LOC110527634 (nfkb2)


Basic Information

Item Value
gene id LOC110527634
gene name nfkb2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 67575052 ~ 67593740 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989819.1
CCCATCTTCTCCTGTCTCTCACCACAGCGTTCTGTAGTTCAAGGGCTGCGATCAACCTTGATGTGGTTTCAAAGCGGACAGTTCTGGTGGATCATTGGCCCACGTGCTCACAACACCCATCGTCTGGTTGGAGTATTTTCTGTTCCGAGGAAAGGATTGCATCGCAGTGTCTATGGAACCCAAGAGATTCTGACATGTGGCTTTAAGTGAAAACAGCAGCATGACCGACAAACCCAAAATTCATGTGTTCATGGGTGCCCCTCCCCTCACACCTGTGTCTGATGTTGATGAGGGAAAGTCTGGTCAGTGGAGGACCATGGAGCTCTGCTGGCAGGGGGGCAGACTGAGGGCCAGGGAAGATGAGGGTGGGATCCATGGAAGTGACGGTCGAGGTGAGATTGACGCTTCATCAGAGCCCGGAGAGCTGCTCAGTACCAGCAAGCACGGTACCAGTCTCCAAGGTCCTGAGACCCAAACCGGATTTCCCTTACAGAGAGAACCAGGCTGTAAAGAGACAACCCAGGCCGGCCTGGCCCCTTTGGCGAGCTCAACTCCCCAGAATGAGCAAACAGTCGTTAATGATGAGGACATGTGTTCTGAATCAGTGAAGGAGTATCTGGACAGCTGCTTCCCTGCCGGGCAGCCTGACCCAGGGCCTGAGTCTGCCCCTGAGAGAGCAGGCATCCAGTCAGATCCAGCCCCTGCTCAGTCTGTGTCTGTGGAGACGGAGTACCTCAGTGCATGGACACTCAGCCAGGCCCTGCTCCTGAGAGGAAGACTGGGGGGACAACCAGAAACCAGCCCTGTGAAAACCAGACTTCCACAAACGCCACCTAAATCCACACCATCCACTTTCACCAGCTCCCCAGAGCTGTACAGCCCAGCCACCCCCACTCAGTCCCCCAGAGAGCGGGGCCAAGGAGGGACCCAGCAGGGCTCCATGGAGCTCTTCTATGAGCCCCTGCTGAGCCAGAGgcaggaggaaggaggggtgaTACTGGAGGCCACTGCTGATGGGGTGCTCTGCTCTCAGCGTAACCCAATGGGGAACAAAGAAGTGGGTGTAGTCTCCAAAAGCCCTCTCCCATCACCTAGATCTCCTGTAAATACCTCACCGGAACCCCCAGCCCCTAAAAGGAGTAAAGTCTCCCCCACAATAGACAGAACTGATCAGTCATCAGACCAGACTACAGTGAAGGGTTGTGTTACTTCCCAAGCCCACACCACCCTGGCTAGATGTGGCACCCAGGGAGTGCGTTACTCCATCTTAGTGGCCGTGGTGCACCCGTGTCATCTGAAGGAGATTAGAGTGAGGTCCGGGGCGTCTGCTGGCTCCTGTATCCCCCTGGCCTCTGTGGTGGTTACTGACCAATCAGAAGTGGAGATGAAGGTGGTCCTGTGGAGGAGGGCAGCATTCTGGGCCCTTACTGTGTATTCTGGAGATGTGCTGCTCATCACTGGTGTGATGGTGAATGAGgacaagtggagaggagagacggtTCTGCAGTCGTCGTACAGCAGCAAGCTCCTCAACCTGGGCCAAGTCACTGGCAGCAGCTCACCTCTAGTCCCACAGAATGTGAATGGCCGGACACTGAGGTCTCTGTGTGGTTACCTGCGTGAGAAGCGTCCCCTGCTGGTGTCCCTCCCTCCTCGCGTCCCTCAGGATCCTAACACCATCGCCCACGCCCGTCTCAGGACCCTGAGACCTGACACGCTGGTGCATGCCCTGCTTCGAATCACACACACTGAGATGATCACAGGGTGGCGAGCCGAGGCAGAGGGCACGTCCAGGGTAGGAGGAGTACTGAAGGCTGTGCTGACTGTAGAGCAGGGGGATGGACAGCAGGGGGCAGTGGTGCTCTGGGGAGCTGCCTTGACCTGGCTGCAGCGTATCAACAGGAACAAAGATGCAGTGTGGGTTTTCCGTTTGCTCCTGGTAAGAGAGAGTATGACGACAGGCCTGCTGGAGCTGCACTCCACCCCCTGGGGCTCCTGTGAGCCTCTCTTCCCCGACGACACGCGGGCGCTGGAGTTCTACCGGCCAGGCCCTGCCAAACATACCAGCACCAGCTTGGAGATAGACCTGCACACTCTCCTGTCCCAGAAGTACACTGGTGATGTGGAACTGAGAGTTCACGTCACAGCTTTCCAGTTTCAAGGCAGCCCCTCCCAGAATGCACTGCAGCGGATGGACAGCGACACGCATCTGGAGAGTATCCTGGACACAGTGTCAGGTGACATCACGTTCACAGGTTGTGGGCGCTGCGCTGCCGAACTGGACACAGATGACAACGGGATCTACTGTCCCTGCTACCCCTGCCTCCCCCATACTGGAGTACGACGCTATTACAGGCCAGTAATACTGACAGTGAAGAATGGGGAAAGCCAGGTGTGTGTGCAGGTGCCACCTGTCCTGCTGCAGAAGATCCTGCTCGACACTCCTCCTGACAAGCTGAGCAAGACGGTCGCTCCAGGGTCAGATGTGAGGTTAGTCCAGGTAGTGGCTGAGAGGATTTATTCATTGCTGTCCATTCCCAGACGCACCTTCCTCCTTACCGTCCGCAGCCACTTCCTGTGTGACGAGAACAGCGTCCCCACTGCCCAGGACTTTCTACTGCTGGATTTTCATGACCCCAAATCATATATCATCATCTATGATCCACTGACAGGCATCATGTCTGAAGCACTAAGAATGGATGAAGCTCAGTACAGCATGAAAATGATTGAAAATGAGCTGATGATGAACTTATCGACTTATGAGTTCATGCCACCTGTGGAGGTCAAGAGTGAGCCCTACATACCCGAGACAGTTCATGGACCCTACATTCAAATACTTGAGGAGCCCAAACAGAGAGGCTTCAGATTCCGCTATGAGTGTGAGGGTCCGTCCCACGGTGGGCTCCCAGGGGCCTCCAGCGAGAGGAACAGGAGAACCTATCCCACTGTCAAGGTGTCTAACTATGTGGGGATAGCCAGGGTAGAGGTGCAGCTGGTGACCCACTCTGACCCCCCCCAGGTCCACGCTCACAGTCTGGTGGGGAGGCACTGCTGCACGGAAAGTGGAAAATGCAGTGTGGATGTGGGCCCCAATGAACTCACAGCACAGTTCAGTAACCTGGGCATCCTCCATGTCACAAAGAAAGGGGTGGGGGAAGTGTTGTTCAAGAGACTGAGAGACGAGAAGAGGAGACAAAGGGGGCAGCACTACCATTTTACTGATGCAGAGGAACAAGCCATATTGAGAGAAGCCAACGAGCTGGGCAGGATCATGGACCTGAACATAGTGAGGTTAAAGTTCACGGCCTACCTCCAGGACAGTAACGGAGGGTTCTCTAGGGCCCTGAAGCCAGTGGTCTCCAATCCCATCTTTGACAGCAAGTCACCCAACGCTTCCAACCTGAAAATCTCCCGTATGGATAAGACCTCTGGGTCTGTGCTGGGAGGGGATGAGATCTTCCTACTGTGTGACAAAGTACAAAAAGATGATATTGAGATCCGCTTCTatgaggaggatggaagctgggAGGCCTTTGGTGACTTCTCTCCAACTGATGTCCACAAGCAGTATGCCATCGTGTTTAAGACACCCCCGTACCACAGCACAGAGATCGATCGTTCAGTCACTGTGTTCCTCCAGTTGAAAAGGAAGAAAGTGGGAGACTGCAGCGACCCCAAGCAGTTCACCTACGTTCCTCAAATTCAAGATAAAGAGGAGGTTCAACGTAAGAAGCAGAAGCCCCTCCCCTATAATGACCCATGGAGAGGGCCTCTGGGAGGGGCTGGGGGGGCAGGGAGAGGTGCCGGAGGACCAGGAGGAGCAGGATTCCAGTTTAACCAGCAGATGAATGGATCAGGGTGGATGGGGGGTGGATTCACTTGTTTTGGGGGTGGTGGAGCCCAGATGTCAGGCACCACTGCCCAGGCTGAGGGTACCCAGCAGCAAGCTGGAGGGATGGCCAAACAGATGCCAGGACAGACGCCAGGACAGACAGCCTCACCACCACTACAACAGCAGCTCTTCCAGATTGCTGCTACTCTCCAGAGCAGGGCCACTCGGATGACCAAGCAGACAGCTGGGGCTCTCCTACAGTACTGCACAACTGGGGACGTCCGGGTCCTTCTGGCAATGCAGAGACACCTATGTGGGGTCCAGGATGAAAACGGAGACACGCCTTTGCACCTGGCCATCATTCACCAGCAGTCAGCTGTGATCCAGCAGCTGGTTCATACACTCCTCACCATCCAGCAACGCAAAGTCCTCGACAAGCTCAACCACCTCAGCCAGACTCCTCTCCATCTGGCGGTGATCACCAGGCAGGTTAAGGTGGTGGATGTTCTCCTGAGAGCCGGGGCTGACCCCACCCTGCTGGACCGGGACGGCCGGACCCCCCTGCACCTGGCAGCGCTGGCCGGGGACGACGTCACACTCAGGGTCCTCCTGGGGCACCTAGGAGAACGTTACAACCACCTGGTCAACATGGCCGACTATCATGgtctccatcctctccatctggCTGTTCGCAAGGGAGGAGAGCGCTGTCTACGTCTGCTGGTGGGGAGCGGGGCTAAGATCAATGACCCCGAGCGGGGGAGTGGATGCTCCGCCCTCCACCTGGCTGTTAGAGAGAACCTCTTGAAAGTGGCCTGCACTCTCATCACAGAGCTGAAAGCAGACGTAAACATGTGTACGTTTGGGGGTAACACTCCTCTCCATCTGGCCGCCAGTCAGGGCTCCCCCACTCTCTGCTCCATGCTCATTGCTGCAGGAGCCGATAAGAATCTGGAGAATGATGAGCCGCTCTTCTTAAGCTcctcttcctctgatgaggagcaAGAGGATGGACCAATAAGAGATTTCAGAGAGTTACAGATCCAACAGCAACCAACCATCCCACCACCGTTGGGGAAAGAACAAGTCAACCCTCGTAAGAGACCAGCAACAGGACATACACCCTTTGACCTTACTAAATGTCAAAAGGTGAGAGACCTTCTAGACACCAGACAGAGACCCAAGTCCAGCCAACACTCAAGTAAAAAGCCTAAACCAAACAGCATGGACGAAAGTGAGCAGCTAGACAGTGAGACGCTCCATAAACTGTGTGAGCTCCTCAGTCTGGGCGATGTGCCCTGGAGACAGCTGGCAGAGAAACTCAACATGCTCTCCCTGGCACACCTGTACCAGGAGAGTCCCTCTCCCTGCTACAAACTGCTGGAGAATTACAAGttgGGTGGCGGTCCAGTGGAAGGACTGGTGGAGGCTCTGCAGTCTCTGGGTCTGACTGAAGGAGTGCGACTGCTGAGACGGGCTGAGCTGAGAGAGGACAAACAGAACACAGATCAGACAGTGGACAGCGGCTTTGGGAGTCAGCCAATGGATGAGCCAGCCTTGGCCAACCAGTGAGCACCAGGAAGGGTGAGGGGTAGGACCAGCTCGGTGGGTGGGAGGTTTCAGTCCAGCATTTCATCTGGGAGATATAACAAACCCTGTTCAGCACACCCTATGGGGAAACCATTGAGAATTGGATGTCATTCCAGAGCCTTTGCTGATGAATGCAGAATTCTCTCTGCCATGACTGCAACGTTGACAACTCACATTGTTGGGCATCCAGATAATGTTCTTGTACGTTATTTTTCTTATTCAGACAGAAAGCCGAAGGCAACAAACTAAGGACAACTCGGTCTCAATATGTACAGTAATTATAAGTGGCCTCATCTCCTTACATTATTTCTGATGGTGAAAGTTGACAAAAGATAGGCTGGTCTTTTTTAGTGGTACATTGACACCTTCCAAAAAGTCAAAGTATAaataagaatctcaaatatgcaATGTCAAATTGTTGAATGGAATTATGAATCAATTTCACACATATTTATTGGCTGACAGTCTTACTAATACTGTGTATTAATTTGGTTTAACATTCACCAAATAATTGTACAGCCATACTGCAGGTGTGAAACGTTTGCGAGTGTATTTGCCATGTAATGTTAACTATATCTTGTCGTTGAATTAAATGAATTTCTGACAAC
>TU83286
AGAATTCTCTCTGCCATGACTGCAACGTTGACAACTCACATTGTTGGGCATCCAGATAATGTTCTTGTACGTTATTTTTCTTATTCAGACAGAAAGCCGAAGGCAACAAACTAAGGACAACTCGGTCTCAATATGTACAGTAATTATAAGTGGCCTCATCTCCTTACATTATTTCTGATGGTGAAAGTTGACAAAAGATAGGCTGGTCTTTTTTAGTGGTACATTGACACCTTCCAAAAAGTCAAAGTATAaataagaatctcaaatatgcaATGTCAAATTGTTGAATGGAATTATGAATCAATTTCACACATATTTATTGGCTGACAGTCTTACTAATACTGTGTATTAATTTGGTTTAACATTCACCAAATAATTGTACAGCCATACTGCAGGTGTGAAACGTTTGCGAGTGTATTTGCCATGTAATGTTAACTATATCTTGTCGTTGAATTAAATGAATTTCTGACAACGG

