LOC110527784 (LOC106576702)


Basic Information

Item Value
gene id LOC110527784
gene name LOC106576702
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 68127865 ~ 68140839 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021609303.2
TTTGCCACGTTTCACTAATGACGTAACCTCTCCTTAGCTTTGACAACAAGCAGAAGGGGCAAACGAGCGGTTGAAACATCGACCAGCCTAGTTGCCTACATTGTCAGTAGGGCACTGTAGTCATATTCTTCACGGCAGAACATACTCAATATTTGACGACCCTTTAGGAACAAACTACGATTTCCGAAAATCGCTCAACTCTCTAGCGGAAGGGGGTGTCGTTTTATAAGAAGAGGGGATTTACTGTGACGAGTCCACGATGAATCCCGAATATGACTATTTATTCAAGCTGCTCCTGATCGGTGACTCTGGTGTCGGAAAGTCATGTCTTCTACTCCGATTTGCAgatGACACATACACAGAAAGCTACATAAGCACAATTGGAGTAGACTTCAAAATACGAACTATAGAATTAGACGGAAAGACCATTAAACTTCAAATCTGGGACACGGCGGGGCAGGAGAGGTTTCGCACAATCACATCCAGCTACTATAGAGGAGCCCACGGCATTATCGTAGTCTACGACGTCACAgaccagGAGTCCTTCAACAATGTCAAGCAGTGGCTACAGGAAATCGACCGCTATGCCAGTGAAAATGTCAACAAGCTATTGGTGGGGAACAAGTGTGACCTGACCACAAAGAAAGTGGTGGATTACACAACAGCAAAGGAGTTTGCAGACTCCCTGGGCATCCCCTTCTTGGAAACGAGTGCCAAGAGCGCCACCAATGTGGAGCAGGCCTTCATGACCATGGCTGCTGAGATCAAGAAGAGGATGGGGCCCGGGGCCACGACCGGAGGCAACGAGAAGTCCAATGTCAAGATCCAGAGTACGCCTGTCAAACCTGCCTCGGGGGGCTGCTGCTGAGAGAGAACCCCACCaacacctctacccccacctcaaGCACCCCCCTCTAGCCTGTCAGCCCCCTCCACCTGGCCCCATTTTCCACCATGCCCCACCTTCCTAGCCTAACCGTAACCGAGAGAGGGAAAGTCTGATAGAaagaagttgtgtgtgtgtgcgagagggAAAACAAAATGAAGTTGCCTGAATTTGTACTGTAGCTGCACTACCAAGAAAATAAATCATTATCCCCCCTCCCTTATTGCCCTGGTAATTGATGATTAGTAGTACTTTCTAGGCAATCTGTTAGCAGTCAGATGGACATGTCCCTCACTGGCCCCCTCTTGGAGAGGCTTTACCCCCCCACCCTTCCCCGGACCACCTCAGAGACAACTGATTTTGTTTGCCCCCTCACCCCCGCAGATAAAACGCCCCCCTCTGTGTGCAGGGTTATGagaataatgtgtgtgtatctcacTGCATTTCTACGTCGGGATTGGTCTGTGGTCAAATTTAATTATGTTTTCTATTCTTCTGTCCCCgtcttttttctttttcttcgATTTCCTTTCCTGTTGGTTATTTTACTGTTTGTGTCGGCATGTCTCTCTAAGGTGTTTATTCGCGAATATGAGTGTCAGCCAACTGCacaagtctctcactgtctcGTGAAAAAGAACTGAAAAATATACCAGTACCAGTCAagcgtttggacacctactcaatcaagggttttcatttggactattttctacattgtagaataatagtggacatcaaaactatgaaataacacatggaatcatgtagtaaccaaaaaa
>XM_021609293.2
TTTCACTAATGACGTAACCTCTCCTTAGCTTTGACAACAAGCAGAAGGGGCAAACGAGCGGTTGAAACATCGACCAGCCTAGTTGCCTACATTGTCAGTAGGGCACTGTAGTCATATTCTTCACGGCAGAACATACTCAATATTTGACGACCCTTTAGGAACAAACTACGATTTCCGAAAATCGCTCAACTCTCTGTAAGGCTTCTCTGTTTGTGGAGTTGCTATTTCCTGAGCGGAAGGGGGTGTCGTTTTATAAGAAGAGGGGATTTACTGTGACGAGTCCACGATGAATCCCGAATATGACTATTTATTCAAGCTGCTCCTGATCGGTGACTCTGGTGTCGGAAAGTCATGTCTTCTACTCCGATTTGCAgatGACACATACACAGAAAGCTACATAAGCACAATTGGAGTAGACTTCAAAATACGAACTATAGAATTAGACGGAAAGACCATTAAACTTCAAATCTGGGACACGGCGGGGCAGGAGAGGTTTCGCACAATCACATCCAGCTACTATAGAGGAGCCCACGGCATTATCGTAGTCTACGACGTCACAgaccagGAGTCCTTCAACAATGTCAAGCAGTGGCTACAGGAAATCGACCGCTATGCCAGTGAAAATGTCAACAAGCTATTGGTGGGGAACAAGTGTGACCTGACCACAAAGAAAGTGGTGGATTACACAACAGCAAAGGAGTTTGCAGACTCCCTGGGCATCCCCTTCTTGGAAACGAGTGCCAAGAGCGCCACCAATGTGGAGCAGGCCTTCATGACCATGGCTGCTGAGATCAAGAAGAGGATGGGGCCCGGGGCCACGACCGGAGGCAACGAGAAGTCCAATGTCAAGATCCAGAGTACGCCTGTCAAACCTGCCTCGGGGGGCTGCTGCTGAGAGAGAACCCCACCaacacctctacccccacctcaaGCACCCCCCTCTAGCCTGTCAGCCCCCTCCACCTGGCCCCATTTTCCACCATGCCCCACCTTCCTAGCCTAACCGTAACCGAGAGAGGGAAAGTCTGATAGAaagaagttgtgtgtgtgtgcgagagggAAAACAAAATGAAGTTGCCTGAATTTGTACTGTAGCTGCACTACCAAGAAAATAAATCATTATCCCCCCTCCCTTATTGCCCTGGTAATTGATGATTAGTAGTACTTTCTAGGCAATCTGTTAGCAGTCAGATGGACATGTCCCTCACTGGCCCCCTCTTGGAGAGGCTTTACCCCCCCACCCTTCCCCGGACCACCTCAGAGACAACTGATTTTGTTTGCCCCCTCACCCCCGCAGATAAAACGCCCCCCTCTGTGTGCAGGGTTATGagaataatgtgtgtgtatctcacTGCATTTCTACGTCGGGATTGGTCTGTGGTCAAATTTAATTATGTTTTCTATTCTTCTGTCCCCgtcttttttctttttcttcgATTTCCTTTCCTGTTGGTTATTTTACTGTTTGTGTCGGCATGTCTCTCTAAGGTGTTTATTCGCGAATATGAGTGTCAGCCAACTGCacaagtctctcactgtctcGTGAAAAAGAACTGAAAAATATACCAGTACCAGTCAagcgtttggacacctactcaatcaagggttttcatttggactattttctacattgtagaataatagtggacatcaaaactatgaaataacacatggaatcatgtagtaaccaaaaaa

