LOC110527725 (LOC106606152)


Basic Information

Item Value
gene id LOC110527725
gene name LOC106606152
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 67814039 ~ 67856689 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983425.1
tgtcattaTTTAAAAAGGGTTAGGCGTGAATTACATATTTGTCTGTGGCTGAACTGGAGGCTACTTGGCTCCTGCCCCACCCCCTCTACCTCCATTTTTGGACACCACTTTGCAGGAAGATTAAACCACACAAGCAATCAAAGCCTTTGGAAGAATGAGTAGCTACAATATTTCTCTGAGTGGGCCGGCCCCATGGGGCTTCCGATTGCAGGGAGGCAAGGACTTCAACATGCCCCTGACCATCTCCAGGATCACCCCAGGGAGTAAGGCACAGCAGGGAAACCTGATCCAGGGTGACATCATCGTGGCCATCGACGGGGTCAGCACTGAAGGCATGACCCACCTAGAGGCCCAGAACAAGATCAAGTCTGCCAGCTTCAACCTGGCCCTCACCATGCAGAaGTCAAAGCGCCCATTTCCACTTTCCACATCCACCCAAAGAATGGATTCTCCCATGCAACAGATCCCTCACCAGAAGGTTATTTCCAACACTCCTGCCAACAACGAGTATGTGCCCAGCTTCAACCCCATTGCGCTGAAGGACACTGCCCTGTCCACCCACAAGCCCATCGAGGTGAAGGGTCCTGGGGGCAAGGCCACCATAATCCATGCCCAGTACAACACCCCCATTAGCATGTACTCCCAGGACGCCATCATGGACGCCATCGCCGGACAGTCCAAGGGCCACGAGGCCGGAGAGGAAGTCCCAGCCGGCTCCCCCTTGGCTTCGCTCCCAGTAAAAGATGCTCAGGTAGACAGTGCCTCCCCAGTTTATCAGGCTGTGATCAAGACTGCAGACAGGGACACGGAGTTGAATGACTGGGCCCGCAGCTCCTCCCAGGTGCAGTCCAAGTCCTTCCGCCTCCTCGCCCACATCACGGGAACGGAGTTCATGCAAGACCCAGATGTGGAACATCTGAGGAAATCAAGGGAAAAGTTTGACACGGAATTTAAAGGTCCACGTTTTGCCAAATTGAAAAATTGGCACAATGGCCTGTCTGCTCAAATCCTAAACCTGCCAGAAAAAGCCGTGGTTTAAAATATGTGTCAGACCGAACGTAACTGTAGCAACCAGAGAAGTGCAGAGCAGGTAAAACAGTTGGACTGTGAGTGAGGAGAAGGTCAGGCTAAAGATACTGGAATGTGAGTTCGTGGAAAGAGGGTTGTTCAATACTTGTTGATCACATGTTGTAGTGAAGATTTTAGCCCAATGTCATATTCCCTCCTTATTTTGGCTATTTAAGTTGATGCTAGCTTTCTAAAGTAATTGCAGCTGTATAAGAAAGTTGTATTGTATTTCAACCGTAAATTATCACTATTTGAGTTTGACATTGTGATAAGTATGAATAAAAACAATGCcactaaataaaa
>XM_036983422.1
CTTCCTCTGGCTCTCtactctcttctgtctctctttctgtcattaTTTAAAAAGGGTTAGGCGTGAATTACATATTTGTCTGTGGCTGAACTGGGTTGGTTTTTAATTTGCTGTGCTCCCAGTCTCATTTGACATTTCGGGGAGATATTGTATCTTTTTTTTTGTCCTCACCtgtacttttctttttttttgcaccTTTTTTTCTGCTTTCAGAGGCTACTTGGCTCCTGCCCCACCCCCTCTACCTCCATTTTTGGACACCACTTTGCAGGAAGATTAAACCACACAAGCAATCAAAGCCTTTGGAAGAATGAGTAGCTACAATATTTCTCTGAGTGGGCCGGCCCCATGGGGCTTCCGATTGCAGGGAGGCAAGGACTTCAACATGCCCCTGACCATCTCCAGGATCACCCCAGGGAGTAAGGCACAGCAGGGAAACCTGATCCAGGGTGACATCATCGTGGCCATCGACGGGGTCAGCACTGAAGGCATGACCCACCTAGAGGCCCAGAACAAGATCAAGTCTGCCAGCTTCAACCTGGCCCTCACCATGCAGAaGTCAAAGCGCCCATTTCCACTTTCCACATCCACCCAAAGAATGGATTCTCCCATGCAACAGATCCCTCACCAGAAGGTTATTTCCAACACTCCTGCCAACAACGAGTATGTGCCCAGCTTCAACCCCATTGCGCTGAAGGACACTGCCCTGTCCACCCACAAGCCCATCGAGGTGAAGGGTCCTGGGGGCAAGGCCACCATAATCCATGCCCAGTACAACACCCCCATTAGCATGTACTCCCAGGACGCCATCATGGACGCCATCGCCGGACAGTCCAAGGGCCACGAGGCCGGAGAGGAAGTCCCAGCCGGCTCCCCCTTGGCTTCGCTCCCAGTAAAAGATGCTCAGGTAGACAGTGCCTCCCCAGTTTATCAGGCTGTGATCAAGACTGCAGACAGGGACACGGAGTTGAATGACTGGGCCCGCAGCTCCTCCCAGGTGCAGTCCAAGTCCTTCCGCCTCCTCGCCCACATCACGGGAACGGAGTTCATGCAAGACCCAGATGTGGAACATCTGAGGAAATCAAGGGAAAAGTTTGACACGGAATTTAAAGGTCCACGTTTTGCCAAATTGAAAAATTGGCACAATGGCCTGTCTGCTCAAATCCTAAACCTGCCAGAAAAAGCCGTGGTTTAAAATATGTGTCAGACCGAACGTAACTGTAGCAACCAGAGAAGTGCAGAGCAGGTAAAACAGTTGGACTGTGAGTGAGGAGAAGGTCAGGCTAAAGATACTGGAATGTGAGTTCGTGGAAAGAGGGTTGTTCAATACTTGTTGATCACATGTTGTAGTGAAGATTTTAGCCCAATGTCATATTCCCTCCTTATTTTGGCTATTTAAGTTGATGCTAGCTTTCTAAAGTAATTGCAGCTGTATAAGAAAGTTGTATTGTATTTCAACCGTAAATTATCACTATTTGAGTTTGACATTGTGATAAGTATGAATAAAAACAATGCcactaaataaaa
>XM_036983428.1
TCTTCCTCTGGCTCTCtactctcttctgtctctctttctgtcattaTTTAAAAAGGGTTAGGCGTGAATTACATATTTGTCTGTGGCTGAACTGGGTTGGTTTTTAATTTGCTGTGCTCCCAGTCTCATTTGACATTTCGGGGAGATATTGTATCTTTTTTTTTGTCCTCACCtgtacttttctttttttttgcaccTTTTTTTCTGCTTTCAGAGGCTACTTGGCTCCTGCCCCACCCCCTCTACCTCCATTTTTGGACACCACTTTGCAGGAAGATTAAACCACACAAGCAATCAAAGCCTTTGGAAGAATGAGTAGCTACAATATTTCTCTGAGTGGGCCGGCCCCATGGGGCTTCCGATTGCAGGGAGGCAAGGACTTCAACATGCCCCTGACCATCTCCAGGATCACCCCAGGGAGTAAGGCACAGCAGGGAAACCTGATCCAGGGTGACATCATCGTGGCCATCGACGGGGTCAGCACTGAAGGCATGACCCACCTAGAGGCCCAGAACAAGATCAAGTCTGCCAGCTTCAACCTGGCCCTCACCATGCAGAaGTCAAAGCGCCCATTTCCACTTTCCACATCCACCCAAAGAATGGATTCTCCCATGCAACAGATCCCTCACCAGAAGGTTATTTCCAACACTCCTGCCAACAACGAGTATGTGCCCAGCTTCAACCCCATTGCGCTGAAGGACACTGCCCTGTCCACCCACAAGCCCATCGAGGTGAAGGGTCCTGGGGGCAAGGCCACCATAATCCATGCCCAGTACAACACCCCCATTAGCATGTACTCCCAGGACGCCATCATGGACGCCATCGCCGGACAGTCCAAGGGCCACGAGGCCGGTTCGCTCCCAGTAAAAGATGCTCAGGTAGACAGTGCCTCCCCAGTTTATCAGGCTGTGATCAAGACTGCAGACAGGGACACGGAGTTGAATGACTGGGCCCGCAGCTCCTCCCAGGTGCAGTCCAAGTCCTTCCGCCTCCTCGCCCACATCACGGGAACGGAGTTCATGCAAGACCCAGATGTGGAACATCTGAGGAAATCAAGGGAAAAGTTTGACACGGAATTTAAAGGTCCACGTTTTGCCAAATTGAAAAATTGGCACAATGGCCTGTCTGCTCAAATCCTAAACCTGCCAGAAAAAGCCGTGGTTTAAAATATGTGTCAGACCGAACGTAACTGTAGCAACCAGAGAAGTGCAGAGCAGGTAAAACAGTTGGACTGTGAGTGAGGAGAAGGTCAGGCTAAAGATACTGGAATGTGAGTTCGTGGAAAGAGGGTTGTTCAATACTTGTTGATCACATGTTGTAGTGAAGATTTTAGCCCAATGTCATATTCCCTCCTTATTTTGGCTATTTAAGTTGATGCTAGCTTTCTAAAGTAATTGCAGCTGTATAAGAAAGTTGTATTGTATTTCAACCGTAAATTATCACTATTTGAGTTTGACATTGTGATAAGTATGAATAAAAACAATGCcactaaataaaa
>XM_036983420.1
AAGACCTCTCTTCCTCTGGCTCTCtactctcttctgtctctctttctgtcattaTTTAAAAAGGGTTAGGCGTGAATTACATATTTGTCTGTGGCTGAACTGGGTTGGTTTTTAATTTGCTGTGCTCCCAGTCTCATTTGACATTTCGGGGAGATATTGTATCTTTTTTTTTGTCCTCACCtgtacttttctttttttttgcaccTTTTTTTCTGCTTTCAGAGGCTACTTGGCTCCTGCCCCACCCCCTCTACCTCCATTTTTGGACACCACTTTGCAGGAAGATTAAACCACACAAGCAATCAAAGCCTTTGGAAGAATGAGTAGCTACAATATTTCTCTGAGTGGGCCGGCCCCATGGGGCTTCCGATTGCAGGGAGGCAAGGACTTCAACATGCCCCTGACCATCTCCAGGATCACCCCAGGGAGTAAGGCACAGCAGGGAAACCTGATCCAGGGTGACATCATCGTGGCCATCGACGGGGTCAGCACTGAAGGCATGACCCACCTAGAGGCCCAGAACAAGATCAAGTCTGCCAGCTTCAACCTGGCCCTCACCATGCAGAaGTCAAAGCGCCCATTTCCACTTTCCACATCCACCCAAAGAATGGATTCTCCCATGCAACAGATCCCTCACCAGAAGGCTCAAACTACCAAAATAAATGGCGGCCTCTCGGCCTGCAATACCTCCTCCGTGTCACTAGAGGCGTCTGGCGAGAAAAACTCCTACTCGGGGTCGCCCACCAAGAGGCAAACTCCAAGCCCTGGGGGCAAGACGACCCCCACAAAGAAGgcacagtataacactcctattGGGCTGTACTCAGCTGAGACCCTGCAAGAGATGGCTCAGCTCCAGGAGAGCCACAGAGGAAAGGGCTCTGCAGCAGGCCTCTCAGTGGGTTCGCTCCCAGTAAAAGATGCTCAGGTAGACAGTGCCTCCCCAGTTTATCAGGCTGTGATCAAGACTGCAGACAGGGACACGGAGTTGAATGACTGGGCCCGCAGCTCCTCCCAGGTGCAGTCCAAGTCCTTCCGCCTCCTCGCCCACATCACGGGAACGGAGTTCATGCAAGACCCAGATGTGGAACATCTGAGGAAATCAAGGGAAAAGTTTGACACGGAATTTAAAGGTCCACGTTTTGCCAAATTGAAAAATTGGCACAATGGCCTGTCTGCTCAAATCCTAAACCTGCCAGAAAAAGCCGTGGTTTAAAATATGTGTCAGACCGAACGTAACTGTAGCAACCAGAGAAGTGCAGAGCAGGTAAAACAGTTGGACTGTGAGTGAGGAGAAGGTCAGGCTAAAGATACTGGAATGTGAGTTCGTGGAAAGAGGGTTGTTCAATACTTGTTGATCACATGTTGTAGTGAAGATTTTAGCCCAATGTCATATTCCCTCCTTATTTTGGCTATTTAAGTTGATGCTAGCTTTCTAAAGTAATTGCAGCTGTATAAGAAAGTTGTATTGTATTTCAACCGTAAATTATCACTATTTGAGTTTGACATTGTGATAAGTATGAATAAAAACAATGCcactaaataaaa

