LOC110527672


Basic Information

Item Value
gene id LOC110527672
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 67638731 ~ 67642121 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609108.2
GCAGAGCCCTGAGAGGCATAGGATCAGGGACAGAAAGTGCCAACCTCTATAAGACTCCATGACCACCTTTGCCCCCACACACTACTTTGAAATATTCTCTCCTGACACAACCTGCCTTAGGGACACTACTGACTACTGTTCAGAGACATGTCTTTCCTCAAAGGCATTTTGGGCAACTCAGCGGACAAATATGTCGACCAGGCAGTGGATACGGCAGCTAAAGCTGCCAAAGTCAAGGTGAAGACTATGCTTGACTCTAAGAAGGATCCCAGCGGGGGAAGCAGTGGTAAAGAGAAGGTGAAGCCCACAGTTGGAGGAGATGATTCAAAGAAGAAGGAGTCCAGCAAGGATATCAGTGGAGGTATCGGCGGTATTGGAGGATTAATGGATGGCAACAAGGGCAAAGAGGAAGGATGCTTTGGAAGTTTCTTATCTGGCAAGGATGAGAAAGAGTCAAGTAGCGGAGGTGGTGACCAAGACCTGAACGACCTACTGGGAGACATTGCAGGAGATATATCTGGCGAGAAAGATGGCAACTAGAAGGACAACAGCAACGCAGACCAAGTGTGATCATTTGGGAAGTCTCTTTGGCTGAGTCAGACTGAAGCCGTTTCTTTTTCTCAATGTAATCTTAATGGTCCTATCCCTctctcacctgtgtgtattttcctCACTAGCAATGTCTCAATGATGTCCCTGTTCCCCAGGGGCATTTCTCTGATATACACATGGTCTATGCATGTCTAAGATCTGAATTGGACATAAGAGGAACTGGAGCTAGGGATGAACCTATTCTGGTAACAGATCAATCAAACTGACATACCTCTGGATATAGCCTATGAAGAATATTATGACAACTCAATACTGTCACAATGCAttgtgtaatgttaatgttttgtattatatttgaaaagtaaataaaaatgtttagcCCAAAAGTCTGTTGAATGCTCAGATGAGCAAGGATCAgaccctttaaaaaaatgttggactaaaatgacatacccaaatctaactcaGGACCTGATGATCAATCTGACATACCTCTGTATTACCTATGAAGAATATGATTTTATTGACCACCCAATACTGTCACAATGCAttgtgtaatgttaatgttttgtattatATCTTAAAAGTAAATCAAAAGTTTTTTTAGTTTTagatttcattttttaaattacctTTATTtcacttggcaagtcagttaagaacaaactcttatttacaatgatggcctaccggggaacagtgggttaacttgtccaggggcagaacgacagatttttaccttgtcagctcggggaatcgATCTGGAAACCTTttgtttactggcccaatgctctaaccactaggctacctgtcgcctcAAATGCCTGTCTGAGCAGGGATCTGACCCCTTTGACATCACCAAATCTACCGgactgtagctcaggacctgaagcaaggatatgcatattcttgataccatttgaagtttgtgtaaatgtgaaattaatgtcgGAGAACACAtttgatctggtaaaagataatacaaacaaaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609108.2 True 1543 mRNA 0.42 3 67638731 67642121

Neighbor

gene id symbol gene type direction distance location
LOC110527634 nfkb2 coding downstream 44991 67575052 ~ 67593740 (-)
LOC118965291 NA coding downstream 121916 67515286 ~ 67516815 (-)
LOC118966711 LOC106606039 coding downstream 123514 67514760 ~ 67515221 (-)
ninl ninl coding downstream 139503 67446441 ~ 67499228 (-)
abhd12 LOC106576716 coding downstream 194961 67415739 ~ 67443770 (-)
LOC110527687 sncg coding upstream 27552 67669589 ~ 67681775 (-)
LOC110527713 bmpr1a coding upstream 84017 67726138 ~ 67793350 (-)
LOC118965293 ldb3 coding upstream 154834 67796955 ~ 67813744 (-)
LOC110527725 LOC106606152 coding upstream 171918 67814039 ~ 67856689 (-)
LOC110532592 opn4 coding upstream 230838 67872959 ~ 67899973 (-)
G75360 NA non-coding downstream 47647 67590854 ~ 67591084 (-)
G75358 NA non-coding downstream 53625 67584397 ~ 67585106 (-)
G75357 NA non-coding downstream 54350 67583982 ~ 67584381 (-)
G75356 NA non-coding downstream 55298 67583134 ~ 67583433 (-)
G75383 NA non-coding upstream 338 67642459 ~ 67642675 (-)
G75384 NA non-coding upstream 1100 67643221 ~ 67643600 (-)
G75385 NA non-coding upstream 1569 67643690 ~ 67643964 (-)
G75413 NA non-coding upstream 81503 67723624 ~ 67725800 (-)
G75426 NA non-coding upstream 109346 67751467 ~ 67751829 (-)
LOC110527584 LOC106576720 other downstream 250687 67386509 ~ 67389299 (-)
LOC110527436 ppp2r5d other downstream 628144 66965664 ~ 67010646 (-)
tjap1 tjap1 other downstream 815915 66806836 ~ 66883731 (-)
LOC110526867 LOC100136521 other downstream 3257375 64369803 ~ 64384521 (-)
G70013 NA other downstream 4360979 63277208 ~ 63277752 (-)
sdhaf4 LOC106576700 other upstream 515840 68157900 ~ 68162024 (-)
G75682 NA other upstream 568059 68210180 ~ 68211706 (-)
LOC110527951 coda1 other upstream 933472 68575379 ~ 68690343 (-)
LOC118965321 LOC106576963 other upstream 2440719 70082835 ~ 70088715 (-)

Expression


Co-expression Network