mcfd2 (mcfd2)


Basic Information

Item Value
gene id mcfd2
gene name mcfd2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 65168842 ~ 65171950 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608207.2
AAAATGCCGATATCCAATCAGAATTTAGCTGTCGTGTCCGTGAGTTGAAAGGTGACTACGGCTCACAGTAATGCCCAAAAAGGTTGAAGAAAATACATGTAGTTAATTTACAAGCGAACTATTCCAAGTCTGTTTGTCAACTGttACTGTACAGCCCAGAATGGTGTTAAGAGTAAGTAGCAAGAGGAGCGTGGTGTGGGGCTGGCTACTCCTGGTCTCCTGCTTTCTGCTGTCTGTTCGTTCACATGAGCAGGCAGCCCACGAACACCCACCGGAGAGTCACCGTCCTAACATGCACCTGGACAAGAACATGGTCCATGACAGAGAACACATCATGGAGCATCTGGAAGGTGTGATTGACAAGCCGGAGTCGGATATGTCGCcgcaggagctgcagttgcaCTACTTTAAGATGCACGACTATGATGGCAACAACTTACTGGATGGGCTGGAGTTGGCCACAGCCATCACTCATGTGCACAAAGAGGAAAAAGGAGAGGATAGCCAGCCTATGAAAGAGGAGGACCTCACAAGCCTTATAGATGATGTTCTGAGGGACAATGACAAAAACAACGACGGGTACATAGACTACGCCGAGTTTGCCAGGTCTCTGGAGTAGAGGAGAGACGGTGCCTAACTATTGGGGTCTGGCTCCGTGCACtgcacaccaccacaccactttCTCCACCACACAACGTTAATTTACCTGAGCCGGTGTCCATGTCTCACGCTCTCTGTGGGGCTATCACTATCCTTCATCCGTCCAGACAGCATCTATACCAGAGGTGGGCAAACGTCTTGGCTTGAGGGCCACATTGGGATTTTTCGAAATTCAACGGAGGGTCACACAGATTTTGTTTTGACCAATTTTTGTTTGTCAAAACTTATTTGCGGGTCAGAAAAAGGGCAGTCATTTGAAACTATTTAGGTCCGTTATCATTTCTACATACTTTCTATCTAGTTTTAGAAGTTCAAGTGTGACCTGCAGTTTTTAACCCCCGTCCCCCAAAACAAAATAAATGGGTTTTACTCAAAACTCCTGTGGGCCAGATTGAAAGGTTTGCCCAGCCctgatatatatacacagtagattATTCAATTATTACTGTAATTATTAAACTGCCAATTGTGTCTACTGTATGCTAGCAACTAAACTAGTTCAGTCATGTTAGAATGAAATTCTTGAGCAGGTATTTACCTAAGTGCTGCTTTGCTGTATAAAATCCAGGATTATGGACCAAAGGTTTTGATATTTATGCATCCAATCATGTTAGGCCATTTATGACAACTGCCTGTGGTCCTTAACTTTAAGAGTGGCCTTTACTACTACTGCACCATTCTTGTACTATTTACTCATAGTGGGAATGTTACAGCCCGGATGCAGTATACTGTACCACAGAGTATGTGGGAGTGTGGGAATGGCAAAGCAGGTCTGGAGGATTTGTCTGACGCTCAGAAACGAGCCATGAACAGGCCTGCTTTCAGTTGGAACAAAATGGAAGACAGTGTTTAGAAACGGAGGCGGTAATACCTGGGCTAAGTCCTACTGCTCATTCTTGTTTTCAAAAACGCTTTCTCCCATTTGTTCGAACCGAATGCGACTCAGGTAACATAAAAGCCACACTTGGTACGGGTTTGGTTCTGGTCAGACACAGTTAATCACAAATCATTTTTCTGCTGATCCACACGTACTTTACATCCCTTACATAGTCTGTTACCCACCAACCTGAACGCACAATTCGGCTTACAGCAGGGCTGATACTTGAGATGAACAGAATCCAAATTTTAATACAGAAGATGTGTTGTGGTGCGCATTGTGATTTCTTCATCACTGGATTCACTTTGACTTATAGCACAGTGAGACCTCTGGGTGACAGGAATACTGAAGGGTTAACTTAATTGTACAGATGTGCTATAAGTAGAATGCAGGGTTATGTTGCTATAAATGCTATTGAAGTAATGATGTTACATTATGTGTAGTTAGACCACACTTGATTCTTTCCAATTGAGCTCCATTGCTGTCAAACAGTTACAGATCATTAGGTTACCAGGTCTTTATGCTATAAGGCCCAGGTCTATATTCAACCCATTTATAATACTTCCAAATGAATACTGAAACTTTATTTGTTACAAAAGAGTTCTAATTTCATCATTCAGTGAGGTTGTTCGGTGAATACAGGTTACTTGAATAGAAATGTGTTATTAAAATCTATAAAATGACAAGAGTAGTAGACACATGCAACTGTGTTGTCTTTGTAATATGCTGCAATAAACAAATATATGAATGTC

