prkn (park2)


Basic Information

Item Value
gene id prkn
gene name park2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 66426789 ~ 66550185 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608414.2
TGTGTTTTTTTGCACCTATTGGATACGTTCGTAGAAGGATTCTGTCTGGTACAatgtatgtaaaacatgttgCAATATGAAACAGCTCAAAAGCTATTTTGGACGCTGCCAGGTACATTTAACTAGATCATAATAATACGGAATCAAGTAGGACTCCATCTCCCATAGTCCTCGAGACTTGCAAATACTCTAATGGAGATCCCCAGCAGTCGTATGACATGAAGTTCTTCACCATAATACAACCAGAGGACGTAGCTACATCCCCAGCATGATTGtgtATGTAAGGTTTAACTCCAGCCATGGCTTCCCAGTGGAGCTAGAGGAGGGGGCCTGCATTGCAGTGCTGAAGGAGAAGGTGGGGAGGCTGCAGGGGGTACAGCCGGAGCAGCTGAGAGTCATCTTTGCTGGCAGAGAGCTGCTCAGCGACTGCACCCTCCAGGGCTGTGACCTCCCAGAGCAGAGTACCGTGCACGTGGTGCTGCCTCCCCCGGGGTCGGGCCGGTGCTCTGACCTGGCCCTGCAGCACCGTCTGGGTCGAGGGGTGGACAGCCTCACCCGCCTGGACCTCACCGCCTCCCGCCTGCCCACTACCTCTACCGGCCTGGCTGTCATACTGGAAACTGATGACGAGCAGAGAGCCAGGGAAGAGCCTGAACACACAGAGCCCAGACCTCACAGCAGCTTCTATGTGTACTGCAAGAGTGTGTGCCGGGCCATCCAGCCGGGGAAGCTACGCGTGCGCTGCCGAGCCTGCAAGCAGGGAACCCTCACCTTGAGCCGGggCCCGTCATGTTGGGACGATGTCCTCCTCCCAGAGCGTATCCATGGCGTCTGTCAATCAGAGGGTTGCCTTGGCAGAGTAGCGGAGTTTTACCTGAAGTGTGCTGCCCACCCAACCTCTGATGATGACACGTCTGTGGCCCTGGACCTCGTCATGCCCAATGTGCGGGATGTCCCATGCATTGCCTGCACAGATATCATGAGTCCAGTGTTGGTGTCCCAGTGTCCAGACCGCCATGTCATTTGTCTAGACTGCTTCCACATGTACTGTGTGACCCGCCTCAACGAGCGACAATTCATCCACCACCCAGATGTCGGCTACTCACTTCCATGTGCAGcTGGCTGCCCAGACTCTCTCATAACAGAGTTGCATCACTTCCGAGCCCTAGGTGATGAACAGTATGAGCGGTACCAGCAGTATGCAGCCGAGGAGTGTCTCCTCCAGATGGGAGGAGTGTTGTGTCCAGCCCCTGGATGTGGAGCAGGCCTGCTGCCTGAGGAGGACAAGAGGATGATCCAGTGTCTGCTCAGCAACGGGTTGGGATGCGGGTTTGTGTTCTGCCGTGACTGTAAGGAAGGATTCCACGAGGGGGAATGTCATGTGAGGTCATCACCTGTCTCAGGAGGAGCCCTGCAGGGTTATGTAGTGGATGAGGAGGCAGCTCTTCAGGCTCGGTGGGAGCAGGCCTCGCAGGAGACTATAGACGAGACCACCCGTCCATGTCCACATTGCAAGGTCCCAGTGGAGAAGAGTGGTGGCTGTATGCACATGGTGTGTCCCCGTGCCCAGTGTAAGTTTGAGTGGTGCTGGATCTGTCGTGTGGAGTGGAACAGGGAGTGTATGGGCAACCACTGGTTTGGCTGACTCTGAGACCTCAGAAAGGCCCTGCCGCCACTCAGGAATAcgtgcctgtgactggaacgcaAAATCAATCATGTGTTTAAAAGACTCAATAAAGCTGTGCCCTGACCTATCA
>XM_036983069.1
TGTGTTTTTTTGCACCTATTGGATACGTTCGTAGAAGGATTCTGTCTGGTACAatgtatgtaaaacatgttgCAATATGAAACAGCTCAAAAGCTATTTTGGACGCTGCCAGGTACATTTAACTAGATCATAATAATACGGAATCAAGTAGGACTCCATCTCCCATAGTCCTCGAGACTTGCAAATACTCTAATGGAGATCCCCAGCAGTCGTATGACATGAAGTTCTTCACCATAATACAACCAGAGGACGTAGCTACATCCCCAGCATGATTGtgtATGTAAGGTTTAACTCCAGCCATGGCTTCCCAGTGGAGCTAGAGGAGGGGGCCTGCATTGCAGTGCTGAAGGAGAAGGTGGGGAGGCTGCAGGGGGTACAGCCGGAGCAGCTGAGAGTCATCTTTGCTGGCAGAGAGCTGCTCAGCGACTGCACCCTCCAGGGCTGTGACCTCCCAGAGCAGAGTACCGTGCACGTGGTGCTGCCTCCCCCGGGGTCGGGCCGGTGCTCTGACCTGGCCCTGCAGCACCGTCTGGGTCGAGGGGTGGACAGCCTCACCCGCCTGGACCTCACCGCCTCCCGCCTGCCCACTACCTCTACCGGCCTGGCTGTCATACTGGAAACTGATGACGAGCAGAGAGCCAGGGAAGAGCCTGAACACACAGAGCCCAGACCTCACAGCAGCTTCTATGTGTACTGCAAGAGTGTGTGCCGGGCCATCCAGCCGGGGAAGCTACGCGTGCGCTGCCGAGCCTGCAAGCAGGGAACCCTCACCTTGAGCCGGGAGTTTTACCTGAAGTGTGCTGCCCACCCAACCTCTGATGATGACACGTCTGTGGCCCTGGACCTCGTCATGCCCAATGTGCGGGATGTCCCATGCATTGCCTGCACAGATATCATGAGTCCAGTGTTGGTGTCCCAGTGTCCAGACCGCCATGTCATTTGTCTAGACTGCTTCCACATGTACTGTGTGACCCGCCTCAACGAGCGACAATTCATCCACCACCCAGATGTCGGCTACTCACTTCCATGTGCAGcTGGCTGCCCAGACTCTCTCATAACAGAGTTGCATCACTTCCGAGCCCTAGGTGATGAACAGTATGAGCGGTACCAGCAGTATGCAGCCGAGGAGTGTCTCCTCCAGATGGGAGGAGTGTTGTGTCCAGCCCCTGGATGTGGAGCAGGCCTGCTGCCTGAGGAGGACAAGAGGATGATCCAGTGTCTGCTCAGCAACGGGTTGGGATGCGGGTTTGTGTTCTGCCGTGACTGTAAGGAAGGATTCCACGAGGGGGAATGTCATGTGAGGTCATCACCTGTCTCAGGAGGAGCCCTGCAGGGTTATGTAGTGGATGAGGAGGCAGCTCTTCAGGCTCGGTGGGAGCAGGCCTCGCAGGAGACTATAGACGAGACCACCCGTCCATGTCCACATTGCAAGGTCCCAGTGGAGAAGAGTGGTGGCTGTATGCACATGGTGTGTCCCCGTGCCCAGTGTAAGTTTGAGTGGTGCTGGATCTGTCGTGTGGAGTGGAACAGGGAGTGTATGGGCAACCACTGGTTTGGCTGACTCTGAGACCTCAGAAAGGCCCTGCCGCCACTCAGGAATAcgtgcctgtgactggaacgcaAAATCAATCATGTGTTTAAAAGACTCAATAAAGCTGTGCCCTGACCTATCA

