yipf3 (yipf3)


Basic Information

Item Value
gene id yipf3
gene name yipf3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 66774868 ~ 66783655 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608546.2
GCACGACGTGCTACGCGTTGAGTCTGAGTGACGCAGCCCCATCTGATTAGGCAGTGTAATGCATTTTTGGGAACAAATATTTATCTTTTAAGCGCCCCTGATGCTGTAGTTGACAATTCATTTGGTTGTATGTGAGATTGAAAGTGCAGTTTTCTTTTTAAAAGGGATCAAGGACACGTTCACCTGCTCTAAAAGATGGCTTCGTCTGATGGAAACAAAAACACGAACACGGAACCATGGGGTGGTTTTGATGACAACATTAtccagGGCACTGGGTCAGCAGTGATTGACATGGAAAACATGGATGACACATCAGGCTCCAGCTTTGAGGACATGGGGGAGATGCACCAGcgcatgaaggaggaggaggaggtggcagAGGAGGCTGAAGCAACTGAAGAGGAGACTGGAGAGGATGGCGAGTTTCTGGGAATAAAGGGTATCAAGGGCCAGCTGGGGAGACAGGTGGCAGATGAGGTGTGGCAAGCAGGAAAGCGGCAGGCTTCCAAGGCTTTCAACCTATATGCCAACATAGACATTCTCCGGCCGTACTTTGATGTGGAGCCTATGCAAGTTAGGAACAGGTTGATTGAATCAATGATACCCATCCGTATGATCAATTTTCCACAGAAGATTGCTGGGGAGCTGTATGGGCCCATGATGCTGGTGTTCACGCTGGTGGCCATCCTCCTGCACGGAATGAAGACATCAGGAACAGTTATTAGAGAGGGTACTCTGATGGGAACAGCCATAGGGACATGCTTTGGTTACTGGCTGGGAGTTTCCTCCTTCATCTATTTCCTGGCGTACCTATGCAATGCCCAGATCACCATGCTCCAGATGCTGTCTCTGCTGGGTTATGGTCTTTTCGGGCACTGCGTGGTTCTCTTCGTCACCTACAACGTCCACTTCCACTCCCTGTTCTACATCCTGTGGCTGGTCGTAGGAGGGCTCTCCACACTGCGGATGgtggcTGCTGTTATCTCTCGGACTGTGGGCCAGACCCCACGCCTCATCCTCTGTGGAACACTGGCTGCTCTGCATATGCTCTTCCTGCTCTACCTGCACTTCGCTTATCACAAGATTGTTGAAGGTATCCTGGACACATTGGAAGGACCCAACATGCCCCCCATCCAgagagtggccagagatttgCCTGTGGTGGCCACTGCTGCTATGAATGCTGTGAATGCCACAGTGAAGACCCTTGGTGTTATCCTGCAGTCACAGTGATGTTGTGTCCAACATCAACGATGAGACCATAGGCTCATGAGAACCTGATTtccatggtggtggtgttgtgtagATAATACAGACTGATGTGAAGGTCAAAGACCATGGTGGTTACTGGTTATAGTTGACATTCATCATGATACATGAACATTGTCTCGGCAAACAAATCATCATCTGTTCACAACAACTATTGGTTGTTTATATTGAACCAAATCAAAAAACTAGTGAATGTCATGTTTGTTCTCTTCAAATGATTGACTCCCTTTTTCATAGGGATCTTGTATTTGTTAAAGCAGCTTGAGTGCATTAAGATTCCCAGCTGTTTGCATTTGTTCTCATGTTTAGACAAATTAATATTCAATTCAACTCGACACTCTCCTTTTTGTAGGCTTTGTTACACAGGTTATGGTGATTCTATAAAATTCTAGACGTTCAACGGGAGGACGGTTCCCTAAGGCTGTGTGGTGCCTTCTATAGTTTCTTCAaaggaattattattattattatcatgtatGATACGGGGTAAATTTAGAGTTTTATCTAGCTTGTTTTACACAATGCACCTCTCTTGTCTGATAACCTAATGGGAAAATAACCAGATATGCAGTTGATATGTCACGAGATACTGCATTAACTTATGAATATTGTTCCTTCTAATCAGCTTTTGTTTCACCCAGTCATTTGTGCTGTGCATTATTTGTACTTCCTAACATTTGGGTGGGATGCAAGGTAACCTCTCCTCCTTTTTATTTAAATGTGAAATTGTATTTATAGGGTTATTGTACAAAACGATACAATGGAAATAAACTTTACGGACCTAAGACATGGTCTTCTGAAAAAAAATCAAGAA

Function

symbol description
yipf3 Predicted to act upstream of or within cell differentiation. Predicted to be located in cytoplasm and plasma membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human YIPF3 (Yip1 domain family member 3).

NR:

description
protein YIPF3

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K22941 YIPF3, KLIP1; protein YIPF3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608546.2 True 2083 mRNA 0.45 9 66774868 66783655

Neighbor

gene id symbol gene type direction distance location
LOC110527278 qki coding upstream 40216 66638925 ~ 66734658 (+)
LOC110527255 LOC106576738 coding upstream 206940 66550263 ~ 66567928 (+)
LOC118965274 LOC106576739 coding upstream 351981 66417495 ~ 66424081 (+)
prph2b LOC106576743 coding upstream 418974 66351411 ~ 66355894 (+)
wu:fj16a03 LOC100135970 coding upstream 755830 66014081 ~ 66019044 (+)
lrrc73 lrrc73 coding downstream 9765 66793420 ~ 66802542 (+)
dlk2 LOC106576732 coding downstream 101782 66885437 ~ 66954091 (+)
mea1 mea1 coding downstream 175183 66958838 ~ 66962136 (+)
LOC110527498 syndig1 coding downstream 359797 67143452 ~ 67194726 (+)
cytf cytf coding downstream 439653 67223308 ~ 67227387 (+)
G74131 NA non-coding upstream 3736 66770907 ~ 66771132 (+)
G74128 NA non-coding upstream 4480 66768928 ~ 66770388 (+)
G74127 NA non-coding upstream 21017 66753518 ~ 66753851 (+)
G74126 NA non-coding upstream 21681 66752891 ~ 66753187 (+)
G74122 NA non-coding upstream 37880 66736787 ~ 66736988 (+)
G74140 NA non-coding downstream 1429 66785084 ~ 66785570 (+)
G74146 NA non-coding downstream 8964 66792619 ~ 66792818 (+)
G74174 NA non-coding downstream 52849 66836504 ~ 66837614 (+)
G74157 LOC106581475 non-coding downstream 67913 66851568 ~ 66852284 (+)
G74195 NA non-coding downstream 81757 66865412 ~ 66866511 (+)
G74067 LOC106576735 other upstream 15884 66756207 ~ 66758984 (+)
G73515 NA other upstream 486399 66287679 ~ 66288469 (+)
LOC110527164 LOC106576754 other upstream 852583 65915581 ~ 65922285 (+)
LOC110526969 stk32c other upstream 1873244 64809255 ~ 64946164 (+)
G74139 NA other downstream 680 66784335 ~ 66784969 (+)
G75747 NA other downstream 1590850 68374505 ~ 68374929 (+)
G78121 NA other downstream 3788010 70571665 ~ 70654961 (+)
ccdc85a ccdc85a other downstream 4252815 71036440 ~ 71076239 (+)
G82111 LOC106577091 other downstream 6767961 73551616 ~ 73571737 (+)

Expression


Co-expression Network