LOC110527164 (LOC106576754)


Basic Information

Item Value
gene id LOC110527164
gene name LOC106576754
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 65915581 ~ 65922285 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608309.2
aagggttaattTAAATGAAGAAAACATATTACACTTTTGACGttcatttgacaaaagctggaccGTTTAATAGTGCCTACAAAAAGCCGCCATTATCACTCTATTCTAATCAGGCACCACTGAGCCAACCTGCTGTGTCGTTAATGTTGGGTCCATCCTCTCTGCATGTTTGGCCAACAAGGGGACATCCGTGATCCGACCTCATTCGtaactgttgtttttgttttgtaaccAAGTAAAATGTACTACAAGTTAAATGGAGTTACACAAAGACTTGCTGGATCGGCACCGAGTGCGTACAGCCCTCAGGGGTTGAGGGTAACAGTGCCCATGGAGGCCCCTCCAATGATCTTTGCCACCCCCACCAAATATGTGTCGGAGGCAGGGAACACAGTGGAGTACCTGGGACACAACAAAGTCCCTGACCTACAGAAACTCTTCCAGAAGTCTGACGGTATCCCTGTGCACCTGAAGAGAGGCCTGATGGACAAGATGCTGTACAGGACCACCATGGGCCTGACCATTGGAGGGACCCTCTACTGCCTGATGGCTCTCTACATAGCTGCCCAGCCAAGGAAGTGATCTGCTTATCCAGCCTCTTCCCCTTCAAGGTTCCAACAGGATTCTATATGATTAGGAGCAATAATGTGGATGATGATTGTGCTCAGACGGTCAAGGAAAGGAATCCCTTTACTCTCAATTATATGTCCCCTTATCTTATTGATATGCCTAGTTTCATGTTGAGGTTTTCATCAGACTCAAATAATCTATACTTTGTCAAATTTAAGTCCATGTCATATCACTACTTGCCCTATCTCACTTGCTCTGTGTTCTTGTGCAAGTTGTGCATTTCCGCATGTATATCTCTGCTGATGTCTCGGTAACAACCAGCACCATATTAGTGGTACATAACTATGATGGCTAGAGTATCaacaatctacatttttaaaaagtctgACCATGTTTTCTGCCAGAGcactcccctgtgtgtgtggaaAGAAGTTGAGGTCTCATGACATGGATGACTTTGGGTGCTCATAACATGGATGACTTTGGGTGCTCTTTTGTTCTGGGCGAGAGGGTGGATGGGGCTAGCACCTTTTTTCAAAGCTAATAATGAGGTGGTACTTCAGGTTGTGTGATATCATTCATTGGTTTCTTTCTGTATTAAACTCTGCTTTTGAGAAGTCACATCTGCATTACCTTATTTGCATGCCCCCCCCAAGTCCCTATTTTTATGGTGCAGAGGTTGTTGTCATTTAGTCTGCATACTAACTGACGGTgttctgtaaaaaaaaagaaagggagTGCACAGAGTATCTGACAAGTCATTGTAATTTTGTCTTGGGATAATAAAAGTAtattttgtttaaaaca
>TU80728
ATCCTCTCTGCATGTTTGGCCAACAAGGGGACATCCGTGATCCGACCTCATTCGtaactgttgtttttgttttgtaaccAAGTAAAATGTACTACAAGTTAAATGGAGTTACACAAAGACTTGCTGGATCGGCACCGAGTGCGTACAGCCCTCAGGGGTTGAGGGTAACAGTGCCCATGGAGGCCCCTCCAATGATCTTTGCCACCCCCACCAAATATGTGTCGGAGGCAGGGAACACAGTGGAGTACCTGGGACACAACAAAGTCCCTGACCTACAGAAACTCTTCCAGAAGTCTGACGGTATCCCTGTGCACCTGAAGAGAGGCCTGATGGACAAGATGCTGTACAGGACCACCATGGGCCTGACCATTGGAGGGACCCTCTACTGCCTGATGGCTCTCTACATAGCTGCCCAGCCAAGGAAGTGATCTGCTTATCCAGCCTCTTCCCCTTCAAGGTTCCAACAGGATTCTATATGATTAGGAGCAATAATGTGGATGATGATTGTGCTCAGACGGTCAAGGAAAGGAATCCCTTTACTCTCAATTATATGTCCCCTTATCTTATTGATATGCCTAGTTTCATGTTGAGGTTTTCATCAGACTCAAATAATCTATACTTTGTCAAATTTAAGTCCATGTCATATCACTACTTGCCCTATCTCACTTGCTCTGTGTTCTTGTGCAAGTTGTGCATTTCCGCATGTATATCTCTGCTGATGTCTCGGTAACAACCAGCACCATATTAGTGGTACATAACTATGATGGCTAGAGTATCaacaatctacatttttaaaaagtctgACCATGTTTTCTGCCAGAGcactcccctgtgtgtgtggaaAGAAGTTGAGGTCTCATGACATGGATGACTTTGGGTGCTCATAACATGGATGACTTTGGGTGCTCTTTTGTTCTGGGCGAGAGGGTGGATGGGGCTAGCACCTTTTTTCAAAGCTAATAATGAGGTGGTACTTCAGGTTGTGTGATATCATTCATTGGTTTCTTTCTGTATTAAACTCTGCTTTTGAGAAGTCACATCTGCATTACCTTATTTGCATGCCCCCCCCAAGTCCCTATTTTTATGGTGCAGAGGTTGTTGTCATTTAGTCTGCATACTAACTGACGGTgttctgtaaaaaaaaagaaagggagTGCACAGAGTATCTGACAAGTCATTGTAATTTTGTCTTGGGATAATAAAAGTAtattttgtttaaaaca
>TU80729
ATCCTCTCTGCATGTTTGGCCAACAAGGGGACATCCGTGATCCGACCTCATTCGtaactgttgtttttgttttgtaaccAAGTAAAATGTACTACAAGTTAAATGGAGTTACACAAAGACTTGCTGGATCGGCACCGAGTGCGTACAGCCCTCAGGGGTTGAGGGTAACAGTGCCCATGGAGGCCCCTCCAATGATCTTTGCCACCCCCACCAAATATGTGTCGGAGGCAGGGAACACAGTGGAGTACCTGGGACACAACAAAGTCCCTGACCTACAGAAACTCTTCCAGAAGTCTGACGGTATCCCTGTGCACCTGAAGAGAGGCCTGATGGACAAGATGCTGTACAGGACCACCATGGGCCTGACCATTGGAGGGACCCTCTACTGCCTGATGGCTCTCTACATAGCTGCCCAGCCAAGGAAGTGATCTGCTTATCCAGCCTCTTCCCCTTCAAGGTTCCAACAGGATTCTATATGATTAGGAGCAATAATGTGGATGATGATTGTGCTCAGACGGTCAAGGAAAGGAATCCCTTTACTCTCAATTATATGTCCCCTTATCTTATTGATATGCCTAGTTTCATGTTGAGGTTTTCATCAGACTCAAATAATCTATACTTTGTCAAATTTAAGTCCATGTCATATCACTACTTGCCCTATCTCACTTGCTCTGTGTTCTTGTGCAAGTTGTGCATTTCCGCATGTATATCTCTGCTGATGTCTCGGTAACAACCAGCACCATATTAGTGGTACATAACTATGATGGCTAGAGTATCaacaatctacatttttaaaaagtctgACCATGTTTTCTGCCAGAGcactcccctgtgtgtgtggaaAGAAGTTGAGGTCTCATGACATGGATGACTTTGGGTGCTCTTTTGTTCTGGGCGAGAGGGTGGATGGGGCTAGCACCTTTTTTCAAAGCTAATAATGAGGTGGTACTTCAGGTTGTGTGATATCATTCATTGGTTTCTTTCTGTATTAAACTCTGCTTTTGAGAAGTCACATCTGCATTACCTTATTTGCATGCCCCCCCCAAGTCCCTATTTTTATGGTGCAGAGGTTGTTGTCATTTAGTCTGCATACTAACTGACGGTgttctgtaaaaaaaaagaaagggagTGCACAGAGTATCTGACAAGTCATTGTAATTTTGTCTTGGGATAATAAAAGTAtattttgtttaaaaca

