LOC110527498 (syndig1)


Basic Information

Item Value
gene id LOC110527498
gene name syndig1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 67143452 ~ 67194726 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608814.2
AGGCTGTCTCTAGTTCTTATTAAAGCTCAATGTTCCAAACCTGGGACCTGCAGTACATCAACCCTTATTATTTGTCGGAAGTGTAGCCTACACCTGGGGGCAGCATTGGATTATTTGATAGGACAAACAACAGCGAGGTAGAGACCGAGGTCAATCACTCTTCAACATTCACAACATTAAATTGTCATATTTGTGAGTCAATATACAATTCAGTATAGGATTTACCTATAGTACCAGATGGGTTACTAAACCATAGTTTATTGTAAACCTTTGATATTGTAATCCCCTTGAAATATGGCATAAAATCCCTATTTCAGCACAAAAAATATGTTGAAATAACAGGGATTCTTTAGGACCATGGGGTGAACTGTTCCATTTGATTGGTACCTTCACACTCACCCAGCACTAGATTGATAGCCGGTAAGGTCTGAAATGCTGCTATTTGACACTTTTACATACAAAGCACAGTGCAGCTGCCTTCACTTCACAAGTAAGAACTGTGGTAGCTATAGccggtggtgtgtgtctgtctgtatgctgcaCGTGGTCCCCGCTGTATTTTTTCCCATCTGAGCAGAAGACAAAATGCAACTCCCCCATTGCAGGCACACCAAATACAAATTTCATTGATGTTTTTCTTCAGGTTGGACATCAGACTATTGAGGctttggtttaacactttttgttaGATTAGGTGGAGACGGAGTCCTGGATAGATTTATATGGGATAGCCTGTAGAGAATTCCTACTGAAAGGGAAGGATCGCTGACGGATTGTTAAACCCTCGGTCCACTTATGTTTCCGACGGGATCTAGTCTACTCGCCGCAGAACGCGCTTTCACGTTGGAAGGAGAGTGCAGCCTACCATCCCATGCCTTCCTCAACCCAAGGCCCCTATGAGAGAGGCCTTTAAAGAGGAGGGGATTTGACCAAACAATCCAGCTCTGTAAGTCGGGATGGAGGGTGGACAGGGAGCAGGGTCGTGCTCCAGCCAGGCTGTGGAGGCTGAGTACCCCGCCCAGGGGACAACTTCTCCAGCCAGGGGAGGAGGGGATGCAGGGCTGGGCTCTTGCAAGCACAACGGACTGATCAATACCCACAGCTTGATGGTGGAGACTAAGGAAGGGCTGGTGTCAGTGTACTCGGGGTCACAATACCAGGGTCACATGGTGGTCAACCTATCCCCCCAGCAGGAGCAGAATGGCCAGGGAGTGGGCGGAGGAGGGGGACACCCACAGCTGCTCAACCCCAGCGCTCTGCCCCAGGGCATGGACCCATGCTTCAGGCCCGACCTGATCCTGTACTCTGAGAACACGCTGCGGGCCTGGGGTGATGGAGTAGTTGGGGATTGCTGTGAGACCACCTTCATAGAGGACTTGGCATCCGGTTCCTCTGCCGCCTCCAAGGATACGCTGATGTTTGCCGATGGCAAGTTCCTGGACATGTCTGTGGAGGATGCAAAGATCCAGACCCTGTCCTATGACGATGATGAGTTCCAGGACCTGGAGAGCGAGTACTCGAGCGACTCAGAGAGTGAAGACAACTTTCTCATGATGCCACCGAGGGACCACTTGGGCCTGAGCGTCTTCTCCATGCTGTGTTGCTTCTGGCCCTTGGGGATCGCTGCCTTCTACTTGTCCCATGAGacgaaCAAGGCGGTGTCTAAGGGGCACTTACACTTGGCCAGCTCCAGCTCCAGACGTGCCCTCTTCCTGGCTGTGCTGTCAATCACCATCGGCACAGGCATATATGTGGGCGTGGCTGTAGCGCTCATCGCATACCTCTCCAAGAACCACCACTTGTAGCCTTGCCCTGCCCCCACTGCACTGTACTGACTGCGCTGGGGGTATGGTTCACTTGGGGGCAATTGAACAATGGAATATGGGCCTGCAAACTATGGGACTATCAGGATGGACAGAACCTGGCCATATGGTTGACACAATTCATGAGCTCTAACATGAGGTTCTTGATATGGATAATGGTATTTTAACGGTCAAGTTATTCTCTCATTTTCACCAAGAAAAACGGAGACTGTTAGTTGTTCCATACATGACTGATTTTCTTTTCTAGATGTTTAAAATTGGTTTGAGTTTTACCAAGGCATAACACAGCCTGTGAGAGGTCAAACCAACATGCACTAAATATTACCAGTACCAAGAGCATATCATACGTTTACGGGGCATGTTCAATGCTCAGTTAATGGTGAGTTGTGGATGTCCAGCTACATTTACCACACTAACAGTCACATTTGGCAGCTCCTGTCGTGGATCAAAGGGCTGCTAAAGATGTCACTCATCCAAACATTCAACCTGTATACATTTATTCTACGTCACATTGAATTGATCCGTGGATGTCACATAGTGCAGCTCAACTGGATCATTTCTCGGTTGAATATGACAAATTCTATCAAGTAATGGGATGGTTAATATACAGtgcctacagaaagtattcacaccgcttgattacagcctgaatttaaaatgcatTCAATTGAGGTTTTCATTGTCACTGGActgcacacaataacccataatgtcaaagtggaattatgtttttcgaaattaacaaataataataaaaaaattaaaagctgaaatgtcttcagtcaataagcaTTCTACCCCTtctgttatggcaagcctaaataagttgagTAAAAGATATGCTCCCATAATAAGTttcatggactctgtgtgcaataatagtgtttagcatgatttttgaatgactacctcatctctgtacaccacacgTAAAAGTATCTGTTGAGGGGGGgaggcagacattgaatatccctttgagcatgctgaagttattaattacactctggatggtgtgtcaatacacccagtcactacaaatatacaggcctccttcctaactcagttgacagagaggaagaaaacctctcagg

