Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110527634 |
| gene name | nfkb2 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048565.1 |
| NCBI id | CM023219.2 |
| chromosome length | 95772356 |
| location | 67575052 ~ 67593740 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| nfkb2 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within angiogenesis and cholesterol homeostasis. Predicted to be located in cytoplasm and nucleus. Is expressed in male organism. Human ortholog(s) of this gene implicated in common variable immunodeficiency. Orthologous to human NFKB2 (nuclear factor kappa B subunit 2). |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0007165 | signal transduction | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036989819.1 | False | 6030 | mRNA | 0.54 | 32 | 67575054 | 67593740 |
| TU83286 | True | 475 | lncRNA | 0.43 | 1 | 67575052 | 67575526 |
67,566,000
67,568,000
67,570,000
67,572,000
67,574,000
67,576,000
67,578,000
67,580,000
67,582,000
67,584,000
67,586,000
67,586,000
67,588,000
67,590,000
67,592,000
67,594,000
67,596,000
67,598,000
67,600,000
67,602,000
67,604,000
67,606,000
NC_048565.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118965291 | NA | coding | downstream | 58239 | 67515286 ~ 67516815 (-) |
| LOC118966711 | LOC106606039 | coding | downstream | 59837 | 67514760 ~ 67515221 (-) |
| ninl | ninl | coding | downstream | 75826 | 67446441 ~ 67499228 (-) |
| abhd12 | LOC106576716 | coding | downstream | 131284 | 67415739 ~ 67443770 (-) |
| LOC110527584 | LOC106576720 | coding | downstream | 185755 | 67386509 ~ 67389299 (-) |
| LOC110527672 | NA | coding | upstream | 44991 | 67638731 ~ 67642121 (-) |
| LOC110527687 | sncg | coding | upstream | 75933 | 67669589 ~ 67681775 (-) |
| LOC110527713 | bmpr1a | coding | upstream | 132398 | 67726138 ~ 67793350 (-) |
| LOC118965293 | ldb3 | coding | upstream | 203215 | 67796955 ~ 67813744 (-) |
| LOC110527725 | LOC106606152 | coding | upstream | 220299 | 67814039 ~ 67856689 (-) |
| G75331 | NA | non-coding | downstream | 35222 | 67539597 ~ 67539832 (-) |
| G75327 | NA | non-coding | downstream | 41093 | 67533742 ~ 67533961 (-) |
| G75326 | NA | non-coding | downstream | 41470 | 67533381 ~ 67533584 (-) |
| G75325 | NA | non-coding | downstream | 43231 | 67531594 ~ 67531823 (-) |
| G75322 | NA | non-coding | downstream | 45952 | 67528539 ~ 67529102 (-) |
| G75383 | NA | non-coding | upstream | 48719 | 67642459 ~ 67642675 (-) |
| G75384 | NA | non-coding | upstream | 49481 | 67643221 ~ 67643600 (-) |
| G75385 | NA | non-coding | upstream | 49950 | 67643690 ~ 67643964 (-) |
| G75413 | NA | non-coding | upstream | 129884 | 67723624 ~ 67725800 (-) |
| G75426 | NA | non-coding | upstream | 157727 | 67751467 ~ 67751829 (-) |
| LOC110527436 | ppp2r5d | other | downstream | 564467 | 66965664 ~ 67010646 (-) |
| tjap1 | tjap1 | other | downstream | 752238 | 66806836 ~ 66883731 (-) |
| LOC110526867 | LOC100136521 | other | downstream | 3193698 | 64369803 ~ 64384521 (-) |
| G70013 | NA | other | downstream | 4297302 | 63277208 ~ 63277752 (-) |
| sdhaf4 | LOC106576700 | other | upstream | 564221 | 68157900 ~ 68162024 (-) |
| G75682 | NA | other | upstream | 616440 | 68210180 ~ 68211706 (-) |
| LOC110527951 | coda1 | other | upstream | 981853 | 68575379 ~ 68690343 (-) |
| LOC118965321 | LOC106576963 | other | upstream | 2489100 | 70082835 ~ 70088715 (-) |
| G75356 | NA | non-coding | upstream | 7608 | 67583134 ~ 67583433 (-) |
| G75357 | NA | non-coding | upstream | 8456 | 67583982 ~ 67584381 (-) |
| G75358 | NA | non-coding | upstream | 8871 | 67584397 ~ 67585106 (-) |
| G75360 | NA | non-coding | upstream | 15328 | 67590854 ~ 67591084 (-) |