Function

NR:

description
PREDICTED: ras-related protein ORAB-1-like

GO: NA

KEGG:

id description
K07874 RAB1A; Ras-related protein Rab-1A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021609303.2 False 1668 mRNA 0.47 7 68127865 68140839
XM_021609293.2 True 1695 mRNA 0.47 7 68127874 68140839
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118965297 NA coding upstream 10481 68116128 ~ 68117384 (+)
mmrn2a mmrn2 coding upstream 403505 67705791 ~ 67724360 (+)
glud1 gdh01 coding upstream 489445 67596677 ~ 67638420 (+)
psda LOC106576711 coding upstream 552816 67528611 ~ 67575049 (+)
aifm2 amid coding upstream 621184 67499187 ~ 67506681 (+)
slc2a15a LOC106576697 coding downstream 134540 68275379 ~ 68295406 (+)
fgf8a LOC106576696 coding downstream 175493 68316332 ~ 68322937 (+)
fbxw4 fbxw4 coding downstream 198198 68339037 ~ 68396401 (+)
borcs7 borcs7 coding downstream 264658 68405497 ~ 68408288 (+)
inaa ina coding downstream 293727 68434566 ~ 68437539 (+)
G75167 NA non-coding upstream 25209 68099714 ~ 68102656 (+)
G75165 NA non-coding upstream 31191 68095675 ~ 68096674 (+)
G75117 NA non-coding upstream 48377 68078074 ~ 68079488 (+)
G75151 NA non-coding upstream 51798 68072671 ~ 68076067 (+)
G75107 NA non-coding upstream 85413 68026636 ~ 68042452 (+)
G75702 NA non-coding downstream 91374 68232213 ~ 68285626 (+)
G75745 NA non-coding downstream 236878 68377717 ~ 68378334 (+)
G75888 NA non-coding downstream 304559 68445398 ~ 68445652 (+)
G75893 NA non-coding downstream 318484 68459323 ~ 68460387 (+)
G75948 NA non-coding downstream 355762 68496601 ~ 68497921 (+)
G74139 NA other upstream 1342896 66784335 ~ 66784969 (+)
G74067 LOC106576735 other upstream 1368881 66756207 ~ 66758984 (+)
LOC118965274 LOC106576739 other upstream 1703784 66417495 ~ 66424081 (+)
G73515 NA other upstream 1839396 66287679 ~ 66288469 (+)
LOC110527164 LOC106576754 other upstream 2205580 65915581 ~ 65922285 (+)
G75747 NA other downstream 233666 68374505 ~ 68374929 (+)
G78121 NA other downstream 2430826 70571665 ~ 70654961 (+)
ccdc85a ccdc85a other downstream 2895631 71036440 ~ 71076239 (+)
G82111 LOC106577091 other downstream 5410777 73551616 ~ 73571737 (+)
G83836 NA other downstream 6768386 74909225 ~ 74909806 (+)

Expression

LOC110527784(LOC106576702) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 40.
End of interactive chart.

LOC110527784(LOC106576702) Expression in each Bioproject

Bar chart with 21 bars.
LOC110527784(LOC106576702) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
End of interactive chart.

Co-expression Network