LOC110527687 (sncg)


Basic Information

Item Value
gene id LOC110527687
gene name sncg
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 67669589 ~ 67681775 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609131.2
TCACTCAGCTGCTCTCCTTGTTGAGGGTGTTCCAATCTGCCTCAGCAGTACAGATCAGTCCAGCCCCGCTCTCTCATAAGAGCAGCGCATAAACGTATGctcgcacactcacacacccaacACGCAGAGATACACACTCGcaggcacactcacacacacagacgcacacgcaGACAGGCACACCGAGCAGCCTAATCTACCAGCTCCAAGACGCAGCCAGAGCCAGCTAAAAGACACAGCCCCATAACAGCAGACCAGCATGGATGCACTGAAGAAAGGATTCTCAATTGCCAAGGAGGGCGTCGTGGCAGCAGCAGAGAAGACCAAGGCAGGGGTGGAGGAGGCAGCTGCCAAAACTAAGGAGGGAGTCATGTATGTGGggaacaagacaaaggaCGGGATGGTAGCAGGTGTGAACACAGTGGCCCAGAGAACGACTGACCAGGCCAATATTGTCGGGGACGCAACGGTCGCCGGGGCCAATGAGCTGTCTCAGCAAACAGTGGAGGGGTTGGAGAATGTGGCAGTGAACTCCGGATTGGTGAACCAGGAACAGGGACAGGAAGAAGCTGTAACTGAGGGTGACTTCTCACAGGGAGCTGAGCAGGCCGGACAgtaggagtgTTGGTCCTGACCTCAGTGATTAGCAGCGGTCTCCCTCGTCTTCTGATTTAGAAGAGCTGCTGCTTGTCCTGCGTATCCCATCGTCACCCAATGGGTCCTGGGGAACCTTACTGCCCCCAGCGTCTCCTCTCTGATGCTTTCTTTGTGTGAATCgatggaaacaacaacaaaaaatcaaaaAGATCCTCCCCAGCCAAAACAACCCTCAACCATAAACACTCTACACATTCCTACCCTAATGCCTTTACCGTCCATATACCTCATCCCCGACATTTACCCACCTTACCACTGTGACCATCCTCACCCACCATCCCCTGTGCCCACTCAAGATCACCttatcacacatacagtacacacacgcatatacacacacacgcatatacaccACAACGTTGAGAAAGACTTCTCagaacaatatatattttttctccccAAGAGTTTCGGAAATGTGAGACTTACTGGTAGTGTTCACGCTGTCAGCTAACGTAACACCTGTACTTATACTGTAGATGTACTTATATCAGTGTATGCTTTAGCCAGGTTTGTTGATTAATATGTGTTTGAAGCCTGTGTATATTTAACCCCTTGTGTCTTAATGCCTGAAATCCCCTTATTATGACAGATCGGGGTTCAGGGTCGGAGTGAAAGTGGAGTTATGGGTTAACAGTATCATATTGTCTGTTTTACTCCCCATATTCACATGACCGATCACGTTACCCAGTCTCACACCTTCAATGGGGCTGCAGTACATACAGGGAACTATGTATCTCATAAACAGATACTGTCTGGTGTTTCCAGCTGTCTTTCCACTCAAACCTGGGTCTGCAATTATAGCGTTATCAAAGAGAGAACGGTTACATGGGGGGTTTGCAATGGCCTTTATAATTTCACTAGTTGCAATGAAAGGCAATAAATAAGATCTGTTGAGGTGTTTTTGCATGTGATCAGATTAAAGATAAAGTGCCCAACAGATTCAGTATGTAGGCCTACCTCAGAAGTGGATGCAAGTAGTCGCCAGGTGAAATACCTTGAcatcagtggtggctggtgggaggcgttataggaggatgggctcattgtaatgactggaatggaatatATGGAACGGAGTCCAATGTGGTTTCATgtcattccatttattccattccagccattacaatgagcccatccttctATAgcgcctcccaccagcctccactgcttgaCATCCCATACATCTGGTCTCAGAGGAAACAAATCTCTCCACCCATTCGTCATGCTTTTACTGCTCAGTCATACAAGACACACCTCCTGTCACTCAACAATGTGCCCTGGCCCCTCCCCTGTGTCTGCTCTCCTGGCTAAAACAGGTCTTTTAAACCATTACAGTGTTTGCCCTTTGAAGCCATCTGAAACGAGACTGCATGTTGCCTTACTAACAACCAGACACATACTCAGACACATACTCAGACACACATTCATTGGTACTAAAAAACAACCTCACAAATTAAAATGCACATATCACACATTTATCCAAGAATTAGAGgtgacacacattcacacagacatGCAAATATATGTTGGTATCAAAGCAGACTCTTTTATAAACAGTACAACTGAactgaaataaaaatgtttaaatccaaaa
