LOC118965297


Basic Information

Item Value
gene id LOC118965297
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 68116128 ~ 68117384 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052605.1
CCCACTTCAGCAGCGAAATgccagccagcacctctcctcccccatgcACTCTCCCACTATTTGTGCCCTATGGGTTGACCCCATAGTTGTGCTAATGCAACCTATGAGATTTTAAGAGAGTGTCCATGTTGAAGCTACATGATCTGTAAGGATCTCTTACTCTGGTAGAAActttacacatcaatagttacattGAGGTGTGTGAGGATAGAGGAATTTATATTTGTTTTGAAGGGGTTCTTTAACCCTTTGGATCTCAACTAGCACTGGGGAAGAAAATAACCCAGACAACTTCTTCACTGGGCTGAAACACACACTTTGCTTTGCTGAACTGGATATCCTCTTATGAAGAGGTGTAGCGACTGACTGAGAACCCTGACTGAGAACCCTGACTGAGAACCCTGACTGAGAACCAGCCATTCAGAAACGAGAGAGATCCAATGAGGAAAGATGATTGTCCGATCTGTCCGACATCTGTGCAATCACATAGCAAATGCTTTAAGAAAACAGTACTTCATGTTTTTACCATCCTACCTTTCACTGAAGCCATACCTTGGCCACCTGAAGTGGTTTCTGGTGCTCCGCGCCCCCCTGGAGACGAAAGCCCCATGGTGCTCCACCAGACAAG

Function

NR:

description
PREDICTED: synaptopodin 2-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052605.1 True 628 mRNA 0.46 3 68116128 68117384

Neighbor

gene id symbol gene type direction distance location
mmrn2a mmrn2 coding upstream 391768 67705791 ~ 67724360 (+)
glud1 gdh01 coding upstream 477708 67596677 ~ 67638420 (+)
psda LOC106576711 coding upstream 541079 67528611 ~ 67575049 (+)
aifm2 amid coding upstream 609447 67499187 ~ 67506681 (+)
gins1 gins1 coding upstream 669635 67443706 ~ 67446493 (+)
LOC110527784 LOC106576702 coding downstream 10481 68127865 ~ 68140839 (+)
slc2a15a LOC106576697 coding downstream 157995 68275379 ~ 68295406 (+)
fgf8a LOC106576696 coding downstream 198948 68316332 ~ 68322937 (+)
fbxw4 fbxw4 coding downstream 221653 68339037 ~ 68396401 (+)
borcs7 borcs7 coding downstream 288113 68405497 ~ 68408288 (+)
G75167 NA non-coding upstream 13472 68099714 ~ 68102656 (+)
G75165 NA non-coding upstream 19454 68095675 ~ 68096674 (+)
G75117 NA non-coding upstream 36640 68078074 ~ 68079488 (+)
G75151 NA non-coding upstream 40061 68072671 ~ 68076067 (+)
G75107 NA non-coding upstream 73676 68026636 ~ 68042452 (+)
G75702 NA non-coding downstream 114829 68232213 ~ 68285626 (+)
G75745 NA non-coding downstream 260333 68377717 ~ 68378334 (+)
G75888 NA non-coding downstream 328014 68445398 ~ 68445652 (+)
G75893 NA non-coding downstream 341939 68459323 ~ 68460387 (+)
G75948 NA non-coding downstream 379217 68496601 ~ 68497921 (+)
G74139 NA other upstream 1331159 66784335 ~ 66784969 (+)
G74067 LOC106576735 other upstream 1357144 66756207 ~ 66758984 (+)
LOC118965274 LOC106576739 other upstream 1692047 66417495 ~ 66424081 (+)
G73515 NA other upstream 1827659 66287679 ~ 66288469 (+)
LOC110527164 LOC106576754 other upstream 2193843 65915581 ~ 65922285 (+)
G75747 NA other downstream 257121 68374505 ~ 68374929 (+)
G78121 NA other downstream 2454281 70571665 ~ 70654961 (+)
ccdc85a ccdc85a other downstream 2919086 71036440 ~ 71076239 (+)
G82111 LOC106577091 other downstream 5434232 73551616 ~ 73571737 (+)
G83836 NA other downstream 6791841 74909225 ~ 74909806 (+)

Expression


Co-expression Network