LOC118966711 (LOC106606039)


Basic Information

Item Value
gene id LOC118966711
gene name LOC106606039
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 67514760 ~ 67515221 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118966711
AATAGCAGcctttattcacgagagtactcCACAGGTGATACAGTGTTCATCGTGTTCCGTAAGCAGCGGTTGCTTTTCCTGCACTGGTACCACCACGTCACTGTGCTGCTCTACTCCTGGTACTCCTACAAGGACCAGGTGGCTGGAGGCGGCTGGTTCATGACCATGAACTACTCTGTTCACGCACTCATGTATAGCTACTACGCAGTGCGGGCTACCGGGTGCCACGCCCCTTTGCCGTGGTCATCACCACCTTCCAGATCACCCAGATGGCCATGGGGCTGATGGTCAGTTAGCTGGTCTTCCGCTGGATGCAGGACGGGGACTGCCACTCCCACCTGAACAACATTGTGTGGAGTTCCCTCGTGTACCTCAGCTACctggtcctcttctcctccttctaccAGACTTACCTGAAAGACAAAGGTGGCAAACACTGGCAAGAGCTCCAAGACTGA
>TU83247
GTCAAATAGCAGcctttattcacgagagtactcCACAGGTGATACAGTGTTCATCGTGTTCCGTAAGCAGCGGTTGCTTTTCCTGCACTGGTACCACCACGTCACTGTGCTGCTCTACTCCTGGTACTCCTACAAGGACCAGGTGGCTGGAGGCGGCTGGTTCATGACCATGAACTACTCTGTTCACGCACTCATGTATAGCTACTACGCAGTGCGGGCTACCGGGTGCCACGCCCCTTTGCCGTGGTCATCACCACCTTCCAGATCACCCAGATGGCCATGGGGCTGATGGTCAGTTAGCTGGTCTTCCGCTGGATGCAGGACGGGGACTGCCACTCCCACCTGAACAACATTGTGTGGAGTTCCCTCGTGTACCTCAGCTACctggtcctcttctcctccttctaccA

Function

NR:

description
elongation of very long chain fatty acids protein 6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118966711 False 458 mRNA 0.55 1 67514760 67515217
TU83247 True 410 lncRNA 0.55 1 67514812 67515221

Neighbor

gene id symbol gene type direction distance location
ninl ninl coding downstream 15532 67446441 ~ 67499228 (-)
abhd12 LOC106576716 coding downstream 70990 67415739 ~ 67443770 (-)
LOC110527584 LOC106576720 coding downstream 125461 67386509 ~ 67389299 (-)
LOC110527518 vsx1 coding downstream 223542 67288562 ~ 67291218 (-)
acss1 acss1 coding downstream 243521 67252292 ~ 67271239 (-)
LOC118965291 NA coding upstream 69 67515286 ~ 67516815 (-)
LOC110527634 nfkb2 coding upstream 59837 67575052 ~ 67593740 (-)
LOC110527672 NA coding upstream 123514 67638731 ~ 67642121 (-)
LOC110527687 sncg coding upstream 154456 67669589 ~ 67681775 (-)
LOC110527713 bmpr1a coding upstream 210921 67726138 ~ 67793350 (-)
G75246 pygb non-coding downstream 101504 67402541 ~ 67413256 (-)
G75254 NA non-coding downstream 129385 67385119 ~ 67385375 (-)
G75237 NA non-coding downstream 140041 67374499 ~ 67374719 (-)
G75236 NA non-coding downstream 140666 67373883 ~ 67374094 (-)
G75234 NA non-coding downstream 146359 67368186 ~ 67368401 (-)
G75314 NA non-coding upstream 3597 67518814 ~ 67519037 (-)
G75315 NA non-coding upstream 4696 67519913 ~ 67520212 (-)
G75319 NA non-coding upstream 9499 67524716 ~ 67524946 (-)
G75322 NA non-coding upstream 13322 67528539 ~ 67529102 (-)
G75325 NA non-coding upstream 16377 67531594 ~ 67531823 (-)
LOC110527436 ppp2r5d other downstream 504173 66965664 ~ 67010646 (-)
tjap1 tjap1 other downstream 691944 66806836 ~ 66883731 (-)
LOC110526867 LOC100136521 other downstream 3133404 64369803 ~ 64384521 (-)
G70013 NA other downstream 4237008 63277208 ~ 63277752 (-)
sdhaf4 LOC106576700 other upstream 642744 68157900 ~ 68162024 (-)
G75682 NA other upstream 694963 68210180 ~ 68211706 (-)
LOC110527951 coda1 other upstream 1060376 68575379 ~ 68690343 (-)
LOC118965321 LOC106576963 other upstream 2567623 70082835 ~ 70088715 (-)

Expression


Co-expression Network