LOC110532592 (opn4)


Basic Information

Item Value
gene id LOC110532592
gene name opn4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 67872959 ~ 67899973 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036983431.1
ATGGTGCACGAGGCCCCTCGTCACCCCTTCCCCACTGTGGATGTACCTGACCACGCCCATTATACTATAGGGGCCGTCATCCTGGCTATCGGCATCACCGGCATGGTGGGCAACTTCCTGGTTATCTATGCCTTCAGCAGGAGCAGGTCACTGAGGACTCCAGCCAACATGTTCATCATTAACCTGGCCATCACTGACTTCATGATGTGCATCACACAGGCACCCATCTTCTTCACCACCTCCATTCACAGGAGATGGATCTTCGGGGAGAAAGGCTGTGAGCTCTATGCATTCTGCGGGGCTCTATTTGGGATCTGCTCTATGATCACTCTGACGGTGATAGCAGTGGACCGCTACTTTGTGATCACGCGTCCGTTGGCCTCCATTGGGGTGCTCTCCAAGAAACGAGCCCTGCTCGTCCTCATGGCTGCCTGGGCCTACTCACTGGGGTGGAGCCTGCCCCCTTTCTTCGGCTGGAgTGCCTATGTTCCTGAGGGTCTGTTGACCTCCTGTACATGGGACTATGTGACCTTTACCCCGTCCGTGCGTGCCTACACCATGCTGCTCTTCACCTTTGTCTTCTTCATCCCCCTGATCATCATCATGTACTGCTACTTCTTCATCTTCAGAGCCATACGCACAACTAACAAggCTGTAACCAAGATCAACGGCACTGGGAGCACCAGAGACTCCATTAAGAGTTTCCATCGGCTGAAGAATGAGTGGAAGATGGCTAAGATCGCTCTTATTGTCATCCTCCTCTATGTCATCTCTTGGTCCCCCTACTCTGCTGTTGCCCTGACCGCATTTTCAGGGTATACAGATTTTCTGACCCCCTACATGAACTCAGTACCTGCTGTGATCGCCAAGGCTTCAGCCATTCACAACCCCATCATCTATGCCATCACCCACCCCAAGTACAGGATGGCCATAGCCAAGTACATCCCATGCCTGGGGTTTTTGCTGTGTGTACGTAGACGCGACCTGCAATCCACCAACAGCAGTTTCATGTCCACCCGACGATCCACTGTCACCAGCCAGACATCCGACATCGGCGACCGCTTACACCGCACCAGCACTGTCAAGTCCCGCCTCTCTTCCGCCTCCGACAGCGAATCGGCCTGGACAGATACTGAGGCTGACCTCTCCAGTATGGGCTCCTGGCCGGCTAGCCGCCAGGTGTCCTGTGATATCAGTAAGGACACCACCGAGCTCCCACACTTCAAGCCCTCCAGCTCCAAGTCCAAGATGAAGATCCACGACTCTGGTATCTTTGAGAAGAGCTCTAATGCCATGGACAACATCTCCATGACAGGCGTGGGCCACAGTGACCACGGCTTCCCTCCAAGTGCAGGTGATTCGCCAGAAGGCACCATAACTAGAGGAATGATTGGCCGGATTCCCAGCATCGTCATCACCTCTGAGACCAGCCCCTTCTTACCTGTCCTTAAGGCCAGTTCTCATGGTTCCAGTAGTAGGCCAGCCAGTGGCAGTGTAGATGTAGGATCTGTAACCAAGGGGCCACGGGAGTGTCCAGCAGGGGTCAACACTTCCCTCTAACAGTGATGGCTCTACACCACTCATCTGATCACAACCACCCAGTTTTTATGTACAGCACTTGATTATTTATAGTAAATGCCAGGGTCTGTACTCAACATGCAACTTTTCTAAAAGTCAAGTTAACCCCCATGTGAATATGTTCTTTATTAAaacgtttttgttttgttgctttGTTAATGTGCAAGGTGACAAAGTACAGAATTGCAGTTTGGTATCTACTGTAAGCAAATGGGATAGGTTGTGTTGTCTGCTAAACTTTCACCAGGTCATCTGAGTGAGCTACAATCATACAAGAAGCCCAGCCATTTCAAATCCCTTTCAAACATTTCCCCTAGCTCAGGTCCCCTCCTCTTAGAGCTGCAAGAGGAAGATGGCTGAAACAGATGATATAGAACTGTTGTGTGTAGTAATGCATTTGTGACTGAAACAGGCAGCACTGATCTGAGCTGGAGATGGCCATCTGAGtgatctacactatatatacaaaagtatgtggacaccccttcaaattaatggattcggctatttcagccacacccattgctgacaggcgTATAAAATCAAGGACACAGCCATGCAATTCCATAGGCAAACATTAGCACTAGAATGGCcttacaaactgcctctggaagcaacgtcagaacAAGAACTGTtgggagattcatgaaatgggtttccatggcagagcaggagcacaaaagcctaagatcaccatgctcaatgccaagcgtcggctggaggggtgtaaagctgtGGTGTAAAGAGTGGTGTAAAGAAGGCccttcttgtttcagcatgacaatgcccctgtgtacaaagcgaggtccatacagaaatggtttgtcaagatttgTGTGGAAGaacactgacctcaa