>XM_021609138.2
TCACTCAGCTGCTCTCCTTGTTGAGGGTGTTCCAATCTGCCTCAGCAGTACAGATCAGTCCAGCCCCGCTCTCTCATAAGAGCAGCGCATAAACGTATGctcgcacactcacacacccaacACGCAGAGATACACACTCGcaggcacactcacacacacagacgcacacgcaGACAGGCACACCGAGCAGCCTAATCTACCAGCTCCAAGACGCAGCCAGAGCCAGCTAAAAGACACAGCCCCATAACAGCAGACCAGCATGGATGCACTGAAGAAAGGATTCTCAATTGCCAAGGAGGGCGTCGTGGCAGCAGCAGAGAAGACCAAGGCAGGGGTGGAGGAGGCAGCTGCCAAAACTAAGGAGGGAGTCATGTATGTGGggaacaagacaaaggaCGGGATGGTAGCAGGTGTGAACACAGTGGCCCAGAGAACGACTGACCAGGCCAATATTGTCGGGGACGCAACGGTCGCCGGGGCCAATGAGCTGTCTCAGCAAACAGTGGAGGGGTTGGAGAATGTGGCAGTGAACTCCGGATTGGTGAACCAGGGTGACTTCTCACAGGGAGCTGAGCAGGCCGGACAgtaggagtgTTGGTCCTGACCTCAGTGATTAGCAGCGGTCTCCCTCGTCTTCTGATTTAGAAGAGCTGCTGCTTGTCCTGCGTATCCCATCGTCACCCAATGGGTCCTGGGGAACCTTACTGCCCCCAGCGTCTCCTCTCTGATGCTTTCTTTGTGTGAATCgatggaaacaacaacaaaaaatcaaaaAGATCCTCCCCAGCCAAAACAACCCTCAACCATAAACACTCTACACATTCCTACCCTAATGCCTTTACCGTCCATATACCTCATCCCCGACATTTACCCACCTTACCACTGTGACCATCCTCACCCACCATCCCCTGTGCCCACTCAAGATCACCttatcacacatacagtacacacacgcatatacacacacacgcatatacaccACAACGTTGAGAAAGACTTCTCagaacaatatatattttttctccccAAGAGTTTCGGAAATGTGAGACTTACTGGTAGTGTTCACGCTGTCAGCTAACGTAACACCTGTACTTATACTGTAGATGTACTTATATCAGTGTATGCTTTAGCCAGGTTTGTTGATTAATATGTGTTTGAAGCCTGTGTATATTTAACCCCTTGTGTCTTAATGCCTGAAATCCCCTTATTATGACAGATCGGGGTTCAGGGTCGGAGTGAAAGTGGAGTTATGGGTTAACAGTATCATATTGTCTGTTTTACTCCCCATATTCACATGACCGATCACGTTACCCAGTCTCACACCTTCAATGGGGCTGCAGTACATACAGGGAACTATGTATCTCATAAACAGATACTGTCTGGTGTTTCCAGCTGTCTTTCCACTCAAACCTGGGTCTGCAATTATAGCGTTATCAAAGAGAGAACGGTTACATGGGGGGTTTGCAATGGCCTTTATAATTTCACTAGTTGCAATGAAAGGCAATAAATAAGATCTGTTGAGGTGTTTTTGCATGTGATCAGATTAAAGATAAAGTGCCCAACAGATTCAGTATGTAGGCCTACCTCAGAAGTGGATGCAAGTAGTCGCCAGGTGAAATACCTTGAcatcagtggtggctggtgggaggcgttataggaggatgggctcattgtaatgactggaatggaatatATGGAACGGAGTCCAATGTGGTTTCATgtcattccatttattccattccagccattacaatgagcccatccttctATAgcgcctcccaccagcctccactgcttgaCATCCCATACATCTGGTCTCAGAGGAAACAAATCTCTCCACCCATTCGTCATGCTTTTACTGCTCAGTCATACAAGACACACCTCCTGTCACTCAACAATGTGCCCTGGCCCCTCCCCTGTGTCTGCTCTCCTGGCTAAAACAGGTCTTTTAAACCATTACAGTGTTTGCCCTTTGAAGCCATCTGAAACGAGACTGCATGTTGCCTTACTAACAACCAGACACATACTCAGACACATACTCAGACACACATTCATTGGTACTAAAAAACAACCTCACAAATTAAAATGCACATATCACACATTTATCCAAGAATTAGAGgtgacacacattcacacagacatGCAAATATATGTTGGTATCAAAGCAGACTCTTTTATAAACAGTACAACTGAactgaaataaaaatgtttaaatccaaaa
