LOC110532586


Basic Information

Item Value
gene id LOC110532586
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 67356070 ~ 67387886 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989805.1
ATGCACCGCGCATGAGCAACGCACACTATGAGCGTTCATAAAATTCCAATAGTTTCCCCTTCTCCTCAAAATTCTCTGGTTGAGTTTCGTGCACCAAGCTAATTATTTGACATATCGTGAGTATTAGTCAAGCCATCGTCCGAAATAGGAATATCGAACATGCAACTGGAATCAGAGTAAGTAACTACTTATGATCCACGCATAGGAGGAACACCAGAAATGACAGCCTTTAGTTCTGTATGGAACTGCAGAATGTGCCTTACATACACCAGTCACCATGAGGTTACCGAAAATCAGTGTTTTTGTCTTCTTGGGCTGCCAGGTGGCTTACCTGATGTTTGTTAAGCACCACTATGATGGTGTAAGGCCAGCCATCTCTAAAATACCACCTCACTTCCACTCCAGATTGGGCTTGTCGGGCAGCCTAAACAGACCAACCTCCTCAGAAGTGGTCAGCGGACGTTTCCAGTATGGCGTTATGTTTGATGCTGGGAGCACAGGGACAAGGATCCATGTCTTCAAGTTTCAACTAGAGGACAATGAGGCTCCTAAATTGGCACATGAAACATTCAGAGCAATAAAACCAGGTATATCTGCATATGCTGATGATCCAGAAAAGGGAATCAACTTCATGTACATTTGTAAAGAAGGGATCTTGGAGCTGTTGGAGGTGGCCCAGGACGGCATTCCCTCCTCTGTGTGGAGCAGCACTCCTCTGGTTCTCAAGGCCACCGCAGGCCTTCTGCCTGGGGATAAGGCCACACACCTACTGGACAGGATgcccatcctacccatgctagattacggcgACGTAATTGATatatcagcagGGATCTCTGCTTGGATCACAGTCAACTTCCTCATAGGGGGTCTCCACGACTCTGACACACCCACTGTGGGGATGCTGGATTTGGGAGGGGGGTCCACTCAGATCACCTTCTCCCCTCAGGATGAGAAGACCATCCGGGCCTCACCCATCGATTACATGACATCATTTCAGATGTTCAACTGCACCCACCCACTCTACTCACACAGCTACCTTGGTCTAGGCTTGATGTCGGCAAGACTAGCTGTCTTGGGAGGAATCGAGGGACAGCCTTGTATGTGGTTTTTCAATTTGCTTTCATCGTTGCCTTTAAAGACCCTCCCCGTCCCGATAAATAAGCCATTATCTAATCTTTTAATAACATGGACCAAGATTAATTCCTTGCATGCCAGCTGTTGCTGTGATTTAGTTGATTGTGCCAACAGATTAGAGGGCAGCAGCACAGAGCTAGTAAGTCCCTGCTTGGCCCCGGACTACTCTGGCCAATGGGAACATGCAGAAGTTCAGTATACTGTGAATGGCCAAGAAAGCAGGTACATTTTGTTTCTGTTTCAGGAGAGCCCATTTGAGTCCTGCCTTAGGAAAGTGGAGAAGTTGCTGTTTCAGAAGGTGAAGAATGCAGAGGAAGCCAAAGATATTGAATTCTATGCCTTTTCATACTACTATGACAGAGCTGTGGATCTGGGCGCTCTTGATGAGAAAACAGGAGGGACTATAAAAGTCAGCGATTACATTGATGCTGCTAAAAGTGTGTGCAACGGAATGACAGTTATTCCCAGAGAAAATCCTTTCCTTTGTCTGGGTCTAACCTACATCTCTCGGATGCTGCAAGAGCTTGGTTTTCCCAAAGAAAAAGTATTTAAGCTGGCGAGGAAGATTGATGAAGTGGAGACTAGTTGGGCTCTGGGGGCTTCTTTCCACTACATAGAGTCCCTCCACAGTCAGTGAGCTGCCATGACATGCCAGTGTTTCTGTGCTGCAAAGCACACTCAGGCCGTTTTCCCAAAGTGATTGCAGAGAAAAAGTACAACGTTTCCCGAATTTGTTTATTTAACCAGTTGCCTTTGGATGTTTGACTTTATTTTTGCAGGCGTGGTTTGTTTATACTTAATGAATGTTGGTTGTGTAATAAAGCACATGCTACTGCTGTAGTTTAAAAGAGCACGACCAGTTACATATTTGGTATTTGAATATAACATTGTGCTAAAATGTCATTTTCTGTGTACAATTCAGAATCAACTGGGTTAATGAAGGCATAAGTATTTagaataaaataacatttatatTCCA