Function

symbol description
opn4 Enables 11-cis retinal binding activity and G protein-coupled photoreceptor activity. Involved in phototransduction. Located in plasma membrane.

NR:

description
PREDICTED: melanopsin isoform X1

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04255 OPN4, Rh2_7; r-opsin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036983431.1 True 2435 mRNA 0.50 10 67872959 67899973

Neighbor

gene id symbol gene type direction distance location
LOC110527725 LOC106606152 coding downstream 16270 67814039 ~ 67856689 (-)
LOC118965293 ldb3 coding downstream 59215 67796955 ~ 67813744 (-)
LOC110527713 bmpr1a coding downstream 79609 67726138 ~ 67793350 (-)
LOC110527687 sncg coding downstream 191184 67669589 ~ 67681775 (-)
LOC110527672 NA coding downstream 230838 67638731 ~ 67642121 (-)
LOC110532597 NA coding upstream 49012 67897706 ~ 67953556 (-)
LOC110527734 LOC106576704 coding upstream 61795 67961768 ~ 68077805 (-)
LOC110527765 LOC100194528 coding upstream 178177 68078150 ~ 68086116 (-)
LOC110527775 LOC106576703 coding upstream 204155 68104128 ~ 68117689 (-)
LOC110527795 LOC106576701 coding upstream 242979 68142952 ~ 68152016 (-)
G75426 NA non-coding downstream 121130 67751467 ~ 67751829 (-)
G75413 NA non-coding downstream 147159 67723624 ~ 67725800 (-)
G75385 NA non-coding downstream 228995 67643690 ~ 67643964 (-)
G75384 NA non-coding downstream 229359 67643221 ~ 67643600 (-)
G75383 NA non-coding downstream 230284 67642459 ~ 67642675 (-)
G75539 NA non-coding upstream 85194 67985167 ~ 67992028 (-)
G75612 LOC106576702 non-coding upstream 238822 68138795 ~ 68142480 (-)
G75664 NA non-coding upstream 305871 68205844 ~ 68206060 (-)
G75665 NA non-coding upstream 306843 68206816 ~ 68207132 (-)
G75764 NA non-coding upstream 332259 68232232 ~ 68285627 (-)
LOC110527584 LOC106576720 other downstream 484915 67386509 ~ 67389299 (-)
LOC110527436 ppp2r5d other downstream 862372 66965664 ~ 67010646 (-)
tjap1 tjap1 other downstream 1050143 66806836 ~ 66883731 (-)
LOC110526867 LOC100136521 other downstream 3491603 64369803 ~ 64384521 (-)
sdhaf4 LOC106576700 other upstream 257988 68157900 ~ 68162024 (-)
G75682 NA other upstream 310207 68210180 ~ 68211706 (-)
LOC110527951 coda1 other upstream 675620 68575379 ~ 68690343 (-)
LOC118965321 LOC106576963 other upstream 2182867 70082835 ~ 70088715 (-)
G78414 NA other upstream 2454943 70354916 ~ 70355591 (-)

Expression


Co-expression Network