Function

symbol description
syndig1 Predicted to enable glutamate receptor binding activity and protein homodimerization activity. Involved in positive regulation of synapse assembly. Located in intracellular membrane-bounded organelle.

NR:

description
synapse differentiation-inducing gene protein 1-like

GO: NA

KEGG:

id description
K23903 SYNDIG1; synapse differentiation-inducing gene protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608814.2 True 2914 mRNA 0.46 4 67143452 67194726

Neighbor

gene id symbol gene type direction distance location
mea1 mea1 coding upstream 181316 66958838 ~ 66962136 (+)
dlk2 LOC106576732 coding upstream 189361 66885437 ~ 66954091 (+)
lrrc73 lrrc73 coding upstream 340910 66793420 ~ 66802542 (+)
yipf3 yipf3 coding upstream 359797 66774868 ~ 66783655 (+)
LOC110527278 qki coding upstream 408800 66638925 ~ 66734658 (+)
cytf cytf coding downstream 28582 67223308 ~ 67227387 (+)
LOC110532586 NA coding downstream 161344 67356070 ~ 67387886 (+)
pygb pygb coding downstream 193315 67388041 ~ 67413285 (+)
gins1 gins1 coding downstream 248980 67443706 ~ 67446493 (+)
aifm2 amid coding downstream 304461 67499187 ~ 67506681 (+)
G74285 NA non-coding upstream 36562 67106359 ~ 67106890 (+)
G74262 NA non-coding upstream 53100 67089905 ~ 67090352 (+)
G74259 LOC106576725 non-coding upstream 55762 67077643 ~ 67087690 (+)
G74266 NA non-coding upstream 81264 67060470 ~ 67062188 (+)
G74208 dnph1 non-coding upstream 184874 66957120 ~ 66958578 (+)
G74630 NA non-coding downstream 24376 67219102 ~ 67219405 (+)
G74637 NA non-coding downstream 36307 67231033 ~ 67232143 (+)
G74644 NA non-coding downstream 42623 67237349 ~ 67237561 (+)
G74648 NA non-coding downstream 47120 67241846 ~ 67242134 (+)
G74139 NA other upstream 358483 66784335 ~ 66784969 (+)
G74067 LOC106576735 other upstream 384468 66756207 ~ 66758984 (+)
LOC118965274 LOC106576739 other upstream 719371 66417495 ~ 66424081 (+)
G73515 NA other upstream 854983 66287679 ~ 66288469 (+)
LOC110527164 LOC106576754 other upstream 1221167 65915581 ~ 65922285 (+)
G75747 NA other downstream 1179779 68374505 ~ 68374929 (+)
G78121 NA other downstream 3376939 70571665 ~ 70654961 (+)
ccdc85a ccdc85a other downstream 3841744 71036440 ~ 71076239 (+)
G82111 LOC106577091 other downstream 6356890 73551616 ~ 73571737 (+)
G83836 NA other downstream 7714499 74909225 ~ 74909806 (+)

Expression


Co-expression Network