Function

symbol description
park2 parkin

NR:

description
E3 ubiquitin-protein ligase parkin isoform X2

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0009266 response to temperature stimulus biological_process
GO:0006979 response to oxidative stress biological_process
GO:0006120 mitochondrial electron transport, NADH to ubiquinone biological_process
GO:0051865 protein autoubiquitination biological_process
GO:0005829 cytosol cellular_component
GO:0005739 mitochondrion cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K04556 PARK2; parkin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608414.2 False 1757 mRNA 0.55 12 66426789 66550185
XM_036983069.1 True 1673 mRNA 0.55 11 66426789 66550185

Neighbor

gene id symbol gene type direction distance location
LOC110527220 LOC106576739 coding downstream 152 66403407 ~ 66426637 (-)
ubr2 LOC106576742 coding downstream 24720 66361198 ~ 66402069 (-)
pkdcca LOC106576746 coding downstream 176067 66215269 ~ 66250722 (-)
LOC110527186 LOC106576747 coding downstream 285563 66021021 ~ 66141226 (-)
LOC110527194 NA coding downstream 340708 66085450 ~ 66086081 (-)
LOC110527294 LOC106576736 coding upstream 190906 66741091 ~ 66746251 (-)
ncoa4 LOC106576735 coding upstream 206029 66756214 ~ 66769374 (-)
tjap1 tjap1 coding upstream 256651 66806836 ~ 66883731 (-)
dnph1 dnph1 coding upstream 406928 66957113 ~ 66958777 (-)
LOC110527436 ppp2r5d coding upstream 415479 66965664 ~ 67010646 (-)
G73716 NA non-coding downstream 37587 66339099 ~ 66389202 (-)
G73896 NA non-coding downstream 49529 66376863 ~ 66377260 (-)
G73719 NA non-coding downstream 86808 66335295 ~ 66339981 (-)
G73862 NA non-coding downstream 136548 66289933 ~ 66290241 (-)
G73861 NA non-coding downstream 138744 66287599 ~ 66288045 (-)
G73977 LOC106576738 non-coding upstream 13112 66563297 ~ 66563581 (-)
G73978 NA non-coding upstream 17547 66567732 ~ 66568227 (-)
G73984 NA non-coding upstream 28675 66578860 ~ 66579316 (-)
G73986 NA non-coding upstream 31288 66581473 ~ 66581687 (-)
G73990 NA non-coding upstream 36522 66586707 ~ 66586967 (-)
LOC110526867 LOC100136521 other downstream 2045433 64369803 ~ 64384521 (-)
G70013 NA other downstream 3149037 63277208 ~ 63277752 (-)
G69210 NA other downstream 4008493 62411522 ~ 62418296 (-)
LOC110526417 LOC106576819 other downstream 4444394 61981652 ~ 61983330 (-)
G68736 NA other downstream 4740481 61682278 ~ 61686308 (-)
LOC110527584 LOC106576720 other upstream 836324 67386509 ~ 67389299 (-)
LOC110527687 sncg other upstream 1119404 67669589 ~ 67681775 (-)
sdhaf4 LOC106576700 other upstream 1607776 68157900 ~ 68162024 (-)

Expression


Co-expression Network