LOC118965274 (LOC106576739)


Basic Information

Item Value
gene id LOC118965274
gene name LOC106576739
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 66417495 ~ 66424081 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052559.1
AGTCAAGCGAGGACCGGTAGCCTACATCACCACTGAGCTCCGTGATCACAAGCTAGGGAGTGGTAATGCTGGATCAACGGGCTGGTGTGGAAGTCAAGCGGGGACTGGCATGACACCGCGAGTCAACAAGCGCCAACAGAACCTATTGTTCCTTTCCATGATCCATTGGGTACCAGAGAACAGTCATCAATGGCGGGGAAGGGAAGTAAAGATTAATTATTCTCCACCACAAGATTGGTGCTCTAAAATGAACGAATGCCTTGCACTTCCTCAGGAAGACAAGTAAGAAATTAAAAAAGATCCCTAAAAGAGGACTCTTCAGTGGTTGGTCAGTCTGATCACCTGAAGGCTCGGACGTGTTTCATCAGCCGGAGCCAGAGGAAGATGATGACCACAGCGAAGAGGCGCAGGCTGTAGTCCCGCAGTGTTCCTCCAAGCAAGAAGATGTCTGCCACATGGATCCCGAACACAGCCATCAGCAGTATGTACACCAGCCAATCAAAGATGTTCCTGTGACACAGCCAAATGAGATCCCATCGTCTGCTTGCCAGTTAGGTGCTGTACCTCGGGCCACATTGGGTGTGTGCAGCGCAGGTCATCGTTGGTGCGATGCTCACACCAACTCTGCCAGCTCCTTAGCTTCCTGCTGGAGCCTATCATCTCTGCCACTTCCCGGCCCACCTCCACCACTGTTAGCCCCAGAGCTACCACCACCCCAAACACACGCCACCAGTCCTGCAGGGAAAACATAAGGCTCCTCGGTTCGGATGACAGACACAGAGATGGCCACGGTCGTCCAGGAGACTATAAACAGGAAGTTAAGGAGTAGGAGTATCCAAGCCCCCAACCTACAGAGACA
>TU81346
ATGAACGAATGCCTTGCACTTCCTCAGGAAGACAAGTAAGAAATTAAAAAAGATCCCTAAAAGAGGACTCTTCAGTGGTTGGTCAGTCTGATCACCTGAAGGCTCGGACGTGTTTCATCAGCCGGAGCCAGAGGAAGATGATGACCACAGCGAAGAGGCGCAGGCTGTAGTCCCGCAGTGTTCCTCCAAGCAAGAAGATGTCTGCCACATGGATCCCGAACACAGCCATCAGCAGTATGTACACCAGCCAATCAAAGATGTTCCTGTGACACAGCCAAATGAGATCCCATCGTCTGCTTGCCAGTTAGGTGCTGTACCTCGGGCCACATTGGGTGTGTGCAGCGCAGGTCATCGTTGGTGCGATGCTCACACCAACTCTGCCAGCTCCTTAGCTTCCTGCTGGAGCCTATCATCTCTGCCACTTCCCGGCCCACCTCCACCACTGTTAGCCCCAGAGCTACCACCACCCCAAACACACGCCACCAGTCCTGCAGactATACCTTGTGAGCCCTGTCCGGGTGGATTCTGCTTGCAGGGTGGCTCTGGCTCCAGCAGGTGAAGGTAGTAGAACTGCTGCCTGGTCATCCGGTCAGTCACATGGAACTGGTTCAGAGCCAAATGAGCCTGACAAGACCAAAGAGAGCTGAACAATACTATAGGATGACCACATACAGAACCCACTCTATGACAACAACTAGCACATTGTCAGGACAAACTATACAATTGGAGCATGTACTGCAGTATGGCGACTCATTTGGTCAGTGACCATCCAACCCATATTTACCACTGAGGTCATCTTGTCAATCATGGCGGTGATGCAAAGCTGACCATCAGAGTCCTTTACCCCAGCATCAGCCCCTAGTTCCATTAGTGTCCGTGCAGCCTCACTCCTGTCTGAAAACACACAGGAGTACAACAAAAGAAGCATAATCAAGTACAGCAAATAACTGTGTAATGTGCAATTGAGCTATTTGTAAGGTGAGGTGGAGGGTACATTTCCATGTGTGTTTGGAC

Function

NR:

description
transient receptor potential cation channel subfamily V member 5-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052559.1 False 859 mRNA 0.53 4 66417495 66422887
TU81346 True 1015 TUCP 0.36 3 66420495 66424081

Neighbor

gene id symbol gene type direction distance location
prph2b LOC106576743 coding upstream 61601 66351411 ~ 66355894 (+)
wu:fj16a03 LOC100135970 coding upstream 398457 66014081 ~ 66019044 (+)
LOC110527177 LOC106576750 coding upstream 414155 66000257 ~ 66003340 (+)
LOC110532572 LOC106576752 coding upstream 417647 65993868 ~ 65999848 (+)
LOC110527164 LOC106576754 coding upstream 495210 65915581 ~ 65922285 (+)
LOC110527255 LOC106576738 coding downstream 127376 66550263 ~ 66567928 (+)
LOC110527278 qki coding downstream 216038 66638925 ~ 66734658 (+)
yipf3 yipf3 coding downstream 351981 66774868 ~ 66783655 (+)
lrrc73 lrrc73 coding downstream 370533 66793420 ~ 66802542 (+)
dlk2 LOC106576732 coding downstream 462550 66885437 ~ 66954091 (+)
G73552 LOC106576742 non-coding upstream 45877 66370244 ~ 66371618 (+)
G73526 NA non-coding upstream 70107 66311466 ~ 66347388 (+)
G73536 NA non-coding upstream 75160 66335295 ~ 66342335 (+)
G73537 NA non-coding upstream 80207 66336623 ~ 66337288 (+)
G73501 NA non-coding upstream 148511 66268585 ~ 66268984 (+)
G73640 NA non-coding downstream 70252 66493139 ~ 66493679 (+)
G73611 NA non-coding downstream 140912 66563799 ~ 66564430 (+)
G73610 NA non-coding downstream 145758 66568645 ~ 66569036 (+)
G73668 NA non-coding downstream 149185 66572072 ~ 66572483 (+)
G73669 NA non-coding downstream 149866 66572753 ~ 66572964 (+)
G73515 NA other upstream 129026 66287679 ~ 66288469 (+)
LOC110526969 stk32c other upstream 1515871 64809255 ~ 64946164 (+)
G70011 NA other upstream 3142199 63274963 ~ 63275296 (+)
G67930 mcmbp other upstream 4684107 61729765 ~ 61733388 (+)
G74067 LOC106576735 other downstream 333320 66756207 ~ 66758984 (+)
G74139 NA other downstream 361448 66784335 ~ 66784969 (+)
G75747 NA other downstream 1951618 68374505 ~ 68374929 (+)
G78121 NA other downstream 4148778 70571665 ~ 70654961 (+)
ccdc85a ccdc85a other downstream 4613583 71036440 ~ 71076239 (+)

Expression


Co-expression Network