cytf (cytf)


Basic Information

Item Value
gene id cytf
gene name cytf
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 67223308 ~ 67227387 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021564847.2
GGTGAATGTGTTGCCTTACAGGAAGTAAAATAAACAGAACAGTGTTGAGAAAGCTCCAACAGGTATTGGCAACATGCTTCTGCTCTTCTCTGGCTTGTGCCTGTGCTCAATTGTCAGTTGCCAAAGGTATACGTCTGTGCCTGGCTCTCCCTATAACATCAGCACGGATAACAAGGGGGTCCTAAAGGCGGTGCTTCACGGGGCCTATTCATTTAACAACCAGACCAATGATGCTTTTCTCTTCAAGCCATCTGCAATTGAGAAAGCAGAAAGACagCTTGTGAAGGGGTTCAAATACATTCTGGAAGTAGACCTCTCACGGACTGTGTGCCTCAAAAAGGGGCACAAAGAAGCAGACCTGGCCAACTGCAAGTTCCAACCAGATGGTTTGTTACAGCAGACATTCCACTGTGACTTTGAGGTTTGGACTATGCCTTGGCTCCGCTTCATGAAGACTACCTATTTTGTTTGCAGTCCATCTGACCGACCTTCCACTTCTTCATGAAACCCAATCCTTCCTCATTTCAATATTCTGAGAAAATTACTAAACTGGTTAGGTGCCTTTCGGTTGTTGAAGCTGTGTAAATTAGACTTGAAAGGCCTGAAAATCATATTGCTACTCAAGACATGGAAATTGCCATTGTTTGACTATACATTAAAGGAGTAGTTCACTATTTTACAAattgatgttagatggttcctcaccctgaaaaTAGTATACAGGCCAAgagaaactgtaatccatggttcaGTTTTCTTTAAACAGCCACTACAAACTTCAGCTAAGTTTATCCACTACAAGATAACAATCAATGGAAGTGATGGGGTCATGTgagcatgtttttttgtttgttgaactGGCCAAATCACCTTTAAGTAACATCAGAACAAATATGGAGTTGATTTGAATTTGGACATTTAAAAAATCTTCCATCACTTCCATTGATTGTTAGCTTGGGGTTGGTTAAGGTTAGCTGAAGTTTGTAGTGGCTGTTTAAAGAAAACGgaaccatggattacagtttctcttgtcccatagactactttcagggtgaggaacTGATCTAAAATAACCTAACCCTTGCATGTCCTACATAGGTACGGATACCCCCAAGGGACATCCTACTAcaggaaccatctaacatcaagttgtaaaatagTGAACTACTCCTTTAATGTATAGTCAAACAATGGCAATTTCCATGTCTTGAGTAGCAATGTGATTTTCAGGCCTTTCAAGTCTAACTTACACAGCTACAACAACCGAAAGGCATCTAACCTTGTATTTTATCCTATAATAAAATGGTAGACTGCTTTGACCCTTGCAATTTATATACTGAATTATAAATAATCACATGTTGGCCTGAGTTAGGGTCTGCACAGACTCTAATCAACAAGCTctgataaaatgtaaaaaaaaaacttattaACAAGGATTTGACAACCAAGCACGATTATATAAGCCCATGTAAACATAAACCTTCTACAGTGTCCATCTGAAGGCTTGCTCCACCGGGCTGGTTTAACAGCTAGGGTTATCATTCTTCCTCAGCACTCAGTGACCTGAACCCTGACCTTGTGTCTAATAGTCTGTGATACACCTTAATTATTCAAAGGATCTTATGAAACCAGTGCAGCAGCATCTGATCTTGAGGAGCGAGTAGAGAGCAGAAGAGGCTGACAACTGTAGCAGCTGGCGGCTCTTGGGGTCGGCACTCTCCTCTCAGAGCTCCCAGCACCCTCTTTGATGCAGCGCTCCGAGCACCCTCTTTTAATGAGCTTCACTGGCTCGGAGGCAGGGGCAGGTTTCGATCTGCTCTCATGTAGATGTCTCCTGTACTATACATTGCTGAGGCGTACACCAACACTCGTTTCTCTCATTTAAGACATGTAGTCGGTCAGTAACAGGCTAATATTTTATGGCAGTAGTATGTAAACACTGGTAAGTGGCTAAACAAATTGTAGAAATGTGGCACCATGTTTTTCATATTAGACAAAAGCCCGTTTTAAAACATTACTGTTTTAATTCAAAGGAAACTCAGCTGAAGGCCAGCAGCATTCAACATCGAGCAAAACATTTACATTACGTAAGGTAGTTGACAGTGCAATATACAAAAGCAGATGAAATGTATCACAACAAGGGGAAATGATTCATACTTATTTTGGAATCTTTTTGCATCACCTTTATTATGATGAACAAGATCTTGGATTTCTAAATACACACAAAATAAATCAGTTCAAAGTGGCACTCTTAAAATAATACTCGGTGTGTATTTCAACTGATAAAATTAACTCTTTGAAATTCTCCAAGTACAATAATAACATTGTCAGTTATATTTAAGGGTGAGATGAGAGCTTTATTGCAAAAATGAAATTAAAAGTTGAGATACTGAATGgtttaaacaaacaaaacaaaaataagaacaaattTGGCACATttcaacaacctaaaacacagaCCTGAAAGACAATGTACTTACATGGGGATTTTTGGGCAAACTATTTGGCCCAAAGACTGtttggttaaataaaaaacattcctTGAGAAACTACTGAGATGCACTGTCAACAGAAATTAAAGGGTTAATAGTTAATTGTAGGCTGATAAGACTAGAAACGATGGATATGCATCCCAGTCAAATGCGCCTTAATAGTGCAGATACTTAATGAAGA
>NM_001165189.2
AGGAAGTAAAATAAACAGAACAGTGTTGAGAAAGCTCCAACAGGTATTGGCAACATGCTTCTGCTCTTCTCTGGCTTGTGCCTGTGCTCAATTGTCAGTTGCCAAAGGTATACGTCTGTGCCTGGCTCTCCCTATAACATCAGCACGGATAACAAGGGGGTCCTAAAGGCGGTGCTTCACGGGGCCTATTCATTTAACAACCAGACCAATGATGCTTTTCTCTTCAAGCCATCTGCAATTGAGAAAGCAGAAAGACagCTTGTGAAGGGGTTCAAATACATTCTGGAAGTAGACCTCTCACGGACTGTGTGCCTCAAAAAGGGGCACAAAGAAGCAGACCTGGCCAACTGCAAGTTCCAACCAGATGGTTTGTTACAGCAGACATTCCACTGTGACTTTGAGGTTTGGACTATGCCTTGGCTCCGCTTCATGAAGACTACCTATTTTGTTTGCAGTCCATCTGACCGACCTTCCACTTCTTCATGAAACCCAATCCTTCCTCATTTCAATATTCTGAGAAAATTACAACAACCGAAAGGCATCTAACCTTGTATTTTATCCTATAATAAAATGGTAGACTGC
>TU82510
GAAAGCTCCAACAGGTATTGGCAACATGCTTCTGCTCTTCTCTGGCTTGTGCCTGTGCTCAATTGTTGCCAAAGGTATACGTCTGTGCCTGGCTCTCCCTATAACATCAGCACGGATAACAAGGGGGTCCTAAAGGCGGTGCTTCACGGGGCCTATTCATTTAACAACCAGACCAATGATGCTTTTCTCTTCAAGCCATCTGCAATTGAGAAAGCAGAAAGACagCTTGTGAAGGGGTTCAAATACATTCTGGAAGTAGACCTCTCACGGACTGTGTGCCTCAAAAAGGGGCACAAAGAAGCAGACCTGGCCAACTGCAAGTTCCAACCAGATGGTTTGTTACAGCAGACATTCCACTGTGACTTTGAGGTTTGGACTATGCCTTGGCTCCGCTTCATGAAGACTACCTATTTTGTTTGCAGTCCATCTGACCGACCTTCCACTTCTTCATGAAACCCAATCCTTCCTCATTTCAATATTCTGAGAAAATTACTAAACTGGTTAGGTGCCTTTCGGTTGTTG
>TU82514
accctgaaaaTAGTATACAGGCCAAgagaaactgtaatccatggttcaGTTTTCTTTAAACAGCCACTACAAACTTCAGCTAAGTTTATCCACTACAAGATAACAATCAATGGAAGTGATGGGGTCATGTgagcatgtttttttgtttgttgaactGGCCAAATCACCTTTAAGTAACATCAGAACAAATATGGAGTTGATTTGAATTTGGACATTTAAAAAATCTTCCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021564847.2 False 2673 mRNA 0.39 4 67223308 67227387
NM_001165189.2 False 582 mRNA 0.45 5 67223327 67226028
TU82510 False 522 lncRNA 0.46 4 67223356 67225288
TU82514 True 231 lncRNA 0.35 1 67225418 67225648

