LOC110527713 (bmpr1a)


Basic Information

Item Value
gene id LOC110527713
gene name bmpr1a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 67726138 ~ 67793350 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983393.1
ATGGTTGCGCACTCGCTGCAGTGATTGGAAGGTTTTGGTCTGGAATTATCTCTTCTCGCGCAGGACTGGGTATGTGCGCTTGATCAAATGACATAGTCGGAGCCTGAAACATAGCAAGGAGAGCTGGGCCGAGGTAAAAACAGAATTTTTGGAAAATATACACAACTTCAATACGAAATATATAGATATAAGGGAGTGATCGCCCGGAACCAAAAGGATTGGCCACATCTGCTGGAGAAAAAGGTCTCCATGGTGCCATGCTGGATTTCTGTCTCCACCATCAATATGTTCTCTCTCCCCATGGATCTGTATGACCCCCAGCACCAACTCTGGTCTCTCTACAAGCTTCCTCAACATGCCCCTGCACCATGGATCCCCCAGTGAGCTGGTCAGAATCCAGACCACATGCTCCACGGCACCGGGCACAAGCATGAGTCCAGGAAGCCCGGGGACGACACCACGGTGGCCCCAGAGGACGCCGCCCGCTTTCTGAGCTGCTACTGCTCGGGTTACTGTCCAGAGGACCACAAAAATAACACCTGCGAGACGAATGGCCAATGTTTTGCCATCATAGAGGAGGATGAGAACGGAGAAGCTATTCTGACCTCTGGCTGCATGAAGTATGAAGGCTCACATTTTCAATGCAAGGATTCGCCCAGGGCTCAGACCAGGCGAACGATTGAATGCTGCGGGACAGACTTCTGTAATCGGGACCTGCAGCCCACATTACCTCCCCCAATGGACACTGGTTCCTACTTTGGCAGTGCCCACTGGCTGGCGTTCCTTATATCAATGACCGTATGCTGCTGCACTCTCATCTGCAtcacagtagtctgttactacaGGTACAAGTGGCAGACGGAGCGGCAGCAGTACCACCGGGACCTGGAGCAGGACGAGGCCTTCATCCCTGTGGGAGAGTCTCTCAAAGACCTCATCAACCAGTGCCAGTCTTCTGGCAGTGGCTCTGGGCTCCCCCTGCTGGTGCAGCGCACCATTGCCAAGCAAATCCAGATGGTGCGTCAGATCGGCAAGGGGCGCTACGGCGAGGTGTGGCTGGGCCGCTGGCGGGGAGAGAAGGTGGCCGTCAAGGTGTTCTTCACCCGGGAGGAGGCCAGCTGGTTCAGAGAGACCGAGATCTACCAGACAGTCCTCATGAGGCACGAGAACATACTGGGTTTCATAGCGGCAGACATCAAGGGTACCGGGGCCTTCACCCAGCTCTTCCTCATCACAGACTACCACGAGAACGGCTCCCTGTACGACTACCTGAGGTTCACCACGCTGGACACCCAGAGCCTGCTGCGACTGGCCTACTCCGCCGCCTGCGGCCTGTGTCACCTCCACACGGAGATCTACGGCACCCAGGGCAAGCCGGCCATCGCCCACCGAGACCTGAAGAGCAAGAACATCCTGATGAAGAAGAACGGCACCTGCTGCATCGCTGACCTGGGCCTGGCCGTCAAGTTCAACAGTGATACCAACGAGGTAGACGTCCCTCTGAGTACACGGGTGGGGACCCGGAGGTACATGGCCCCAGAGGTGCTGGCCGAGACCCTGAACAAGAACCACTTCCAGGCCTACATCATGGCTGATATATATAGCTACGGCCTCGTCATCTGGGAGATTGCCCGCCGCTGTATAACAGGAGgtATAGTGGAGGATCATCAGCTGCCATACTATGAGATGGTGCCGTCAGACCCGTCCTTCGAGGACATGctggaggtggtgtgtgtgaaaGGGCTGCGGCCCACCGTGTCCAACAGGTGGAACGGTGACGAGtgTCTGAGAACCATGCTGAAGCTGATGTCTGAGTGCTGGGCCCACAACCCCGCCTCACGCCTCACCATCTTACGAGTCAAGAAGACCCTGGCCAAAATGGTGGAATCCCAGGACATCAAAATGTGATATTTTACCCCTACGTACTCAACACAGCCCGATCGAGAGCCCGAACTCCCCAGTGTGTCCCAATGTCATGATGCAGAATATGTCACCTCTGTTCAGGAGGCGGGGGAGGAGAAACagtggatggggggaggggggacccTGCCACAGGGCCTTGGACATTGAGCCTCAACCCTCATGAATCTCTATAACCACAATGGACAGACGCTGCTGCAGAGGTGTTTTTTGACTAAAGGAAACTGTATAGGTTCACTCTCCCGCCTATTCCCTCCCTGACCAGAGGAGTTCTGGGTTGTAGGAAGCAACGTCCTGCGATTTGACGCTTTCTGTGAAAGCCAAAACAGGACATGGTGTGAGGAGGGGGAAGGACATGTGTCTGCTCACATGTTGATGGACAAAGTCATATATTATGTAGGAACTTTAGAGCCACACTTCAAACCAAGACACTGCCCTCGCAATCGTCACCTCCCGCCAATCATGTTCAATTTTTGCCTGTAAATGTTTTATGccaatttttttcccccctcttcaGGACAGTCTTCTCCTGCCATATGGAAATATAACTCTTGACTCTTAAGTAGAGTAATTATGAAATAAGGTACTATAATTATGTGaatttaaatgtaaatgtatattgGATCGATAGATGCTGTGCCTACAAAAAAGAACCATACTGCAATGGTATTCACGTCCAGTGGGCTTCAAATGCGACCTGCTTCAAGAGCTACGAGCAATCCAGACAACCAAGGACATTGTAAGAGGGGATACTCGACTTGCCTTAAATCAACAACTCACTGTGCTTCCTATAACAAAGTTCAACTCAGTAACTTCTCCTGTCACATTTGACATGAAAAGGACAACTGGGGAGAAAAATATGTTCTGCATAATTCTATTCAGAAGGAAATGTGTAAATAGGAAGTCAATCTGTGTCCCGTCCTGTCGCTATGCTTACCCCTTCTTCGTATTTGTTCCTTTGTGTATATACGGTATGTCTTCTGGGAGGAATGTCCAGAACACTAAACATTGAGTCTTGTTCATAGATATTATAAGCTGAATTTCCCTCCAGCTCTTCTCTATTGCTTTTAATTCCATGTTGAGTTATAGATATTCTATGAGTGGCCAACTTTCATATTGCCAAACATCATGTGAGCTCGGCCATTGGACTG
>XM_021609172.2
AATGGTTGCGCACTCGCTGCAGTGATTGGAAGGTTTTGGTCTGGAATTATCTCTTCTCGCGCAGGACTGGGTATGTGCGCTTGATCAAATGACATAGTCGGAGCCTGAAACATAGCAAGGAGAGCTGGGCCGAGGTAAAAACAGAATTTTTGGAAAATATACACAACTTCAATACGAAATATATAGATATAAGGGAGTGATCGCCCGGAACCAAAAGGATTGGCCACATCTGCTGGAGAAAAAGGTCTCCATGGTGCCATGCTGGATTTCTGTCTCCACCATCAATATGTTCTCTCTCCCCATGGATCTGTATGACCCCCAGCACCAACTCTGGTCTCTCTACAAGCTTCCTCAACATGCCCCTGCACCATGGATCCCCCAGTGAGGGTTTCCAACCGAGGTAGCCTGTGAGAAGGAAGATTTTTGTTTTTGTGCCATCTTACCCATCCTCCCTCACCCACTTGCCTCACCCTCCCTGTACATATTCACCCGTACCTCCACTCCCCCAACGGGGGAAAACTATGCTTCTGCTCTCCCTGCGCTGAACCAGGAAGGGACAGGACGAGGCACACCATCAGAGCCCACAGGGGTGACCACCAGTGACCAACAAGCTCCCACAGAGCGCAGTCCAGCCCACTCAGCAAGTCACTGTGCCAAGATGACAGTGCTTCCCTTTTTCAATGCTGCGGTGGGAGTCTGGATCCTACTGGTGATCAGAGCTGAAGGTATTCAAACTGGTCAGAATCCAGACCACATGCTCCACGGCACCGGGCACAAGCATGAGTCCAGGAAGCCCGGGGACGACACCACGGTGGCCCCAGAGGACGCCGCCCGCTTTCTGAGCTGCTACTGCTCGGGTTACTGTCCAGAGGACCACAAAAATAACACCTGCGAGACGAATGGCCAATGTTTTGCCATCATAGAGGAGGATGAGAACGGAGAAGCTATTCTGACCTCTGGCTGCATGAAGTATGAAGGCTCACATTTTCAATGCAAGGATTCGCCCAGGGCTCAGACCAGGCGAACGATTGAATGCTGCGGGACAGACTTCTGTAATCGGGACCTGCAGCCCACATTACCTCCCCCAATGGACACTGGTTCCTACTTTGGCAGTGCCCACTGGCTGGCGTTCCTTATATCAATGACCGTATGCTGCTGCACTCTCATCTGCAtcacagtagtctgttactacaGGTACAAGTGGCAGACGGAGCGGCAGCAGTACCACCGGGACCTGGAGCAGGACGAGGCCTTCATCCCTGTGGGAGAGTCTCTCAAAGACCTCATCAACCAGTGCCAGTCTTCTGGCAGTGGCTCTGGGCTCCCCCTGCTGGTGCAGCGCACCATTGCCAAGCAAATCCAGATGGTGCGTCAGATCGGCAAGGGGCGCTACGGCGAGGTGTGGCTGGGCCGCTGGCGGGGAGAGAAGGTGGCCGTCAAGGTGTTCTTCACCCGGGAGGAGGCCAGCTGGTTCAGAGAGACCGAGATCTACCAGACAGTCCTCATGAGGCACGAGAACATACTGGGTTTCATAGCGGCAGACATCAAGGGTACCGGGGCCTTCACCCAGCTCTTCCTCATCACAGACTACCACGAGAACGGCTCCCTGTACGACTACCTGAGGTTCACCACGCTGGACACCCAGAGCCTGCTGCGACTGGCCTACTCCGCCGCCTGCGGCCTGTGTCACCTCCACACGGAGATCTACGGCACCCAGGGCAAGCCGGCCATCGCCCACCGAGACCTGAAGAGCAAGAACATCCTGATGAAGAAGAACGGCACCTGCTGCATCGCTGACCTGGGCCTGGCCGTCAAGTTCAACAGTGATACCAACGAGGTAGACGTCCCTCTGAGTACACGGGTGGGGACCCGGAGGTACATGGCCCCAGAGGTGCTGGCCGAGACCCTGAACAAGAACCACTTCCAGGCCTACATCATGGCTGATATATATAGCTACGGCCTCGTCATCTGGGAGATTGCCCGCCGCTGTATAACAGGAGgtATAGTGGAGGATCATCAGCTGCCATACTATGAGATGGTGCCGTCAGACCCGTCCTTCGAGGACATGctggaggtggtgtgtgtgaaaGGGCTGCGGCCCACCGTGTCCAACAGGTGGAACGGTGACGAGtgTCTGAGAACCATGCTGAAGCTGATGTCTGAGTGCTGGGCCCACAACCCCGCCTCACGCCTCACCATCTTACGAGTCAAGAAGACCCTGGCCAAAATGGTGGAATCCCAGGACATCAAAATGTGATATTTTACCCCTACGTACTCAACACAGCCCGATCGAGAGCCCGAACTCCCCAGTGTGTCCCAATGTCATGATGCAGAATATGTCACCTCTGTTCAGGAGGCGGGGGAGGAGAAACagtggatggggggaggggggacccTGCCACAGGGCCTTGGACATTGAGCCTCAACCCTCATGAATCTCTATAACCACAATGGACAGACGCTGCTGCAGAGGTGTTTTTTGACTAAAGGAAACTGTATAGGTTCACTCTCCCGCCTATTCCCTCCCTGACCAGAGGAGTTCTGGGTTGTAGGAAGCAACGTCCTGCGATTTGACGCTTTCTGTGAAAGCCAAAACAGGACATGGTGTGAGGAGGGGGAAGGACATGTGTCTGCTCACATGTTGATGGACAAAGTCATATATTATGTAGGAACTTTAGAGCCACACTTCAAACCAAGACACTGCCCTCGCAATCGTCACCTCCCGCCAATCATGTTCAATTTTTGCCTGTAAATGTTTTATGccaatttttttcccccctcttcaGGACAGTCTTCTCCTGCCATATGGAAATATAACTCTTGACTCTTAAGTAGAGTAATTATGAAATAAGGTACTATAATTATGTGaatttaaatgtaaatgtatattgGATCGATAGATGCTGTGCCTACAAAAAAGAACCATACTGCAATGGTATTCACGTCCAGTGGGCTTCAAATGCGACCTGCTTCAAGAGCTACGAGCAATCCAGACAACCAAGGACATTGTAAGAGGGGATACTCGACTTGCCTTAAATCAACAACTCACTGTGCTTCCTATAACAAAGTTCAACTCAGTAACTTCTCCTGTCACATTTGACATGAAAAGGACAACTGGGGAGAAAAATATGTTCTGCATAATTCTATTCAGAAGGAAATGTGTAAATAGGAAGTCAATCTGTGTCCCGTCCTGTCGCTATGCTTACCCCTTCTTCGTATTTGTTCCTTTGTGTATATACGGTATGTCTTCTGGGAGGAATGTCCAGAACACTAAACATTGAGTCTTGTTCATAGATATTATAAGCTGAATTTCCCTCCAGCTCTTCTCTATTGCTTTTAATTCCATGTTGAGTTATAGATATTCTATGAGTGGCCAACTTTCATATTGCCAAACATCATGTGAGCTCGGCCATTGGACTG
>XM_021609179.2
AATGGTTGCGCACTCGCTGCAGTGATTGGAAGGTTTTGGTCTGGAATTATCTCTTCTCGCGCAGGACTGGGTATGTGCGCTTGATCAAATGACATAGTCGGAGCCTGAAACATAGCAAGGAGAGCTGGGCCGAGGTAAAAACAGAATTTTTGGAAAATATACACAACTTCAATACGAAATATATAGATATAAGGGAGTGATCGCCCGGAACCAAAAGGATTGGCCACATCTGCTGGAGAAAAAGGTCTCCATGGTGCCATGCTGGATTTCTGTCTCCACCATCAATATGTTCTCTCTCCCCATGGATCTGTATGACCCCCAGCACCAACTCTGGTCTCTCTACAAGCTTCCTCAACATGCCCCTGCACCATGGATCCCCCAGTGAGGGTTTCCAACCGAGGTAGCCTGTGAGAAGGAAGATTTTTGTTTTTGTGCCATCTTACCCATCCTCCCTCACCCACTTGCCTCACCCTCCCTGTACATATTCACCCGTACCTCCACTCCCCCAACGGGGGAAAACTATGCTTCTGCTCTCCCTGCGCTGAACCAGGAAGGGACAGGACGAGGCACACCATCAGAGCCCACAGGGGTGACCACCAGTGACCAACAAGCTCCCACAGAGCGCAGTCCAGCCCACTCAGCAAGTCACTGTGCCAAGATGACAGTGCTTCCCTTTTTCAATGCTGCGGTGGGAGTCTGGATCCTACTGGTGATCAGAGCTGAAGCTGGTCAGAATCCAGACCACATGCTCCACGGCACCGGGCACAAGCATGAGTCCAGGAAGCCCGGGGACGACACCACGGTGGCCCCAGAGGACGCCGCCCGCTTTCTGAGCTGCTACTGCTCGGGTTACTGTCCAGAGGACCACAAAAATAACACCTGCGAGACGAATGGCCAATGTTTTGCCATCATAGAGGAGGATGAGAACGGAGAAGCTATTCTGACCTCTGGCTGCATGAAGTATGAAGGCTCACATTTTCAATGCAAGGATTCGCCCAGGGCTCAGACCAGGCGAACGATTGAATGCTGCGGGACAGACTTCTGTAATCGGGACCTGCAGCCCACATTACCTCCCCCAATGGACACTGGTTCCTACTTTGGCAGTGCCCACTGGCTGGCGTTCCTTATATCAATGACCGTATGCTGCTGCACTCTCATCTGCAtcacagtagtctgttactacaGGTACAAGTGGCAGACGGAGCGGCAGCAGTACCACCGGGACCTGGAGCAGGACGAGGCCTTCATCCCTGTGGGAGAGTCTCTCAAAGACCTCATCAACCAGTGCCAGTCTTCTGGCAGTGGCTCTGGGCTCCCCCTGCTGGTGCAGCGCACCATTGCCAAGCAAATCCAGATGGTGCGTCAGATCGGCAAGGGGCGCTACGGCGAGGTGTGGCTGGGCCGCTGGCGGGGAGAGAAGGTGGCCGTCAAGGTGTTCTTCACCCGGGAGGAGGCCAGCTGGTTCAGAGAGACCGAGATCTACCAGACAGTCCTCATGAGGCACGAGAACATACTGGGTTTCATAGCGGCAGACATCAAGGGTACCGGGGCCTTCACCCAGCTCTTCCTCATCACAGACTACCACGAGAACGGCTCCCTGTACGACTACCTGAGGTTCACCACGCTGGACACCCAGAGCCTGCTGCGACTGGCCTACTCCGCCGCCTGCGGCCTGTGTCACCTCCACACGGAGATCTACGGCACCCAGGGCAAGCCGGCCATCGCCCACCGAGACCTGAAGAGCAAGAACATCCTGATGAAGAAGAACGGCACCTGCTGCATCGCTGACCTGGGCCTGGCCGTCAAGTTCAACAGTGATACCAACGAGGTAGACGTCCCTCTGAGTACACGGGTGGGGACCCGGAGGTACATGGCCCCAGAGGTGCTGGCCGAGACCCTGAACAAGAACCACTTCCAGGCCTACATCATGGCTGATATATATAGCTACGGCCTCGTCATCTGGGAGATTGCCCGCCGCTGTATAACAGGAGgtATAGTGGAGGATCATCAGCTGCCATACTATGAGATGGTGCCGTCAGACCCGTCCTTCGAGGACATGctggaggtggtgtgtgtgaaaGGGCTGCGGCCCACCGTGTCCAACAGGTGGAACGGTGACGAGtgTCTGAGAACCATGCTGAAGCTGATGTCTGAGTGCTGGGCCCACAACCCCGCCTCACGCCTCACCATCTTACGAGTCAAGAAGACCCTGGCCAAAATGGTGGAATCCCAGGACATCAAAATGTGATATTTTACCCCTACGTACTCAACACAGCCCGATCGAGAGCCCGAACTCCCCAGTGTGTCCCAATGTCATGATGCAGAATATGTCACCTCTGTTCAGGAGGCGGGGGAGGAGAAACagtggatggggggaggggggacccTGCCACAGGGCCTTGGACATTGAGCCTCAACCCTCATGAATCTCTATAACCACAATGGACAGACGCTGCTGCAGAGGTGTTTTTTGACTAAAGGAAACTGTATAGGTTCACTCTCCCGCCTATTCCCTCCCTGACCAGAGGAGTTCTGGGTTGTAGGAAGCAACGTCCTGCGATTTGACGCTTTCTGTGAAAGCCAAAACAGGACATGGTGTGAGGAGGGGGAAGGACATGTGTCTGCTCACATGTTGATGGACAAAGTCATATATTATGTAGGAACTTTAGAGCCACACTTCAAACCAAGACACTGCCCTCGCAATCGTCACCTCCCGCCAATCATGTTCAATTTTTGCCTGTAAATGTTTTATGccaatttttttcccccctcttcaGGACAGTCTTCTCCTGCCATATGGAAATATAACTCTTGACTCTTAAGTAGAGTAATTATGAAATAAGGTACTATAATTATGTGaatttaaatgtaaatgtatattgGATCGATAGATGCTGTGCCTACAAAAAAGAACCATACTGCAATGGTATTCACGTCCAGTGGGCTTCAAATGCGACCTGCTTCAAGAGCTACGAGCAATCCAGACAACCAAGGACATTGTAAGAGGGGATACTCGACTTGCCTTAAATCAACAACTCACTGTGCTTCCTATAACAAAGTTCAACTCAGTAACTTCTCCTGTCACATTTGACATGAAAAGGACAACTGGGGAGAAAAATATGTTCTGCATAATTCTATTCAGAAGGAAATGTGTAAATAGGAAGTCAATCTGTGTCCCGTCCTGTCGCTATGCTTACCCCTTCTTCGTATTTGTTCCTTTGTGTATATACGGTATGTCTTCTGGGAGGAATGTCCAGAACACTAAACATTGAGTCTTGTTCATAGATATTATAAGCTGAATTTCCCTCCAGCTCTTCTCTATTGCTTTTAATTCCATGTTGAGTTATAGATATTCTATGAGTGGCCAACTTTCATATTGCCAAACATCATGTGAGCTCGGCCATTGGACTG

