pkdcca (LOC106576746)


Basic Information

Item Value
gene id pkdcca
gene name LOC106576746
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 66215269 ~ 66250722 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608363.2
CTACAGAAGTGGTGGGTTTTGCAGTGTGTGAAGGCAAGTGTCACCATGGTCAACCTTATATGGGGAGGATCTTAAACCTGCGTGGCTGCATAAATCATATAATTCAAGATGAAGACGTGATCATAGCGCATTCGGCATCGGAATACCATTAAGTTCTGTCGCGCACGAACCTTGAACGCCGGGCACCGCTGCAGAGGTGGTAGACACTTAGGCGGGGGCTGGAGCCGAAGACGGACAAATATATTTTATGCTATTAATACAACTAATCACAATGAAGCGAAGAAAGATTGTGGTTGCAGCAGGcttctgcctctctttcttcctcgGTACGCTAATGAATTTGCTGTACATACCAGGGTTCGAGCACCATCAGAACCACGACAATAGAGTACATCGGTACTATCACAAAAAACAGCAGCGGGTTACAGGCGATTCACAGCTTCACGTCGGCGAGTCAGACACTAAAGCTGTGGCGGAGTCCAATAGTAAAAACGCCGCGGGAAGCAGGCATCACCAGGACTTATTACTGCAGATACGAGAGAGATTCGATGAGGTTGTGCGGTACCGTCGGCGCCAGGGACATGGGTCTGGGACCGGGGACCCCGTCCGCCCGCTGGAGAGAAGGAGGCTCATGGATTCAGAGCCAGGGGACAATTGGGACCCTATCAAAGTCATTGAGCGAACCGATAACCAACAGACGCATTTTCAAAATCGGCTTTCATCTTCCACATACATGCAAACAAAATCACGGAAAGATTTAACTATGAATTCGAGGAGCATTAACAGTACACCTATGCTTGACTGCAGCAGCATAGACAACGTGACCAACATTCAGTACCTCGGCTCAGGCTACACAAAGGCTGTCTACAAGGCGACTCTCAACAACAGCTTGTCCGTGGCTCTGAAATCGGTGGATTTCGGGGGACACGATATGGAAAATTGCGTAAAGAAATATGGTTCACCTGGAGACTGCTACAGACTGGCGTCCTTCAAAATAGTGAAAGAAATGACGCTAATGGAAAGGCTACAGCACCCTAACATTCTGAAGTTGTATGGTTACTGCTACCAGGATAGCAATGACATCCAGGACACAGTGACAGCCATTACAGAGCTCGGTAGTCCTCTGGAGATGATCCAACTACTGCAGACCTCCTGGGAGGAACGCTTCAGGATCTGTCTGAGTCTGGTACGTCTTCTCCACTACCTGGCCCACTCTCCTCTAGGCTCTGTCACCCTGCTGGACTTCAGACCACGCCAGTTTGTCTTGGTGGCGGGGGAGCTCAAAGTCACTGACCTGGACGACGCCAGCACCGAGGAGGCCCCTTGCTCACCCTCCTCCACCTCAGACTGCGTCATGGAGTTTCCCGCCCGCAACTTCACCCTCCCCTGCAGCAGAGGCCGCTGCCTGGGCATCAACGAGAAGCGCAATCTCTACAACGCCTATAGGTTCTTTTTCACCTACCTGCTGCCTCACAGTGCCCCGCCCACTCTAAGACCCCTACTGGACAAGATAGTTAACTCCACAGGAGAGCTGATATGGGGGATAGATGAGACACTACTTCAGTTGGAGGAAGTGTTGCACCTGTACAGAAATGGATtttacctacagaacagcacaCAGACGCACAGAGCAGACTATAAGCGTGTAGTGGATGCCTCTATTCCCGGGGAGAACTACCGCTGCTGGCCATCCTATCAGCACGATGGATGTCTGCTGTCAGTCTACAGCATCACAGAGGCTATTGGTGTATGTGAGAGCCACGCCCAGTGCCGAGCATTTGTACTGACCAATCAGACAACCTGGACAGGTCACCAGCTTGTATTCTTCAAGACAGGCCCTGCCAGTCTAAACTCTGCCAAAGGACAGGTCACCTACGTCAGAGTGGGCAGCTGAAccaaaggagagggaggagacttAACTACCAAACCTTCCTCTGATTGGCTAACCTGATCCTGGGGCATGCCCTCACAGAATAGTGAGCCACCCCATTGGATGGGTCGGGCAGAGGGAGTGTAAGATGGATCCTAGACCACGCCCTCCAGTGTGAACTTCCACGGGCCATAAAGAAGGCTAACCCAAACCAGCTCCTGCTGAAGTGCAATAATAACTCAAGGAGAACATTTATCGTAACATAGATGTTGATGATCTGTCCTCCATTCAATGCTTAAACGTGACTATTTTTCGGGTTGTGCAGATTTTTAGCTCAGGGTATGCTGAGGTTACCCTCCTAGCTAAGAGGGGTGAGAATGTACCCCTGTGGTCAAATGCCCCTCCTGTGCCCCCTAAACTACCTTCACATATCTGGTCAAAAGGATCTCCTTCTGGTACTGTAGAGTGTTTAATCATCATTCTGTGAAGGTTTCGAGGCGGCCTCAGTACGAACCATCAGCCAACCATCGAACCATAGGAAAGGTACTCAACAAACACATTCCAGAAAAACTTCCAAATTAGTGTTGggttcaatctgtatcgctgaaggTCAGTGCTATAGCGTGATTTACATGGAAAGGCCGTGTTCCCGCGTGAGCGGAGATTGCATTCCCGGTAAAGGCTgcgtatgtcggctcaatcggaaattacctttacattttagCGATACAGACTGAATCGAGCCCTAGGACTTGTTCAATAGTGCGTCTCCATGCCATGTTCAGGCTTTATTCTAAGGTTCAGGCTTTATTCTAAGGTTCAGGCTTTATTCTAAGGTTCAGGCTTTATTCTAAGGTTCAGGCTTTAACAAAGGTATTGGCAAAGGACGGATGTTCCAGTGTTACTGTGACGTCTTAGTCAGTGAATAagctcttgttttttttttattctccgacgtctctctctctctctatttcctttcCCTTCCTCGGTCTTGTGTTAGATCCACAGCACTTTCGATTAAGTCAAACAGGGGTTCTCTATGCTTTCAAAAAGCAACTCAATAAGCGATCGATTTCCACGTCTTGGTGGCTGAAGAATCTGTTCTTATAGAACAGGGGATTGTAACAGCTGAGTTATCAGATCAAATATCTTTTATTTCAATCCTATGTTGATGAACACAAAGGCATTGTTCTCGTATGGAAAAATCATGGACTTGTTTGGAATATTGTGTCATTGTTGATTTTGCATGTTGACcaaatgtaatgtagtgtagtgaccTCCTTGAGAGGGTCACTTTTTTGATCATTTTGTATTTATTGAGGACAGTGTGTGTTGGCTCCTGTCCCACTCCTGGGTCgcgttcattaggcaccaaacggaagaaaaggGACTAAAACAGGAAGGGATTACCCAAACTTGTCCAAAATAAATTCTAATTTtcgttttctgttgcaaaacgctTTGCAATGGTTtgccctaatgaatatgaccctgggTTTAGAGCAAACACAGCAGGAAGTAATCTCCATCTATTCTAATTTCCTAAGGAAATGTGACATGAACCTTTAGATAAATAATCAGACAAGTATCAAAGAGCTCTTGCTTTCAGTGAAAGCAGAACATTGTGAATTTTTTTAACCAAAAGTGAATTCTACAAAAGCTTTAACACTGTGTGGGCTGTTCATTGATGTATATAATGATGACAATGATGAGATGGCTATttttatatggaaaaatacaaaaCTTGTATaaga

