acss1 (acss1)


Basic Information

Item Value
gene id acss1
gene name acss1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 67252292 ~ 67271239 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608834.2
ttttttttgtacttttgGGGTTGCAATGCACAAAAAATGTCCCGACTCCCGACCCACAGTTTGGAAAACAGTGGGCTAGGCTACACTTTAGTGATAGTGAGTGCTGAAACTAACTGTCCTCTGTCATGAACACTGACCTTTACATAATACATTTTCATCAACGACTTGTTCCCACCCTTTCTGTACCACTCAAGGAAGCTTGAAAGAAAAGGATCCGGCTCTGGTCAAGTTCTGCGTGCAGCAGGGGAGCAGAATATGGCTGCACATAAAAACGGGAGTTTGATACATATAATAAATAGAGCCAGTGTATTCTTCAAAAACGGCAGTTACCGAAAGAGAATTTTATTGACCTCTCTGAAACCTGTTCAGTGTCAGAGGCGAACAGTCTCCAGTATCGGCGATAGGAACACGAACTTGACACCGCACTTGAGCTCAAATCTCGCTGGATGGTCATACAACGAGTTGTACGAATTGTCTGTGAAAGATCCGGAAACCTTTTGGGGATCAATTGCTAAAGAGAGGCTTACATGGAATAAACCATTCGATCAAGTGAGGGACTGCGAAATTACTAGTGGGAAAATCAATTGGTTTCTTGGGGGACAGTTGAACGTTTCTGTGAATTGTTTGGATGTGCATGTTGCCAAGCATCCTGACAGAGTCGCCCTGGTCTGGGAGAGGGATGAACCTGGGACGGAGGTAAAGGTCACCTATAGGGAGCTACTTGAGACTACCTGCCGCCTAGCCAACACCCTGAAGAGGCATGGGGTCAACAAAGGTGACCGGGTGGCCATTTATATGCCAGTGTCGCCCATCGCTGTGGCTGCCATGCTTGCGTGTGCTCGTATCGGTGCTGTGCACACGGTGGTGTTTGCTGGGTTCAGCTCAGAGGCCCTGGCTGGGAGGATTCAGGATGCCCAGTGTAAAGCTGTGATCACGTGTAACCAAGGTGTGAGGGGAGGCCGGTTCATAGACCTGAAACCTACAGTAGATGCTGCAGTGAAGAACTGCCCCAATGTCCAGCATGTGTTTGTGGCCCAGAGGACCACTAACCCAACTCCCATGGGCAAACTAGACATCCCATTGGAGGAGgcGATGGCCAGTGAGTCGGCACAGTGTGCTCCAGAGCCTATGGGCAGTGAGGAGATGCTTTTTATGCTCCACACGTCAGGCAGTACAGGCAAGCCCAAGGGCATTGTCCACACACAGGCTGGCTATCTGCTCTATGCTGCACTGACTCACCAGTATGTCTTCGACTACCATCCGGGCGATGTGTTTGGCTGTGTGGCAGACATTGGCTGGGTGACTGGTCATAGCTATGTGGTGTATGGTCCTCTGTGTAATGGTGCCACCACGGTCCTCTTTGAGAGCACTCCTGTGTACCCAGACCCCGGGCGATACTGGGAAACAGTGCAGCGTCTGGGCATTAACCAGTTCTACGGTGCTCCCACTGCCATCAGGCTGCTGCTGAAATATGAGGAGAGCTGGGTCAAAAAGTACGACAGGTCCTCCCTCAAGACCCTCGGCTCTGTGGGGGAGCCTATCAATCACGAGGCATGGGAGTGGTTCTACAACGTGGTGGGAGATGGAAGATGCCCCCTAGTGGATACATGGTGGCAGACAGagACGGGAGGTGTGTGTATTGCTCCAAGGCCAGCTGAAAAGGGTGCTGAAATTGTTCCGGCCATGGCCATGAGGCCCTTCTTTGGCATTCAGCCTGTTctcatggaggagaagGGTAAGCCTATATCAGGAAATGATGTCAGTGGAGCCCTTTGTATTGGCCAACCATGGCCTGGAATGGCCCGGACCATCTTTGGGGACCACAAGAGATTTGTGGATGCATACTTCAAACCATATCCTGGTCATTACTTCACTGGGGATGGAGCATATCGGTCTAAAGAAGGCTACTATCAGATAACTGGGCGTATGGATGACGTAATCAACATTAGTGGCCACCGATTGGGTACTGCTGAAATTGAGGATGCCCTGGATGAACACCCAGCAGTTCCTGAGACTGCGGTGATTGGTATTTCCCATGATATCAAAGGAGAGGTTCCCTTTGCCTTTGTGGTTTTGAAAGAAGACCCTTCCCTGAACCACAAAGCAGTCGTTAAAGAGCTGAGAGGCCTGGTGGCCGCTAAGATAGCAAAGTATGCTGTCCCTGACCACTTTCTGGTAGTGAAGAGACTTCCCAAGACACGCTCTGGGAAGATCATGAGGAGAATCCTGCGGAAGGTGGCTATGGAGCAGACAGGAGACCTGGGCGATGTGTCCACTCTGGATGACCCATCTGTTGTCGCAGAGATCATCAAGGCCCATGCCCAGTACAAGAGCCTGACATCTCAGAATAAATGATGAAGTAGGCTTTATCACTGCTAAAACGTTGTGTTGGCAACTTGGCACTGGTCACTTGAGTAACAGCTCACTTCACTCACTCCATTCTGAATGTTATACTGTGCTGAAGCTGAGTCAGTTTTTTGACCACAGTCCTTCAGTTGTTCACTATGTATGGCTCATTTATATAAGACACAAGACACTCAAGATACACAGTACACCCCTTTCATTCCCTTTAAGAATCATTATCATAAGGCTAATCTCTTGTGAGAGATTAAGATTATCAAATGCACAGTATTTTTTAACTTTGTTTTTTAAAGAGCCACGCCGATTGGCACGGgtgtttttctgttgctcattagAAAAACAAGATTTCAGTCTGGGATGTATGTTTCCTGACCGTTGTTCAGCCCATGTTAGTAGGCCAATGGACATTTTAAAATCAAAACACAACCTTCATTTATTTACATGTTGTGATGCACCGATGTTCCAAACTCTGTTTTAGAAGAGACTGACTTTATGAACAAAATTATCagatttacactttgtagtcaattttgacactagaataactgTGTCTTACTCATATAGATGTCACATATGCAGTTTTCAAATGGATTCTTGCTTTTTAAAGGCAGTTctctttaaagctgcaatatgtaagtctaagaagtggtattTTTTCtttgtgcgctatttctatgcttccccttCTTAAGTTTCGTTTTTGGGTCTTTTAACTTTCAGTTTTgttcaccagcttcaaacagctgaaaatacaatatatttttatgaaaaatatatttcacaggggTTTAGATGGTAAAATTACTTtacctgcttgttttgtcacatcaactgaaattaggcgaacaaTTAGACTTttatcaaccaggaaatggcgatttctgcatagtacaTATTTTAAATAAGAAAAGGCGCTgtaataaattatgaataattaATCCAGAATAATGGTGTTTTATATATGTTATCTTTATAAAGGTCCTATTTTAACAAATgttatgaaataaaaataaatgctcAAGGACGTGTTCACTTGATTGAAACACTTACGCTGTCAGTGTGGAAGTGCTTAGTAATGAGTCTCGTATTacgaacaaattaataaaacgacacgtcctgaccaaacatccacagcatgatggtaaacccagggagttctttcagaacagtgaagaatgcttcaggaaacagtgcctCGACAGTGGAAAAGTATGTCCGCTAGCAAGGCATTGTTATTTTATAGCAGAACTATGGGAGTACTAACTAACTCTCATAGTAgtagatgtgagtttctctttcaaacaatcccctggccttgtacacagCTAACATTCGCCAAAGCAAGCTAGCTACTAATAGTGCAACCGTAAGTAACAATACAGATGAAGAtgaaaaatgatcaggcctactagtGTACATCTTATTATAGAAATTATTGTTGAAAActagtctaggttggaactgttgctgttaaaatacaataataataaccgGAATAAACTGtggcaaacacactcacacagttctgggttgctcatctacaacaggaagcagtctcctgcctgactgagaaagcagtagatgttctggtccagtttggcaccacatacctatgtgagtcAGGGTTCTCAACTCTGACATACTTAAAAAA