Function

symbol description
bmpr1a Enables several functions, including ATP binding activity; SMAD binding activity; and protein homodimerization activity. Involved in several processes, including positive regulation of osteoblast differentiation; positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway; and positive regulation of vascular associated smooth muscle cell proliferation. Located in external side of plasma membrane. Colocalizes with caveola. Implicated in hereditary mixed polyposis syndrome 2; intestinal disease; and juvenile polyposis syndrome. Biomarker of pulmonary hypertension.

NR:

description
bone morphogenetic protein receptor type-1A isoform X2

GO: NA

KEGG:

id description
K04673 BMPR1A, ALK3, CD292; bone morphogenetic protein receptor type-1A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983393.1 False 3071 mRNA 0.51 12 67726138 67793349
XM_021609172.2 False 3420 mRNA 0.52 13 67726138 67793350
XM_021609179.2 True 3411 mRNA 0.52 13 67726138 67793350

Neighbor

gene id symbol gene type direction distance location
LOC110527687 sncg coding downstream 44363 67669589 ~ 67681775 (-)
LOC110527672 NA coding downstream 84017 67638731 ~ 67642121 (-)
LOC110527634 nfkb2 coding downstream 132398 67575052 ~ 67593740 (-)
LOC118965291 NA coding downstream 209323 67515286 ~ 67516815 (-)
LOC118966711 LOC106606039 coding downstream 210921 67514760 ~ 67515221 (-)
LOC118965293 ldb3 coding upstream 3605 67796955 ~ 67813744 (-)
LOC110527725 LOC106606152 coding upstream 20689 67814039 ~ 67856689 (-)
LOC110532592 opn4 coding upstream 79609 67872959 ~ 67899973 (-)
LOC110532597 NA coding upstream 155635 67897706 ~ 67953556 (-)
LOC110527734 LOC106576704 coding upstream 168418 67961768 ~ 68077805 (-)
G75413 NA non-coding downstream 338 67723624 ~ 67725800 (-)
G75385 NA non-coding downstream 82174 67643690 ~ 67643964 (-)
G75384 NA non-coding downstream 82538 67643221 ~ 67643600 (-)
G75383 NA non-coding downstream 83463 67642459 ~ 67642675 (-)
G75360 NA non-coding downstream 135054 67590854 ~ 67591084 (-)
G75539 NA non-coding upstream 191817 67985167 ~ 67992028 (-)
G75612 LOC106576702 non-coding upstream 345445 68138795 ~ 68142480 (-)
G75664 NA non-coding upstream 412494 68205844 ~ 68206060 (-)
G75665 NA non-coding upstream 413466 68206816 ~ 68207132 (-)
LOC110527584 LOC106576720 other downstream 338094 67386509 ~ 67389299 (-)
LOC110527436 ppp2r5d other downstream 715551 66965664 ~ 67010646 (-)
tjap1 tjap1 other downstream 903322 66806836 ~ 66883731 (-)
LOC110526867 LOC100136521 other downstream 3344782 64369803 ~ 64384521 (-)
sdhaf4 LOC106576700 other upstream 364611 68157900 ~ 68162024 (-)
G75682 NA other upstream 416830 68210180 ~ 68211706 (-)
LOC110527951 coda1 other upstream 782243 68575379 ~ 68690343 (-)
LOC118965321 LOC106576963 other upstream 2289490 70082835 ~ 70088715 (-)
G78414 NA other upstream 2561566 70354916 ~ 70355591 (-)

Expression


Co-expression Network