGCCTTGAGTAAATCTTGTAGCCCATGACCTTTTGTGACCTTACGTGACCTGAGAAGATACTTGAGGAAAGCCATAGCCAGGTAAATGTAGAGGTGGGTGGGAATGGCATGTGATGTCACGGCTAGACACGGTGGGAAAAGCAACAGGTAGCTCAATGTATGCTAGCGTTCCTGACTGTAGCATCACAGACCACACCTGTGAAGATGGCCCAGGTTAAGTCACCCGTGGATGGTGTCAAGAGTCAGCAGCAGCGTGCAGAGATGTACTCTGATATTACCATCGTCAGCTCCAGCGCAGATGTGGGCAGCCCAGCCAGAAAAGGCCCATTTGACAGTATGGCCCTAGGCCTCAGCAGGCGTGGGAGAGCCTACCCATCCCCAGCGCGCAGGCGCCATCGCACCACCTTCAGTCACAAGCAGCTGGACCAGCTGGAGATGGCGTTTGGACAGAACCACTACCCCGACATCTACTGCCGTGAGGAACTAGCGCGGCTCACCAAACTCAATGAGGCACGCATACAGGTATGGTTCCAAAATCGCCGTGCCAAATACCGCAGGCAGGAGCGTGCGTCTCAGAAGCTTTTGCCAATGGCCATGATGCCAGGGCACGGGGCACTGTTGGGCAGCATGTGTGTTCAGTCCACAGGGTTGACCCGTCAGTACTACCCTCACTCCCTGGCTCACCATATCCCCCGGTTCCCTTCTATGCTGCCCTCAGGTGGTTACTCCCACTCCCACCACCCAGGCTCAGCCAGCCAGTGTTCCTGCCCCACAGTCCCACCAGAGCCACAACCCCCCCGCCAGCACGAGGAGTGGTACAGCCCACTACGGAACATTGGAGCCCCACCCAGCAACCTGGCCACACCTGTGTTCTCCCTGACCTCCATGCCTGCTCTAGACCCTGGCTCTCACTGGAACTAAAGAAAGAGTAACTTCTACGTCGGGAAGTAGACAAGCTCTTATAGGCTGTGTCTCGAACAACTAACAGTTATTCATTGCACCTTAGATTAGAtgacaaaatatagttttttgtATCTATACAGTGATAGCTAGTAACTAGAGAACAGGAAGAATTTAGAGAATAGTGAGAATGACTAAACTCCTTCTCCCATTGAATACCTGACGTTGCATGTTTTCTTGAAAGTTCAGGGTAGCCTAACTGAGAGAAAGACATTTGCGGGTAGTCTTGAATTATCCATATAGATGGTCTGAAATATATACTATACATCTTTCTAACGCCTTTTATATTTTCACAGTAAATAAAGTAGTGTGTATTGGGA

Function


NR:

description
homeobox protein prophet of Pit-1-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021608196.2 True 3747 mRNA 0.46 3 65161658 65167877

Neighbor


gene id symbol gene type direction distance location
LOC110527013 socs5 coding upstream 40727 65068088 ~ 65120931 (+)
LOC110527002 rhoq coding upstream 120048 65021203 ~ 65041610 (+)
LOC110532561 LOC106576767 coding upstream 144973 64993070 ~ 65016685 (+)
LOC110526991 LOC106576769 coding upstream 177354 64972394 ~ 64984304 (+)
LOC110526969 stk32c coding upstream 215494 64809255 ~ 64946164 (+)
LOC110527046 LOC106576764 coding downstream 5412 65173289 ~ 65221687 (+)
LOC110527082 epcam coding downstream 123831 65291708 ~ 65296104 (+)
thada LOC106576760 coding downstream 204422 65372299 ~ 65476515 (+)
LOC110527092 tisd coding downstream 311056 65478933 ~ 65482225 (+)
LOC110527114 LOC106576759 coding downstream 512147 65680024 ~ 65697328 (+)
G71826 NA non-coding upstream 124077 65004285 ~ 65037581 (+)
G71654 NA non-coding upstream 169754 64987228 ~ 64991904 (+)
G71653 NA non-coding upstream 176369 64943334 ~ 64985289 (+)
G71779 NA non-coding upstream 229178 64905999 ~ 64932480 (+)
G71935 NA non-coding downstream 26941 65194818 ~ 65256475 (+)
G71945 NA non-coding downstream 62287 65230164 ~ 65231403 (+)
G71997 plekhh2 non-coding downstream 159716 65327593 ~ 65328512 (+)
G72047 NA non-coding downstream 238553 65406430 ~ 65444673 (+)
G72812 NA non-coding downstream 395236 65563113 ~ 65563455 (+)
G70011 NA other upstream 1886362 63274963 ~ 63275296 (+)
G67930 mcmbp other upstream 3428270 61729765 ~ 61733388 (+)
G67806 LOC106581772 other upstream 3846406 61314874 ~ 61315252 (+)
G66188 NA other upstream 5219594 59941486 ~ 59942064 (+)
LOC110527164 LOC106576754 other downstream 747858 65915581 ~ 65922285 (+)
G73515 NA other downstream 1119802 66287679 ~ 66288469 (+)
LOC118965274 LOC106576739 other downstream 1252618 66417495 ~ 66424081 (+)
G74067 LOC106576735 other downstream 1588330 66756207 ~ 66758984 (+)
G74139 NA other downstream 1616458 66784335 ~ 66784969 (+)

Expression



Co-expression Network