Function

NR:

description
cytochrome c oxidase subunit 7A-related protein, mitochondrial-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608309.2 False 1377 mRNA 0.43 3 65915581 65922285
TU80728 False 1223 TUCP 0.44 3 65915735 65922285
TU80729 True 1198 TUCP 0.44 4 65915735 65922285

Neighbor

gene id symbol gene type direction distance location
LOC110527154 LOC106576753 coding upstream 4046 65898427 ~ 65911535 (+)
hcar1-3 LOC106576755 coding upstream 86838 65826347 ~ 65828743 (+)
LOC110527123 NA coding upstream 116179 65794987 ~ 65799491 (+)
LOC110527114 LOC106576759 coding upstream 218253 65680024 ~ 65697328 (+)
LOC110527092 tisd coding upstream 433356 65478933 ~ 65482225 (+)
LOC110532572 LOC106576752 coding downstream 71583 65993868 ~ 65999848 (+)
LOC110527177 LOC106576750 coding downstream 77972 66000257 ~ 66003340 (+)
wu:fj16a03 LOC100135970 coding downstream 91900 66014081 ~ 66019044 (+)
prph2b LOC106576743 coding downstream 429126 66351411 ~ 66355894 (+)
LOC118965274 LOC106576739 coding downstream 495210 66417495 ~ 66424081 (+)
G72960 NA non-coding upstream 83973 65831379 ~ 65831608 (+)
G72954 NA non-coding upstream 109296 65805959 ~ 65806285 (+)
G72858 LOC100136012 non-coding upstream 179717 65686749 ~ 65735864 (+)
G72866 NA non-coding upstream 253279 65657325 ~ 65662302 (+)
G73321 NA non-coding downstream 59384 65981669 ~ 65981892 (+)
G73334 NA non-coding downstream 83748 66006033 ~ 66006238 (+)
G73311 LOC106576750 non-coding downstream 90592 66012877 ~ 66013340 (+)
G73488 NA non-coding downstream 330836 66253121 ~ 66253342 (+)
LOC110526969 stk32c other upstream 1013957 64809255 ~ 64946164 (+)
G70011 NA other upstream 2640285 63274963 ~ 63275296 (+)
G67930 mcmbp other upstream 4182193 61729765 ~ 61733388 (+)
G67806 LOC106581772 other upstream 4600329 61314874 ~ 61315252 (+)
G66188 NA other upstream 5973517 59941486 ~ 59942064 (+)
G73515 NA other downstream 365394 66287679 ~ 66288469 (+)
G74067 LOC106576735 other downstream 833922 66756207 ~ 66758984 (+)
G74139 NA other downstream 862050 66784335 ~ 66784969 (+)
G75747 NA other downstream 2452220 68374505 ~ 68374929 (+)

Expression


Co-expression Network