>TU82631
tgaactattagaattttagcaaccaggaaacggTGGatcgatttctgcatattgcacctttaataaACAATTCATTGCCTTCTATAGACAGTGCCTAACCTGACCATTTGTTTGTGTATTAAGTTTTGTTTCTGTTTCAGGAGAGCCCATTTGAGTCCTGCCTTAGGAAAGTGGAGAAGTTGCTGTTTCAGAAGGTGAAGAATGCAGAGGAAGCCAAAGATATTGAATTCTATGCCTTTTCATACTACTATGACAGAGCTGTGGATCTGGGCGCTCTTGATGAGAAAACAGGAGGGACTATAAAAGTCAGCGATTACATTGATGCTGCTAAAAGTGGTAAGACAGCGCCCTCATGCTGCAGTATGTGGTTCGCTGCTACGGAACTGAATATGAACTTGACTTATCCCTTTTAATCAATGGTTTAATTATTGGAATTTAGTGAATACTTGCAAGAAATCACCATTTTCTCCCAGTGTGCAACGGAATGACAGTTATTCCCAGAGAAAATCCTTTCCTTTGTCTGGGTCTAACCTACATCTCTCGGATGCTGCAAGAGCTTGGTTTTCCCAAAGAAAAAGTATTTAAGCTGGCGAGGAAGATTGATGAAGTGGAGACTAGTTGGGCTCTGGGGGCTTCTTTCCACTACATAGAGTCCCTCCACAGTCAGTGAGCTGCCATGACATGCCAGTGTTTCTGTGCTGCAAAGCACACTCAGGCCGTTTTCCCAAAGTGATTGCAGAGAAAAAGTACAACGTTTCCCGAATTTGTTTATTTAACCAGTTGCCTTTGGATGTTTGACTTTATTTTTGCAGGCGTGGTTTGTTTATACTTAATGAATGTTGGTTGTGTAATAAAGCACATGCTACTGCTGTAGTTTAAAAGAGCACGACCAGTTACATATTTGGTATTTGAATATAACATTGTGCTAAAATGTCATTTTCTGTGTACAATTCAGAATCAACTGGGTTAATGAAGGCATAAGTATTTagaataaaataacatttatatTCCACATCTTTATTAAATTATTTTGCTCAGACAAACCAAGCCACTGACATTTTCACTATAAACAGATGAATGTTCTAATCTTTAAAATGTTACATTAGGGACTCATAGGAATGCATCACACCACTCTCTCAGGCACTGGGAGCAGGATGTAGCATTCCTGGTGTTGGCTCCGCTGGTGTCTTTCAGCCACTCAGTGAACAGCTCCCCATCCTTCCGCAGCAGCAGGTACTGACCCAGAACCACAAAGGCCTAAGAAGGAGATGCAGCGGTTATCCTACATATTACTTTGTTGCAGTGAGCCTGCCCTTAAGTGCAGGTCAGTACTGTGGTGCTACTGTCCATGGTGGGAAAATCATCAAAACAAGCCTTGTCCTGGGACCATTTACCAGTCCCCATTTGCCACGAAGCCAACGCCTTGACAACTTAAGgcgcaggagctccacaatacttgaCCTAACGTTAACATTCTAAGaggtcattttttaaaatctagTCTAGAATGCATAGCATGTGAAGCGCTGTAAAAAACGAACGAATTTACTCTGTCAAAACCTTGCTCCTCCAGTTTTTTTCCCAAGACCTCGCCAATTCCCGAAAGTGCAGTCACCGGTTTATCGCCCATGGGTTCTGCAACGAAGTCCCTGTGCTTCTGAGAAGTGGTCGACATTTCTGCAAGAGACAGCTGCGCAATGATGGTCTAGTAGTCAAACAACTATGCTGTCTGTGCTAACTCACTCTAATAACATCTGCTCTAGGCGTGTCTGTGCGCCATATGGTACCTACAGCTTCCAGTTAATATTTCAGTAGGCATATGTTGAAATAACTTACACTATTGTATTTCACGGCCTTACCCGAGACAATGGACACACTGGCCTTCACTAAT