Function

NR:

description
extracellular tyrosine-protein kinase PKDCC-like

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0016301 kinase activity molecular_function

KEGG:

id description
K17548 PKDCC; extracellular tyrosine-protein kinase PKDCC 

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608363.2 True 3627 mRNA 0.47 7 66215269 66250722

Neighbor

gene id symbol gene type direction distance location
LOC110527186 LOC106576747 coding downstream 74043 66021021 ~ 66141226 (-)
LOC110527194 NA coding downstream 129188 66085450 ~ 66086081 (-)
LOC110527131 LOC106576756 coding downstream 392627 65808644 ~ 65822642 (-)
trnai-uau NA coding downstream 411917 65803259 ~ 65803352 (-)
LOC118966709 NA coding downstream 664262 65520534 ~ 65551007 (-)
ubr2 LOC106576742 coding upstream 110476 66361198 ~ 66402069 (-)
LOC110527220 LOC106576739 coding upstream 152685 66403407 ~ 66426637 (-)
prkn park2 coding upstream 176067 66426789 ~ 66550185 (-)
LOC110527294 LOC106576736 coding upstream 490369 66741091 ~ 66746251 (-)
ncoa4 LOC106576735 coding upstream 505492 66756214 ~ 66769374 (-)
G73678 LOC100135970 non-coding downstream 110286 66014065 ~ 66104983 (-)
G73707 NA non-coding downstream 168111 66046509 ~ 66047158 (-)
G73681 LOC106605363 non-coding downstream 210094 65999208 ~ 66005175 (-)
G73285 NA non-coding downstream 259036 65955999 ~ 65956233 (-)
G73283 NA non-coding downstream 259403 65955663 ~ 65955866 (-)
G73843 NA non-coding upstream 347 66251069 ~ 66251307 (-)
G73856 NA non-coding upstream 25033 66275755 ~ 66276076 (-)
G73857 NA non-coding upstream 26151 66276873 ~ 66277185 (-)
G73858 NA non-coding upstream 27138 66277860 ~ 66278075 (-)
G73861 NA non-coding upstream 36877 66287599 ~ 66288045 (-)
LOC110526867 LOC100136521 other downstream 1833913 64369803 ~ 64384521 (-)
G70013 NA other downstream 2937517 63277208 ~ 63277752 (-)
G69210 NA other downstream 3796973 62411522 ~ 62418296 (-)
LOC110526417 LOC106576819 other downstream 4232874 61981652 ~ 61983330 (-)
G68736 NA other downstream 4528961 61682278 ~ 61686308 (-)
tjap1 tjap1 other upstream 568122 66806836 ~ 66883731 (-)
LOC110527436 ppp2r5d other upstream 743960 66965664 ~ 67010646 (-)
LOC110527584 LOC106576720 other upstream 1135787 67386509 ~ 67389299 (-)
LOC110527687 sncg other upstream 1418867 67669589 ~ 67681775 (-)
sdhaf4 LOC106576700 other upstream 1907239 68157900 ~ 68162024 (-)

Expression


Co-expression Network