LOC110527584 (LOC106576720)


Basic Information

Item Value
gene id LOC110527584
gene name LOC106576720
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 67386509 ~ 67389299 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021608968.2
ATCGTCAGTCTCATTTAATTATCTACAGGTGTTTTAGTGCGTACATTCGCGCACTTTTATAGCACGTGATCCGTCAAATCATAAACGCATGGTAACAATTAGTGAAGGCCAGTGTGTCCATTGTCTCGGGTAAGGCCGTGAAATACAATAGTAAATGTCGACCACTTCTCAGAAGCACAGGGACTTCGTTGCAGAACCCATGGGCGATAAACCGGTGACTGCACTTTCGGGAATTGGCGAGGTCTTGGGAAAAAAACTGGAGGAGCAAGGTTTTGACAGAGCCTTTGTGGTTCTGGGTCAGTACCTGCTGCTGCGGAAGGATGGGGAGCTGTTCACTGAGTGGCTGAAAGACACCAGCGGAGCCAACACCAGGAATGCTACATCCTGCTCCCAGTGCCTGAGAGAGTGGTGTGATGCATTCCTATGAGTCCCTAATGTAACATTTTAAAGATTAGAACATTCATCTGTTTATAGTGAAAATGTCAGTGGCTTGGTTTGTCTGAGCAAAATAATTTAATAAAGATGTGGAatataaatgttattttattctAAATACTTATGCCTTCATTAACCCAGTTGATTCTGAATTGTACACAGAAAATGACATTTTAGCACAATGTTATATTCAAATACCAAATATGTAACTGGTCGTGCTCTTTTAAACTACAGCAGTAGCATGTGCTTTATTACACAACCAACATTCATTAAGTATAAACAAACCACGCCTGCAAAAATAAAGTCAAACATCCAAAGGCAACTGGTTAAATAAACAAATTCGGGAAACGT
>XM_021608984.2
TACCATCAGTAGCCTATCGTCAGTCTCATTTAATTATCTACAGGTGTTTTAGTGCGTACATTCGCGCACTTTTATAGCACGTGATCCGTCAAATCATAAACGCATGGTAACAATTAGTGAAGGCCAGTGTGTCCATTGTCTCGGAAATGTCGACCACTTCTCAGAAGCACAGGGACTTCGTTGCAGAACCCATGGGCGATAAACCGGTGACTGCACTTTCGGGAATTGGCGAGGTCTTGGGAAAAAAACTGGAGGAGCAAGGTTTTGACAGAGCCTTTGTGGTTCTGGGTCAGTACCTGCTGCTGCGGAAGGATGGGGAGCTGTTCACTGAGTGGCTGAAAGACACCAGCGGAGCCAACACCAGGAATGCTACATCCTGCTCCCAGTGCCTGAGAGAGTGGTGTGATGCATTCCTATGAGTCCCTAATGTAACATTTTAAAGATTAGAACATTCATCTGTTTATAGTGAAAATGTCAGTGGCTTGGTTTGTCTGAGCAAAATAATTTAATAAAGATGTGGAatataaatgttattttattctAAATACTTATGCCTTCATTAACCCAGTTGATTCTGAATTGTACACAGAAAATGACATTTTAGCACAATGTTATATTCAAATACCAAATATGTAACTGGTCGTGCTCTTTTAAACTACAGCAGTAGCATGTGCTTTATTACACAACCAACATTCATTAAGTATAAACAAACCACGCCTGCAAAAATAAAGTCAAACATCCAAAGGCAACTGGTTAAATAAACAAATTCGGGAAACGT
>XM_021608976.2
CAGAGGTGGGAATTATGATAAATGTCGACCACTTCTCAGAAGCACAGGGACTTCGTTGCAGAACCCATGGGCGATAAACCGGTGACTGCACTTTCGGGAATTGGCGAGGTCTTGGGAAAAAAACTGGAGGAGCAAGGTTTTGACAGAGCCTTTGTGGTTCTGGGTCAGTACCTGCTGCTGCGGAAGGATGGGGAGCTGTTCACTGAGTGGCTGAAAGACACCAGCGGAGCCAACACCAGGAATGCTACATCCTGCTCCCAGTGCCTGAGAGAGTGGTGTGATGCATTCCTATGAGTCCCTAATGTAACATTTTAAAGATTAGAACATTCATCTGTTTATAGTGAAAATGTCAGTGGCTTGGTTTGTCTGAGCAAAATAATTTAATAAAGATGTGGAatataaatgttattttattctAAATACTTATGCCTTCATTAACCCAGTTGATTCTGAATTGTACACAGAAAATGACATTTTAGCACAATGTTATATTCAAATACCAAATATGTAACTGGTCGTGCTCTTTTAAACTACAGCAGTAGCATGTGCTTTATTACACAACCAACATTCATTAAGTATAAACAAACCACGCCTGCAAAAATAAAGTCAAACATCCAAAGGCAACTGGTTAAATAAACAAATTCGGGAAACGT
>TU83185
gttagttctcctaacctgctatgtaaacaGACCATCAATCCCCACCTACCATCAGTAGCCTATCGTCAGTCTCATTTAATTATCTACAGGTGTTTTAGTGCGTACATTCGCGCACTTTTATAGCACGTGATCCGTCAAATCATAAACGCATGGTAACAATTAGTGAAGGCCAGTGTGTCCATTGTCTCGGGTAAGGCCGTGAAATACAATAGTAAATGTCGACCACTTCTCAGAAGCACAGGGACTTCGTTGCAGAACCCATGGGCGATAAACCGGTGACTGCACTTTCGGGAATTGGCGAGGTCTTGGGAAAAAAACTGGAGGAGCAAGGTTTTGACAGAGCCTTTGTGGTTCTGGGTCAGTACCTGCTGCTGCGGAAGGATGGGGAGCTGTTCACTGAGTGGCTGAAAGACACCAGCGGAGCCAACACCAGGAATGCTACATCCTGCTCCCAGTGCCTGAGAGAGTGGTGTGATGCATTCCTATGAGTCCCTAATGTAACATTTTAAAGATTAGAACATTCATCTGTTTATAGTGAAAATGTCAGTGGCTTGGTTTGTCTGAGCAAAATAATTTAATAAAGATGTGGAatataaatgttattttattctAAATACTTATGCCTTCATTAACCCAGTTGATTCTGAATTGTACACAGAAAATGACATTTTAGCACAATGTTATATTCAAATACCAAATATGTAACTGGTCGTGCTCTTTTAAACTACAGCAGTAGCATGTGCTTTATTACACAACCAACATTCATTAAGTATAAACAAACCACGCCTGCAAAAATAAAGTCAAACATCCAAAGGCAACTGGTTAAATAAACAAATTCGGGAAACGTTGTACTTTTTCTCTGCAATCACTTTGGGAAAACGGCCTGAGTGTGCTTTGCAGCACAGAAACACTGGCATGTCATGGCAGCTCACTGACTGTGGAGGGACTCTATGTAGTGGAAAGAAGCCCCCAGAGCCCAACTAGTCTCCACTTCATCAATCTTCCTCGCCAGCTGAAAGCACACACAAATCACTTCCTTGACCATCGGATGCAGACCCATGGAAATGTATTGATTTCGATTGAAT