>TU83338
CAGTACAGATCAGTCCAGCCCCGCTCTCTCATAAGAGCAGCGCATAAACGTATGctcgcacactcacacacccaacACGCAGAGATACACACTCGcaggcacactcacacacacagacgcacacgcaGACAGGCACACCGAGCAGCCTAATCTACCAGCTCCAAGACGCAGCCAGAGCCAGCTAAAAGACACAGCCCCATAACAGCAGACCAGCATGGATGCACTGAAGAAAGGATTCTCAATTGCCAAGGAGGGCGTCGTGGCAGCAGCAGAGAAGACCAAGGCAGGGGTGGAGGAGGCAGCTGCCAAAACTAAGGAGGGAGTCATGTATGTGGggaacaagacaaaggaCGGGATGGTAGCAGGTGTGAACACAGTGGCCCAGAGAACGACTGACCAGGCCAATATTGTCGGGGACGCAACGGTCGCCGGGGCCAATGAGCTGTCTCAGCAAACAGTGGAGGGGTTGGAGAATGTGGCAGTGAACTCCGGATTGGTGAACCAGGGTGACTTCTCACAGGGAGCTGAGCAGGCCGGACAgtaggagtgTTGGTCCTGACCTCAGTGATTAGCAGCGGTCTCCCTCGTCTTCTGATTTAGAAGAGCTGCTGCTTGTCCTGCGTATCCCATCGTCACCCAATGGGTCCTGGGGAACCTTACTGCCCCCAGCGTCTCCTCTCTGATGCTTTCTTTGTGTGAATCgatggaaacaacaacaaaaaatcaaaaAGATCCTCCCCAGCCAAAACAACCCTCAACCATAAACACTCTACACATTCCTACCCTAATGCCTTTACCGTCCATATACCTCATCCCCGACATTTACCCACCTTACCACTGTGACCATCCTCACCCACCATCCCCTGTGCCCACTCAAGATCACCttatcacacatacagtacacacacgcatatacacacacacgcatatacaccACAACGTTGAGAAAGACTTCTCagaacaatatatattttttctccccAAGAGTTTCGGAAATGTGAGACTTACTGGTAGTGTTCACGCTGTCAGCTAACGTAACACCTGTACTTATACTGTAGATGTACTTATATCAGTGTATGCTTTAGCCAGGTTTGTTGATTAATATGTGTTTGAAGCCTGTGTATATTTAACCCCTTGTGTCTTAATGCCTGAAATCCCCTTATTATGACAGATCGGGGTTCAGGGTCGGAGTGAAAGTGGAGTTATGGGTTAACAGTATCATATTGTCTGTTTTACTCCCCATATTCACATGACCGATCACGTTACCCAGTCTCACACCTTCAATGGGGCTGCAGTACATACAGGGAACTATGTATCTCATAAACAGATACTGTCTGGTGTTTCCAGCTGTCTTTCCACTCAAACCTGGGTCTGCAATTATAGCGTTATCAAAGAGAGAACGGTTACATGGGGGGTTTGCAATGGCCTTTATAATTTCACTAGTTGCAATGAAAGGCAATAAATAAGATCTGTTGAGGTGTTTTTGCATGTGATCAGATTAAAGATAAAGTGCCCAACAGATTCAGTATGTAGGCCTACCTCAGAAGTGGATGCAAGTAGTCGCCAGGTGAAATACCTTGAcatcagtggtggctggtgggaggcgttataggaggatgggctcattgtaatgactggaatggaatatATGGAACGGAGTCCAATGTGGTTTCATgtcattccatttattccattccagccattacaatgagcccatccttctATAgcgcctcccaccagcctccactgcttgaCATCCCATACATCTGGTCTCAGAGGAAACAAATCTCTCCACCCATTCGTCATGCTTTTACTGCTCAGTCATACAAGACACACCTCCTGTCACTCAACAATGTGCCCTGGCCCCTCCCCTGTGTCTGCTCTCCTGGCTAAAACAGGTCTTTTAAACCATTACAGTGTTTGCCCTTTGAAGCCATCTGAAACGAGACTGCATGTTGCCTTACTAACAACCAGACACATACTCAGACACATACTCAGACACACATTCATTGGTACTAAAAAACAACCTCACAAATTAAAATGCACATATCACACATTTATCCAAGAATTAGAGgtgacacacattcacacagacatGCAAATATATGTTGGTATCAAAGCAGACTCTTTTATAAACAGTACAACTGAactgaaataaaaatgtttaaatccaaaatactttttttctgtttttattaTCTTTCACTGTGGCATAATAATTTCCTGAGACAATACCAAATTGAGGCAAACATACCTAGAC