Function

NR:

description
PREDICTED: LIM domain-binding protein 3-like isoform X1

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0001756 somitogenesis biological_process
GO:0046872 metal ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983425.1 False 1371 mRNA 0.49 10 67814039 67856643
XM_036983422.1 False 1527 mRNA 0.48 9 67814039 67856680
XM_036983428.1 False 1498 mRNA 0.48 8 67814039 67856681
XM_036983420.1 True 1548 mRNA 0.48 7 67814039 67856689

Neighbor

gene id symbol gene type direction distance location
LOC118965293 ldb3 coding downstream 295 67796955 ~ 67813744 (-)
LOC110527713 bmpr1a coding downstream 20689 67726138 ~ 67793350 (-)
LOC110527687 sncg coding downstream 132264 67669589 ~ 67681775 (-)
LOC110527672 NA coding downstream 171918 67638731 ~ 67642121 (-)
LOC110527634 nfkb2 coding downstream 220299 67575052 ~ 67593740 (-)
LOC110532592 opn4 coding upstream 16270 67872959 ~ 67899973 (-)
LOC110532597 NA coding upstream 92296 67897706 ~ 67953556 (-)
LOC110527734 LOC106576704 coding upstream 105079 67961768 ~ 68077805 (-)
LOC110527765 LOC100194528 coding upstream 221461 68078150 ~ 68086116 (-)
LOC110527775 LOC106576703 coding upstream 247439 68104128 ~ 68117689 (-)
G75426 NA non-coding downstream 62210 67751467 ~ 67751829 (-)
G75413 NA non-coding downstream 88239 67723624 ~ 67725800 (-)
G75385 NA non-coding downstream 170075 67643690 ~ 67643964 (-)
G75384 NA non-coding downstream 170439 67643221 ~ 67643600 (-)
G75383 NA non-coding downstream 171364 67642459 ~ 67642675 (-)
G75539 NA non-coding upstream 128478 67985167 ~ 67992028 (-)
G75612 LOC106576702 non-coding upstream 282106 68138795 ~ 68142480 (-)
G75664 NA non-coding upstream 349155 68205844 ~ 68206060 (-)
G75665 NA non-coding upstream 350127 68206816 ~ 68207132 (-)
LOC110527584 LOC106576720 other downstream 425995 67386509 ~ 67389299 (-)
LOC110527436 ppp2r5d other downstream 803452 66965664 ~ 67010646 (-)
tjap1 tjap1 other downstream 991223 66806836 ~ 66883731 (-)
LOC110526867 LOC100136521 other downstream 3432683 64369803 ~ 64384521 (-)
sdhaf4 LOC106576700 other upstream 301272 68157900 ~ 68162024 (-)
G75682 NA other upstream 353491 68210180 ~ 68211706 (-)
LOC110527951 coda1 other upstream 718904 68575379 ~ 68690343 (-)
LOC118965321 LOC106576963 other upstream 2226151 70082835 ~ 70088715 (-)
G78414 NA other upstream 2498227 70354916 ~ 70355591 (-)

Expression


Co-expression Network