Function

NR:

description
barrier-to-autointegration factor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021608968.2 False 786 mRNA 0.41 3 67386747 67387983
XM_021608984.2 False 778 mRNA 0.41 3 67386747 67387998
XM_021608976.2 False 653 mRNA 0.41 3 67386747 67389299
TU83185 True 1085 TUCP 0.42 3 67386509 67388044

Neighbor

gene id symbol gene type direction distance location
LOC110527518 vsx1 coding downstream 95529 67288562 ~ 67291218 (-)
acss1 acss1 coding downstream 115508 67252292 ~ 67271239 (-)
LOC110527505 apmap coding downstream 151313 67226729 ~ 67235434 (-)
LOC110527477 LOC106576725 coding downstream 250958 67068696 ~ 67135789 (-)
si:dkeyp-121d4.3 LOC106576728 coding downstream 327780 67039268 ~ 67096685 (-)
abhd12 LOC106576716 coding upstream 26440 67415739 ~ 67443770 (-)
ninl ninl coding upstream 57142 67446441 ~ 67499228 (-)
LOC118966711 LOC106606039 coding upstream 125461 67514760 ~ 67515221 (-)
LOC118965291 NA coding upstream 125987 67515286 ~ 67516815 (-)
LOC110527634 nfkb2 coding upstream 185755 67575052 ~ 67593740 (-)
G75254 NA non-coding downstream 1372 67385119 ~ 67385375 (-)
G75237 NA non-coding downstream 12028 67374499 ~ 67374719 (-)
G75236 NA non-coding downstream 12653 67373883 ~ 67374094 (-)
G75234 NA non-coding downstream 18346 67368186 ~ 67368401 (-)
G75233 NA non-coding downstream 18643 67366873 ~ 67368104 (-)
G75246 pygb non-coding upstream 13242 67402541 ~ 67413256 (-)
G75314 NA non-coding upstream 129515 67518814 ~ 67519037 (-)
G75315 NA non-coding upstream 130614 67519913 ~ 67520212 (-)
G75319 NA non-coding upstream 135417 67524716 ~ 67524946 (-)
LOC110527436 ppp2r5d other downstream 376160 66965664 ~ 67010646 (-)
tjap1 tjap1 other downstream 563931 66806836 ~ 66883731 (-)
LOC110526867 LOC100136521 other downstream 3005391 64369803 ~ 64384521 (-)
G70013 NA other downstream 4108995 63277208 ~ 63277752 (-)
G69210 NA other downstream 4968451 62411522 ~ 62418296 (-)
LOC110527687 sncg other upstream 280290 67669589 ~ 67681775 (-)
sdhaf4 LOC106576700 other upstream 768662 68157900 ~ 68162024 (-)
G75682 NA other upstream 820881 68210180 ~ 68211706 (-)
LOC110527951 coda1 other upstream 1186294 68575379 ~ 68690343 (-)
LOC118965321 LOC106576963 other upstream 2693541 70082835 ~ 70088715 (-)

Expression

LOC110527584(LOC106576720) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 200.
End of interactive chart.

LOC110527584(LOC106576720) Expression in each Bioproject

Bar chart with 21 bars.
LOC110527584(LOC106576720) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.

Co-expression Network