Function

symbol description
mcfd2 Predicted to enable calcium ion binding activity. Orthologous to human MCFD2 (multiple coagulation factor deficiency 2, ER cargo receptor complex subunit).

NR:

description
PREDICTED: multiple coagulation factor deficiency protein 2 isoform X1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K20364 MCFD2; multiple coagulation factor deficiency protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608207.2 True 2289 mRNA 0.42 4 65168842 65171950
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Neighbor

gene id symbol gene type direction distance location
LOC118964437 NA coding downstream 104045 65063280 ~ 65064797 (-)
LOC110526980 LOC106576770 coding downstream 211170 64951842 ~ 64957672 (-)
LOC110526944 lrrc27 coding downstream 359213 64802392 ~ 64809629 (-)
LOC110526927 LOC106576773 coding downstream 367182 64792360 ~ 64801660 (-)
LOC110526894 LOC106605012 coding downstream 433261 64472402 ~ 64735581 (-)
stpg4 cssa18h2orf61 coding upstream 58107 65230057 ~ 65235096 (-)
calm2a LOC107561747 coding upstream 68306 65240256 ~ 65245210 (-)
si:ch73-105b23.6 LOC106576763 coding upstream 91331 65263281 ~ 65287052 (-)
plekhh2 plekhh2 coding upstream 129735 65301685 ~ 65372123 (-)
LOC118966709 NA coding upstream 348584 65520534 ~ 65551007 (-)
G72530 NA non-coding downstream 73954 65092897 ~ 65094888 (-)
G72523 NA non-coding downstream 74347 65086215 ~ 65094495 (-)
G72455 NA non-coding downstream 172173 64996203 ~ 64996669 (-)
G72454 NA non-coding downstream 175787 64992572 ~ 64993055 (-)
G72402 NA non-coding downstream 177494 64985226 ~ 64991348 (-)
G72595 NA non-coding upstream 23306 65195256 ~ 65198584 (-)
G72610 NA non-coding upstream 53149 65225099 ~ 65226040 (-)
G72636 NA non-coding upstream 119784 65291734 ~ 65292022 (-)
G72639 NA non-coding upstream 123272 65295222 ~ 65296093 (-)
G72648 NA non-coding upstream 147854 65319804 ~ 65320210 (-)
LOC110526867 LOC100136521 other downstream 787486 64369803 ~ 64384521 (-)
G70013 NA other downstream 1891090 63277208 ~ 63277752 (-)
G69210 NA other downstream 2750546 62411522 ~ 62418296 (-)
LOC110526417 LOC106576819 other downstream 3186447 61981652 ~ 61983330 (-)
G68736 NA other downstream 3482534 61682278 ~ 61686308 (-)
tjap1 tjap1 other upstream 1646894 66806836 ~ 66883731 (-)
LOC110527436 ppp2r5d other upstream 1822732 66965664 ~ 67010646 (-)
LOC110527584 LOC106576720 other upstream 2214559 67386509 ~ 67389299 (-)
LOC110527687 sncg other upstream 2497639 67669589 ~ 67681775 (-)
sdhaf4 LOC106576700 other upstream 2986011 68157900 ~ 68162024 (-)

Expression

mcfd2(mcfd2) Expression in all Baseline Samples

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mcfd2(mcfd2) Expression in each Bioproject

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mcfd2(mcfd2) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 4000.
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Co-expression Network