Function

symbol description
acss1 Predicted to enable AMP binding activity; ATP binding activity; and acetate-CoA ligase activity. Predicted to act upstream of or within acetyl-CoA biosynthetic process from acetate. Is expressed in several structures, including blood; central nervous system; mesoderm; neural plate; and notochord. Orthologous to human ACSS1 (acyl-CoA synthetase short chain family member 1).

NR:

description
acetyl-coenzyme A synthetase 2-like, mitochondrial

GO:

id name namespace
GO:0019427 acetyl-CoA biosynthetic process from acetate biological_process
GO:0003987 acetate-CoA ligase activity molecular_function
GO:0016208 AMP binding molecular_function

KEGG:

id description
K01895 ACSS1_2, acs; acetyl-CoA synthetase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608834.2 True 4012 mRNA 0.45 14 67252292 67271239

Neighbor

gene id symbol gene type direction distance location
LOC110527505 apmap coding downstream 16858 67226729 ~ 67235434 (-)
LOC110527477 LOC106576725 coding downstream 116503 67068696 ~ 67135789 (-)
si:dkeyp-121d4.3 LOC106576728 coding downstream 193325 67039268 ~ 67096685 (-)
znf318 znf318 coding downstream 213460 67014465 ~ 67038832 (-)
LOC110527436 ppp2r5d coding downstream 241646 66965664 ~ 67010646 (-)
LOC110527518 vsx1 coding upstream 17323 67288562 ~ 67291218 (-)
LOC110527584 LOC106576720 coding upstream 115508 67386509 ~ 67389299 (-)
abhd12 LOC106576716 coding upstream 144500 67415739 ~ 67443770 (-)
ninl ninl coding upstream 175202 67446441 ~ 67499228 (-)
LOC118966711 LOC106606039 coding upstream 243521 67514760 ~ 67515221 (-)
G74693 NA non-coding downstream 14725 67237109 ~ 67237567 (-)
G74692 NA non-coding downstream 15965 67236116 ~ 67236327 (-)
G74688 NA non-coding downstream 26601 67225402 ~ 67225691 (-)
tjap1 tjap1 non-coding downstream 368605 66806836 ~ 66883731 (-)
G74699 NA non-coding upstream 495 67271734 ~ 67271956 (-)
G74711 NA non-coding upstream 21897 67293136 ~ 67293369 (-)
G74715 NA non-coding upstream 26991 67298230 ~ 67298971 (-)
G74739 NA non-coding upstream 58496 67329735 ~ 67330005 (-)
G75208 NA non-coding upstream 65913 67337152 ~ 67337527 (-)
LOC110526867 LOC100136521 other downstream 2870936 64369803 ~ 64384521 (-)
G70013 NA other downstream 3974540 63277208 ~ 63277752 (-)
G69210 NA other downstream 4833996 62411522 ~ 62418296 (-)
LOC110527687 sncg other upstream 398350 67669589 ~ 67681775 (-)
sdhaf4 LOC106576700 other upstream 886722 68157900 ~ 68162024 (-)
G75682 NA other upstream 938941 68210180 ~ 68211706 (-)
LOC110527951 coda1 other upstream 1304354 68575379 ~ 68690343 (-)

Expression


Co-expression Network