Function

NR:

description
ectonucleoside triphosphate diphosphohydrolase 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989805.1 False 2116 mRNA 0.45 15 67356070 67387007
TU82631 True 1891 lncRNA 0.42 3 67385773 67387886

Neighbor

gene id symbol gene type direction distance location
cytf cytf coding upstream 128683 67223308 ~ 67227387 (+)
LOC110527498 syndig1 coding upstream 161344 67143452 ~ 67194726 (+)
mea1 mea1 coding upstream 393934 66958838 ~ 66962136 (+)
dlk2 LOC106576732 coding upstream 401979 66885437 ~ 66954091 (+)
lrrc73 lrrc73 coding upstream 553528 66793420 ~ 66802542 (+)
pygb pygb coding downstream 1034 67388041 ~ 67413285 (+)
gins1 gins1 coding downstream 56699 67443706 ~ 67446493 (+)
aifm2 amid coding downstream 112180 67499187 ~ 67506681 (+)
psda LOC106576711 coding downstream 141604 67528611 ~ 67575049 (+)
glud1 gdh01 coding downstream 209670 67596677 ~ 67638420 (+)
G74767 NA non-coding upstream 6681 67348787 ~ 67349389 (+)
G74759 NA non-coding upstream 18482 67337223 ~ 67337588 (+)
G74686 NA non-coding upstream 27170 67323906 ~ 67328900 (+)
G74662 NA non-coding upstream 69072 67286790 ~ 67286998 (+)
G74660 NA non-coding upstream 70912 67284482 ~ 67285158 (+)
G74852 NA non-coding downstream 125422 67512429 ~ 67512806 (+)
G74851 NA non-coding downstream 126844 67513851 ~ 67514529 (+)
G74814 NA non-coding downstream 189651 67576658 ~ 67576949 (+)
G74799 NA non-coding downstream 199361 67586368 ~ 67586598 (+)
G74875 NA non-coding downstream 203229 67590236 ~ 67590560 (+)
G74139 NA other upstream 571101 66784335 ~ 66784969 (+)
G74067 LOC106576735 other upstream 597086 66756207 ~ 66758984 (+)
LOC118965274 LOC106576739 other upstream 931989 66417495 ~ 66424081 (+)
G73515 NA other upstream 1067601 66287679 ~ 66288469 (+)
LOC110527164 LOC106576754 other upstream 1433785 65915581 ~ 65922285 (+)
G75747 NA other downstream 987498 68374505 ~ 68374929 (+)
G78121 NA other downstream 3184658 70571665 ~ 70654961 (+)
ccdc85a ccdc85a other downstream 3649463 71036440 ~ 71076239 (+)
G82111 LOC106577091 other downstream 6164609 73551616 ~ 73571737 (+)
G83836 NA other downstream 7522218 74909225 ~ 74909806 (+)
G74778 LOC106581475 non-coding upstream 6849 67378576 ~ 67378924 (+)
G74776 NA non-coding upstream 7846 67377673 ~ 67377927 (+)
G74773 NA non-coding upstream 14817 67370715 ~ 67370956 (+)
G74772 NA non-coding upstream 15849 67369698 ~ 67369924 (+)
G74750 NA non-coding upstream 17679 67365709 ~ 67368094 (+)

Expression

LOC110532586 Expression in all Baseline Samples

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LOC110532586 Expression in each Bioproject

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LOC110532586 Expression in each Sample
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Co-expression Network