>TU83339
CAGTACAGATCAGTCCAGCCCCGCTCTCTCATAAGAGCAGCGCATAAACGTATGctcgcacactcacacacccaacACGCAGAGATACACACTCGcaggcacactcacacacacagacgcacacgcaGACAGGCACACCGAGCAGCCTAATCTACCAGCTCCAAGACGCAGCCAGAGCCAGCTAAAAGACACAGCCCCATAACAGCAGACCAGCATGGATGCACTGAAGAAAGGATTCTCAATTGCCAAGGAGGGCGTCGTGGCAGCAGCAGAGAAGACCAAGGCAGGGGTGGAGGAGGCAGCTGCCAAAACTAAGGAGGGAGTCATGTATGTGGggaacaagacaaaggaCGGGATGGTAGCAGGTGTGAACACAGTGGCCCAGAGAACGACTGACCAGGCCAATATTGTCGGGGACGCAACGGTCGCCGGGGCCAATGAGCTGTCTCAGCAAACAGTGGAGGGGTTGGAGAATGTGGCAGTGAACTCCGGATTGGTGAACCAGGGTGACTTCTCACAGGGAGCTGAGCAGGCCGGACAgtaggagtgTTGGTCCTGACCTCAGTGATTAGCAGCGGTCTCCCTCGTCTTCTGATTTAGAAGAGCTGCTGCTTGTCCTGCGTATCCCATCGTCACCCAATGGGTCCTGGGGAACCTTACTGCCCCCAGCGTCTCCTCTCTGATGCTTTCTTTGTGTGAATCgatggaaacaacaacaaaaaatcaaaaAGATCCTCCCCAGCCAAAACAACCCTCAACCATAAACACTCTACACATTCCTACCCTAATGCCTTTACCGTCCATATACCTCATCCCCGACATTTACCCACCTTACCACTGTGACCATCCTCACCCACCATCCCCTGTGCCCACTCAAGATCACCttatcacacatacagtacacacacgcatatacacacacacgcatatacaccACAACGTTGAGAAAGACTTCTCagaacaatatatattttttctccccAAGAGTTTCGGAAATGTGAGACTTACTGGTAGTGTTCACGCTGTCAGCTAACGTAACACCTGTACTTATACTGTAGATGTACTTATATCAGTGTATGCTTTAGCCAGGTTTGTTGATTAATATGTGTTTGAAGCCTGTGTATATTTAACCCCTTGTGTCTTAATGCCTGAAATCCCCTTATTATGACAGATCGGGGTTCAGGGTCGGAGTGAAAGTGGAGTTATGGGTTAACAGTATCATATTGTCTGTTTTACTCCCCATATTCACATGACCGATCACGTTACCCAGTCTCACACCTTCAATGGGGCTGCAGTACATACAGGGAACTATGTATCTCATAAACAGATACTGTCTGGTGTTTCCAGCTGTCTTTCCACTCAAACCTGGGTCTGCAATTATAGCGTTATCAAAGAGAGAACGGTTACATGGGGGGTTTGCAATGGCCTTTATAATTTCACTAGTTGCAATGAAAGGCAATAAATAAGATCTGTTGAGGTGTTTTTGCATGTGATCAGATTAAAGATAAAGTGCCCAACAGATTCAGTATGTAGGCCTACCTCAGAAGTGGATGCAAGTAGTCGCCAGGTGAAATACCTTGAcaccagcctccactgcttgaCATCCCATACATCTGGTCTCAGAGGAAACAAATCTCTCCACCCATTCGTCATGCTTTTACTGCTCAGTCATACAAGACACACCTCCTGTCACTCAACAATGTGCCCTGGCCCCTCCCCTGTGTCTGCTCTCCTGGCTAAAACAGGTCTTTTAAACCATTACAGTGTTTGCCCTTTGAAGCCATCTGAAACGAGACTGCATGTTGCCTTACTAACAACCAGACACATACTCAGACACATACTCAGACACACATTCATTGGTACTAAAAAACAACCTCACAAATTAAAATGCACATATCACACATTTATCCAAGAATTAGAGgtgacacacattcacacagacatGCAAATATATGTTGGTATCAAAGCAGACTCTTTTATAAACAGTACAACTGAactgaaataaaaatgtttaaatccaaaatactttttttctgtttttattaTCTTTCACTGTGGCATAATAATTTCCTGAGACAATACCAAATTGAGGCAAACATACCTAGAC