Function

symbol description
nfkb2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within angiogenesis and cholesterol homeostasis. Predicted to be located in cytoplasm and nucleus. Is expressed in male organism. Human ortholog(s) of this gene implicated in common variable immunodeficiency. Orthologous to human NFKB2 (nuclear factor kappa B subunit 2).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007165 signal transduction biological_process
GO:0005634 nucleus cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989819.1 False 6030 mRNA 0.54 32 67575054 67593740
TU83286 True 475 lncRNA 0.43 1 67575052 67575526

Neighbor

gene id symbol gene type direction distance location
LOC118965291 NA coding downstream 58239 67515286 ~ 67516815 (-)
LOC118966711 LOC106606039 coding downstream 59837 67514760 ~ 67515221 (-)
ninl ninl coding downstream 75826 67446441 ~ 67499228 (-)
abhd12 LOC106576716 coding downstream 131284 67415739 ~ 67443770 (-)
LOC110527584 LOC106576720 coding downstream 185755 67386509 ~ 67389299 (-)
LOC110527672 NA coding upstream 44991 67638731 ~ 67642121 (-)
LOC110527687 sncg coding upstream 75933 67669589 ~ 67681775 (-)
LOC110527713 bmpr1a coding upstream 132398 67726138 ~ 67793350 (-)
LOC118965293 ldb3 coding upstream 203215 67796955 ~ 67813744 (-)
LOC110527725 LOC106606152 coding upstream 220299 67814039 ~ 67856689 (-)
G75331 NA non-coding downstream 35222 67539597 ~ 67539832 (-)
G75327 NA non-coding downstream 41093 67533742 ~ 67533961 (-)
G75326 NA non-coding downstream 41470 67533381 ~ 67533584 (-)
G75325 NA non-coding downstream 43231 67531594 ~ 67531823 (-)
G75322 NA non-coding downstream 45952 67528539 ~ 67529102 (-)
G75383 NA non-coding upstream 48719 67642459 ~ 67642675 (-)
G75384 NA non-coding upstream 49481 67643221 ~ 67643600 (-)
G75385 NA non-coding upstream 49950 67643690 ~ 67643964 (-)
G75413 NA non-coding upstream 129884 67723624 ~ 67725800 (-)
G75426 NA non-coding upstream 157727 67751467 ~ 67751829 (-)
LOC110527436 ppp2r5d other downstream 564467 66965664 ~ 67010646 (-)
tjap1 tjap1 other downstream 752238 66806836 ~ 66883731 (-)
LOC110526867 LOC100136521 other downstream 3193698 64369803 ~ 64384521 (-)
G70013 NA other downstream 4297302 63277208 ~ 63277752 (-)
sdhaf4 LOC106576700 other upstream 564221 68157900 ~ 68162024 (-)
G75682 NA other upstream 616440 68210180 ~ 68211706 (-)
LOC110527951 coda1 other upstream 981853 68575379 ~ 68690343 (-)
LOC118965321 LOC106576963 other upstream 2489100 70082835 ~ 70088715 (-)
G75356 NA non-coding upstream 7608 67583134 ~ 67583433 (-)
G75357 NA non-coding upstream 8456 67583982 ~ 67584381 (-)
G75358 NA non-coding upstream 8871 67584397 ~ 67585106 (-)
G75360 NA non-coding upstream 15328 67590854 ~ 67591084 (-)

Expression


Co-expression Network