Neighbor

gene id symbol gene type direction distance location
LOC110527498 syndig1 coding upstream 28582 67143452 ~ 67194726 (+)
mea1 mea1 coding upstream 261172 66958838 ~ 66962136 (+)
dlk2 LOC106576732 coding upstream 269217 66885437 ~ 66954091 (+)
lrrc73 lrrc73 coding upstream 420766 66793420 ~ 66802542 (+)
yipf3 yipf3 coding upstream 439653 66774868 ~ 66783655 (+)
LOC110532586 NA coding downstream 128683 67356070 ~ 67387886 (+)
pygb pygb coding downstream 160654 67388041 ~ 67413285 (+)
gins1 gins1 coding downstream 216319 67443706 ~ 67446493 (+)
aifm2 amid coding downstream 271800 67499187 ~ 67506681 (+)
psda LOC106576711 coding downstream 301224 67528611 ~ 67575049 (+)
G74630 NA non-coding upstream 3903 67219102 ~ 67219405 (+)
G74285 NA non-coding upstream 116418 67106359 ~ 67106890 (+)
G74262 NA non-coding upstream 132956 67089905 ~ 67090352 (+)
G74259 LOC106576725 non-coding upstream 135618 67077643 ~ 67087690 (+)
G74266 NA non-coding upstream 161120 67060470 ~ 67062188 (+)
G74637 NA non-coding downstream 3646 67231033 ~ 67232143 (+)
G74644 NA non-coding downstream 9962 67237349 ~ 67237561 (+)
G74648 NA non-coding downstream 14459 67241846 ~ 67242134 (+)
G74649 NA non-coding downstream 15189 67242576 ~ 67242792 (+)
G74652 NA non-coding downstream 24992 67252379 ~ 67265630 (+)
G74139 NA other upstream 438339 66784335 ~ 66784969 (+)
G74067 LOC106576735 other upstream 464324 66756207 ~ 66758984 (+)
LOC118965274 LOC106576739 other upstream 799227 66417495 ~ 66424081 (+)
G73515 NA other upstream 934839 66287679 ~ 66288469 (+)
LOC110527164 LOC106576754 other upstream 1301023 65915581 ~ 65922285 (+)
G75747 NA other downstream 1147118 68374505 ~ 68374929 (+)
G78121 NA other downstream 3344278 70571665 ~ 70654961 (+)
ccdc85a ccdc85a other downstream 3809083 71036440 ~ 71076239 (+)
G82111 LOC106577091 other downstream 6324229 73551616 ~ 73571737 (+)
G83836 NA other downstream 7681838 74909225 ~ 74909806 (+)

Expression


Co-expression Network