Function

symbol description
sncg Predicted to enable cuprous ion binding activity. Predicted to be involved in several processes, including chemical synaptic transmission; regulation of neuron death; and synaptic vesicle endocytosis. Predicted to act upstream of or within adult locomotory behavior; regulation of dopamine secretion; and regulation of neurotransmitter secretion. Located in centrosome and cytoplasm. Implicated in Lewy body dementia. Biomarker of several diseases, including Lewy body dementia; neurodegenerative disease (multiple); pancreatic cancer; retinoblastoma; and vascular dementia.

NR:

description
gamma-synuclein isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609131.2 False 2251 mRNA 0.47 6 67669673 67681775
XM_021609138.2 False 2221 mRNA 0.47 5 67669673 67681775
TU83338 False 2260 TUCP 0.46 5 67669589 67681730
TU83339 True 2107 TUCP 0.46 6 67669589 67681730

Neighbor

gene id symbol gene type direction distance location
LOC110527672 NA coding downstream 27552 67638731 ~ 67642121 (-)
LOC110527634 nfkb2 coding downstream 75933 67575052 ~ 67593740 (-)
LOC118965291 NA coding downstream 152858 67515286 ~ 67516815 (-)
LOC118966711 LOC106606039 coding downstream 154456 67514760 ~ 67515221 (-)
ninl ninl coding downstream 170445 67446441 ~ 67499228 (-)
LOC110527713 bmpr1a coding upstream 44363 67726138 ~ 67793350 (-)
LOC118965293 ldb3 coding upstream 115180 67796955 ~ 67813744 (-)
LOC110527725 LOC106606152 coding upstream 132264 67814039 ~ 67856689 (-)
LOC110532592 opn4 coding upstream 191184 67872959 ~ 67899973 (-)
LOC110532597 NA coding upstream 267210 67897706 ~ 67953556 (-)
G75385 NA non-coding downstream 25709 67643690 ~ 67643964 (-)
G75384 NA non-coding downstream 26073 67643221 ~ 67643600 (-)
G75383 NA non-coding downstream 26998 67642459 ~ 67642675 (-)
G75360 NA non-coding downstream 78589 67590854 ~ 67591084 (-)
G75358 NA non-coding downstream 84567 67584397 ~ 67585106 (-)
G75413 NA non-coding upstream 41849 67723624 ~ 67725800 (-)
G75426 NA non-coding upstream 69692 67751467 ~ 67751829 (-)
G75539 NA non-coding upstream 303392 67985167 ~ 67992028 (-)
G75612 LOC106576702 non-coding upstream 457020 68138795 ~ 68142480 (-)
LOC110527584 LOC106576720 other downstream 281629 67386509 ~ 67389299 (-)
LOC110527436 ppp2r5d other downstream 659086 66965664 ~ 67010646 (-)
tjap1 tjap1 other downstream 846857 66806836 ~ 66883731 (-)
LOC110526867 LOC100136521 other downstream 3288317 64369803 ~ 64384521 (-)
G70013 NA other downstream 4391921 63277208 ~ 63277752 (-)
sdhaf4 LOC106576700 other upstream 476186 68157900 ~ 68162024 (-)
G75682 NA other upstream 528405 68210180 ~ 68211706 (-)
LOC110527951 coda1 other upstream 893818 68575379 ~ 68690343 (-)
LOC118965321 LOC106576963 other upstream 2401065 70082835 ~ 70088715 (-)
G78414 NA other upstream 2673141 70354916 ~ 70355591 (-)

Expression


Co-expression Network