wu:fj16a03 (LOC100135970)


Basic Information

Item Value
gene id wu:fj16a03
gene name LOC100135970
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 66014081 ~ 66019044 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124310.1
TATTCGCTGCTAAGAGAAGTCTTCGACTGAGACCAACAATGAGAGCCTACCTGGTCCTGCTTCTGCTGCTCCCTCTCTGCACAGCCGACTACAACATTGAATGTTACGGCGAGGACTTCCTGATGCTGAGGAACCAGCTCCTACAGTGCTCAAGCAGAACACAGCAGGCCTGCTACACCAGGAAGACTGGGGAGAAGGGCTGTGCTCGGCTGGAGTTGTGCTCTCGATCAGGCTGGAAGTGCTGCTATGAGGACCGCTGCAATGCCTAGAGCTGATTCCAGGGGACACTAACTCCACGGCCCAGGAAAGGCAGAGGACGAAGAGCTGTGATATCAGCCGACAGCAATTTGCTGTTTAGCACTTGGTGAATGGAATGTGTTTGTATAAATAACGTGACAAAAATAACTTTAATTTGATGTAAAGTCACATGAAATAAAGTCCTACGAAATTGTAA
>TU81037
GCCGTGCCTGTCattgtgtgggtgtctgtgttcctgtctgagCACACGACACAGTATAAAAGCAGAGGGGCTCTCTGCCCCTCCAACACTTTGAACCTCAGACTTATTCGCTGCTAAGAGAAGTCTTCGACTGAGACCAACAATGAGAGCCTACCTGGTCCTGCTTCTGCTGCTCCCTCTCTGCACAGCCGACTACAACATTGAATGTTACGGCGAGGACTTCCTGATGCTGAGGAACCAGCTCCTACAGTGCTCAAGCAGAACACAGCAGGCCTGCTACACCAGGAAGACTGGGGAGAAGGGCTGTGCTCGGCTGGAGTTGTGCTCTCGATCAGGCTGGAAGTGCTGCTATGAGGACCGCTGCAATGCCTAGAGCTGATTCCAGGGGACACTAACTCCACGGCCCAGGAAAGGCAGAGGACGAAGAGCTGTGATATCAGCCGACAGCAATTTGCTGTTTAGCACTTGGTGAATGGAATGTGTTTGTATAAATAACGTGACAAAAATAACTTTAATTTGATGTAAAGTCACATGAAATAAAGTCCTACGAAATTGTAACCACCC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106605369 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124310.1 False 454 mRNA 0.49 3 66014185 66019038
TU81037 True 564 lncRNA 0.50 3 66014081 66019044

Neighbor

gene id symbol gene type direction distance location
LOC110527177 LOC106576750 coding upstream 10845 66000257 ~ 66003340 (+)
LOC110532572 LOC106576752 coding upstream 14337 65993868 ~ 65999848 (+)
LOC110527164 LOC106576754 coding upstream 91900 65915581 ~ 65922285 (+)
LOC110527154 LOC106576753 coding upstream 102650 65898427 ~ 65911535 (+)
hcar1-3 LOC106576755 coding upstream 185442 65826347 ~ 65828743 (+)
prph2b LOC106576743 coding downstream 332373 66351411 ~ 66355894 (+)
LOC118965274 LOC106576739 coding downstream 398457 66417495 ~ 66424081 (+)
LOC110527255 LOC106576738 coding downstream 531225 66550263 ~ 66567928 (+)
LOC110527278 qki coding downstream 619887 66638925 ~ 66734658 (+)
yipf3 yipf3 coding downstream 755830 66774868 ~ 66783655 (+)
G73311 LOC106576750 non-coding upstream 845 66012877 ~ 66013340 (+)
G73334 NA non-coding upstream 7947 66006033 ~ 66006238 (+)
G73321 NA non-coding upstream 32293 65981669 ~ 65981892 (+)
G72960 NA non-coding upstream 182577 65831379 ~ 65831608 (+)
G72954 NA non-coding upstream 207900 65805959 ~ 65806285 (+)
G73488 NA non-coding downstream 234083 66253121 ~ 66253342 (+)
G73492 NA non-coding downstream 237056 66256094 ~ 66256316 (+)
G73496 NA non-coding downstream 242056 66261094 ~ 66261593 (+)
G73501 NA non-coding downstream 249547 66268585 ~ 66268984 (+)
G73526 NA non-coding downstream 292428 66311466 ~ 66347388 (+)
LOC110526969 stk32c other upstream 1112561 64809255 ~ 64946164 (+)
G70011 NA other upstream 2738889 63274963 ~ 63275296 (+)
G67930 mcmbp other upstream 4280797 61729765 ~ 61733388 (+)
G67806 LOC106581772 other upstream 4698933 61314874 ~ 61315252 (+)
G73515 NA other downstream 268641 66287679 ~ 66288469 (+)
G74067 LOC106576735 other downstream 737169 66756207 ~ 66758984 (+)
G74139 NA other downstream 765297 66784335 ~ 66784969 (+)
G75747 NA other downstream 2355467 68374505 ~ 68374929 (+)

Expression


Co-expression Network